Clc09G07350 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G07350
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
LocationClcChr09: 5910950 .. 5913384 (-)
RNA-Seq ExpressionClc09G07350
SyntenyClc09G07350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTTCAGCCACGGTGCTGATTGTGTTTTGGTTTCTTTCTAAATCCTCAAAGAAGTAGATGATGCTTCTAAGTGGTGGATAGAACAGAAGAAGTTAGAGTTAGTTGTAGTCAAGATTCGCTATTAAGAGATTTCCAGGATGAACGCGGAGGACATTATCGAGAACTGGAAGAACCTTCGTTTATCAGATGAAGAAAAAGGAACTAAGAGTGAATTCGATCATCAGCTGGGATCCATGATTGAAGACCAATTGGATTTATGTCTAGTCGGCAAATTGCTGACCCCTCGTATAATAGCTCCAGGAATAATCAAGAATGTTTTTGCAAATGCCTGGAGAACAAAGGATGGGTTTCAGTGTTGAAGGTCTGGGTAGGAACATCTTTCTTTTTAAATTCGACTCAAGGAAGGACAAAGAGTTTGTAGTTCGTTTGGGACCTTGGCTCATGGATAATGCTTTATTGGCGCTAGAGGCTCCTAAAGCAAACATAAAAGTCTCACAGATGAAATTTGGAAAAGCTGCCTTCTGGGTCCGTTTCTTGGATATCCCTCTTGGTTTTCAAAACAAGTTTATGGCAAAACGGCTAGGAAATGCGATGGGAGAATTCTTGGAAGCTGAATGTAACCAGGATAATTTCTGTTGGGGAGAAAGTTTAAGGGTCAAGATTATGATCGATATAACCAAGCCCCTTCCCAGAGGAATCTGGATTGAACCAGGGGAAAATGTAGATAGTTTATGGATTCAAGCCAAGTATGAGAGATTACCAGATTTCTGCTATGGATGTGGAAGAACCGGTCATGTCGTGAAGGACTGTCCCCATCTATCTGAAGGAGAAAAACAAGAAACTGAACCCTTTCAGTTTGGCAATTGGCTGCGATTTCAGGGAAGCAATTTGAAACGCAAAAAGAAAAATAGGTCGCCCAGTTTTGAGAAAGAAGAGTCCCCTGAAATTCCATGTCACCCAAATCCTCCCGTTTCTAACACAGTCGACTCCCCCTCTACTCACTCCAAAGAAGGTTTTAACATGCTGCACAATACTTGGCAATCCACTGATCAAGAAGAAGATCCTGCTGTTAATAATCATACGATTGACTTAAATCTTGGCCCCCAGGTTTGGGGAAGAAAGGAAGCTCCTTCGAAAAATTTATCTAATGGTAGTCCAAACGCAGACAAACATGTGTTCTCTGATCCAAAGGCTTCAATGGAGGAAGAAGGCACTATAGAGGATTTCACTCAACCGGTAGCAATGGAGACAAATCAGAAAAAAAGAAGAGGTTGGAAAAGAAGAGCAAGATCAGAAATCCTATATTCTCCTCAGAACAGTGAAGATCAGGTGTTATTAAAAAGAAAAGGAGTTTCTTTGGTAGAACTTGAAGAGGCAAAGAGAAAAAGAGAGTCGTCCCTACCAAATTACCCTATAGTTTCCCACTCAAAATCGGCGGAGTTTGCTCAGCAGCTCTGCCGGGAACCATGAAAATCCTCTGTTGGAATGCTCGGGGCGTGGGCAATCCTCGAGCATTCCGTGCTGTGTCTAACCTCATTCGGGTAAGACGTCCGCATGTTCTGTTCATATCTGAAACAAAATGTGGTGAAAACTGTACAAACAAGATAAAGAGAGTTGGGAATTTTTTTGGATGTCTATCGGTTAATAGTGTTGGCAGGAAAGGGGGGTTGTGTTTGTTGTGGACTGATCAGGTGAACTTGGAAGTATTATCGTACTCCCAAAACCATATCGATACAAAAATTGAGTGGGAAAACAAAGTTTTTAGATTCACAGGAATCTATGGCCACCCTGAGAGTAACAAGAAAATTCAAACATGGAATCTACAAAAGAATCTATGTGATGGAAGCGACTCCCCTTGGCTGGTACGGGGTGATCTAAATGAAATTCTCAGAATAGAGGAAAAGCATGGAGGATCTCAAAAAGATAACTATTTTCTTGAAAACTTCAGGGAGGCCCTAGATGATTGTAATTTAAAAGATACAGTTTTCGAAGGTCCTGATTTTACATGGTGCAATAGAAGGAGAGTCAATTGCACTTGGGAAAGGCTAGACCGTTTCCTTTGCAATCTGAATTTTGAATCACTATTTGAAAATTTCACAATTAAGCAGGATTGGCTCTCTTCGGATCATAGGCCTATCGAGTTCTCTTTAAGAAACTCATCTGCTGGAAAAAAGGGAAGGAAAAATCATTGAAAATTTGAAGAATCTTGGACCATCCACGATGAATGCAAAAAAATTATCAAGGAAGAAGGAATTTGGTATCCATCAGCCCAGTTCAAGATTCTATGCCTTAACCAAAATCTCAACCGGTGTGCTGTTGCCCTTAAACAATGGGGCAGGCCCATAACTAAAGGCTTAAAAAGCAGAATCATCAAATGCAAAAGAGCCTTACAAGATGCTTACAATTGCTTCCCTAATGTTGACTTTGACAAAAT

mRNA sequence

TACTTCAGCCACGGTGCTGATTGTGTTTTGGTTTCTTTCTAAATCCTCAAAGAAGTAGATGATGCTTCTAAGTGGTGGATAGAACAGAAGAAGTTAGAGTTAGTTGTAGTCAAGATTCGCTATTAAGAGATTTCCAGGATGAACGCGGAGGACATTATCGAGAACTGGAAGAACCTTCGTTTATCAGATGAAGAAAAAGGAACTAAGAGTGAATTCGATCATCAGCTGGGATCCATGATTGAAGACCAATTGGATTTATGTCTAGTCGGCAAATTGCTGACCCCTCGTATAATAGCTCCAGGAATAATCAAGAATGTTTTTGCAAATGCCTGGAGAACAAAGGATGGGTTTCAGTGTTGAAGGTCTGGGTAGGAACATCTTTCTTTTTAAATTCGACTCAAGGAAGGACAAAGAGTTTGTAGTTCGTTTGGGACCTTGGCTCATGGATAATGCTTTATTGGCGCTAGAGGCTCCTAAAGCAAACATAAAAGTCTCACAGATGAAATTTGGAAAAGCTGCCTTCTGGGTCCGTTTCTTGGATATCCCTCTTGGTTTTCAAAACAAGTTTATGGCAAAACGGCTAGGAAATGCGATGGGAGAATTCTTGGAAGCTGAATGTAACCAGGATAATTTCTGTTGGGGAGAAAGTTTAAGGGTCAAGATTATGATCGATATAACCAAGCCCCTTCCCAGAGGAATCTGGATTGAACCAGGGGAAAATGTAGATAGTTTATGGATTCAAGCCAAGTATGAGAGATTACCAGATTTCTGCTATGGATGTGGAAGAACCGGTCATGTCGTGAAGGACTGTCCCCATCTATCTGAAGGAGAAAAACAAGAAACTGAACCCTTTCAGTTTGGCAATTGGCTGCGATTTCAGGGAAGCAATTTGAAACGCAAAAAGAAAAATAGGTCGCCCAGTTTTGAGAAAGAAGAGTCCCCTGAAATTCCATGTCACCCAAATCCTCCCGTTTCTAACACAGTCGACTCCCCCTCTACTCACTCCAAAGAAGGTTTTAACATGCTGCACAATACTTGGCAATCCACTGATCAAGAAGAAGATCCTGCTGTTAATAATCATACGATTGACTTAAATCTTGGCCCCCAGGTTTGGGGAAGAAAGGAAGCTCCTTCGAAAAATTTATCTAATGGTAGTCCAAACGCAGACAAACATGTGTTCTCTGATCCAAAGGCTTCAATGGAGGAAGAAGGCACTATAGAGGATTTCACTCAACCGGTAGCAATGGAGACAAATCAGAAAAAAAGAAGAGGTTGGAAAAGAAGAGCAAGATCAGAAATCCTATATTCTCCTCAGAACAGTGAAGATCAGGTGTTATTAAAAAGAAAAGGAGTTTCTTTGGTAGAACTTGAAGAGGCAAAGAGAAAAAGAGAGTCGTCCCTACCAAATTACCCTATAGTTTCCCACTCAAAATCGGCGGAGTTTGCTCAGCAGCTCTGCCGGGAACCATGAAAATCCTCTGTTGGAATGCTCGGGGCGTGGGCAATCCTCGAGCATTCCGTGCTGTGTCTAACCTCATTCGGGTAAGACGTCCGCATGTTCTGTTCATATCTGAAACAAAATGTGGTGAAAACTGTACAAACAAGATAAAGAGAGTTGGGAATTTTTTTGGATGTCTATCGGTTAATAGTGTTGGCAGGAAAGGGGGGTTGTGTTTGTTGTGGACTGATCAGGTGAACTTGGAAGTATTATCGTACTCCCAAAACCATATCGATACAAAAATTGAGTGGGAAAACAAAGTTTTTAGATTCACAGGAATCTATGGCCACCCTGAGAGTAACAAGAAAATTCAAACATGGAATCTACAAAAGAATCTATGTGATGGAAGCGACTCCCCTTGGCTGGTACGGGGTGATCTAAATGAAATTCTCAGAATAGAGGAAAAGCATGGAGGATCTCAAAAAGATAACTATTTTCTTGAAAACTTCAGGGAGGCCCTAGATGATTGTAATTTAAAAGATACAGTTTTCGAAGGTCCTGATTTTACATGGTGCAATAGAAGGAGAGTCAATTGCACTTGGGAAAGGCTAGACCGTTTCCTTTGCAATCTGAATTTTGAATCACTATTTGAAAATTTCACAATTAAGCAGGATTGGCTCTCTTCGGATCATAGGCCTATCGAGTTCTCTTTAAGAAACTCATCTGCTGGAAAAAAGGGAAGGAAAAATCATTGAAAATTTGAAGAATCTTGGACCATCCACGATGAATGCAAAAAAATTATCAAGGAAGAAGGAATTTGGTATCCATCAGCCCAGTTCAAGATTCTATGCCTTAACCAAAATCTCAACCGGTGTGCTGTTGCCCTTAAACAATGGGGCAGGCCCATAACTAAAGGCTTAAAAAGCAGAATCATCAAATGCAAAAGAGCCTTACAAGATGCTTACAATTGCTTCCCTAATGTTGACTTTGACAAAAT

Coding sequence (CDS)

ATGTTTTTGCAAATGCCTGGAGAACAAAGGATGGGTTTCAGTGTTGAAGGTCTGGGTAGGAACATCTTTCTTTTTAAATTCGACTCAAGGAAGGACAAAGAGTTTGTAGTTCGTTTGGGACCTTGGCTCATGGATAATGCTTTATTGGCGCTAGAGGCTCCTAAAGCAAACATAAAAGTCTCACAGATGAAATTTGGAAAAGCTGCCTTCTGGGTCCGTTTCTTGGATATCCCTCTTGGTTTTCAAAACAAGTTTATGGCAAAACGGCTAGGAAATGCGATGGGAGAATTCTTGGAAGCTGAATGTAACCAGGATAATTTCTGTTGGGGAGAAAGTTTAAGGGTCAAGATTATGATCGATATAACCAAGCCCCTTCCCAGAGGAATCTGGATTGAACCAGGGGAAAATGTAGATAGTTTATGGATTCAAGCCAAGTATGAGAGATTACCAGATTTCTGCTATGGATGTGGAAGAACCGGTCATGTCGTGAAGGACTGTCCCCATCTATCTGAAGGAGAAAAACAAGAAACTGAACCCTTTCAGTTTGGCAATTGGCTGCGATTTCAGGGAAGCAATTTGAAACGCAAAAAGAAAAATAGGTCGCCCAGTTTTGAGAAAGAAGAGTCCCCTGAAATTCCATGTCACCCAAATCCTCCCGTTTCTAACACAGTCGACTCCCCCTCTACTCACTCCAAAGAAGGTTTTAACATGCTGCACAATACTTGGCAATCCACTGATCAAGAAGAAGATCCTGCTGTTAATAATCATACGATTGACTTAAATCTTGGCCCCCAGGTTTGGGGAAGAAAGGAAGCTCCTTCGAAAAATTTATCTAATGGTAGTCCAAACGCAGACAAACATGTGTTCTCTGATCCAAAGGCTTCAATGGAGGAAGAAGGCACTATAGAGGATTTCACTCAACCGGTAGCAATGGAGACAAATCAGAAAAAAAGAAGAGGTTGGAAAAGAAGAGCAAGATCAGAAATCCTATATTCTCCTCAGAACAGTGAAGATCAGGTGTTATTAAAAAGAAAAGGAGTTTCTTTGGTAGAACTTGAAGAGGCAAAGAGAAAAAGAGAGTCGTCCCTACCAAATTACCCTATAGTTTCCCACTCAAAATCGGCGGAGTTTGCTCAGCAGCTCTGCCGGGAACCATGA

Protein sequence

MFLQMPGEQRMGFSVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRFLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPGENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPFQFGNWLRFQGSNLKRKKKNRSPSFEKEESPEIPCHPNPPVSNTVDSPSTHSKEGFNMLHNTWQSTDQEEDPAVNNHTIDLNLGPQVWGRKEAPSKNLSNGSPNADKHVFSDPKASMEEEGTIEDFTQPVAMETNQKKRRGWKRRARSEILYSPQNSEDQVLLKRKGVSLVELEEAKRKRESSLPNYPIVSHSKSAEFAQQLCREP
Homology
BLAST of Clc09G07350 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 187.2 bits (474), Expect = 2.7e-43
Identity = 83/197 (42.13%), Postives = 120/197 (60.91%), Query Frame = 0

Query: 14  SVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVR 73
           +VE +G+N+FLF F    D   V++ GPW  D AL+ L+ P ++  +S+++F + AFW+ 
Sbjct: 72  TVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIH 131

Query: 74  FLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEP 133
             D+P+ + NK MA RLGNA+G F++ +CN+  F WG SLR++++IDITKPL RGI I  
Sbjct: 132 LFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

Query: 134 GENVDSLWIQAKYERLPDFCYGCGRTGHVVKDC-PHLSEGEKQETEPFQFGNWLRFQGSN 193
              +   WI  +YERLPDFCY CG  GH   DC       +       ++G WLRF GS 
Sbjct: 192 DGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSK 251

Query: 194 LKRKKKNRSPSFEKEES 210
              +K  +  S  +E+S
Sbjct: 252 AGAQKGRKGKSPAREDS 268

BLAST of Clc09G07350 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-40
Identity = 80/178 (44.94%), Postives = 106/178 (59.55%), Query Frame = 0

Query: 13  FSVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWV 72
           FSV+ +G NIFLF F+   D+  ++R+GPW  D AL+ ++ P +  K   M F   + WV
Sbjct: 72  FSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWV 131

Query: 73  RFLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIE 132
            F D+ L   NK MA RLGNA+G F + E N +NFCWG  LRV++  D+ KPL RGI + 
Sbjct: 132 HFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLN 191

Query: 133 PGENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPFQFGNWLRFQG 191
               +   WI  +YERLPDF Y CGR  H++KDC         +    Q+G WLRFQG
Sbjct: 192 LDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKN--LQYGPWLRFQG 247

BLAST of Clc09G07350 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-36
Identity = 79/179 (44.13%), Postives = 106/179 (59.22%), Query Frame = 0

Query: 13  FSVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWV 72
           F V+ LG N+FLF F    D+  + + GPW  D  L+ +  P A I  S++ F K   WV
Sbjct: 72  FEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDFTKLPIWV 131

Query: 73  RFLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIE 132
           RF D+PLG   + MA RLGNA+G F EA+C+  N  WG +LRV++M+DI+KPL RGI + 
Sbjct: 132 RFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLN 191

Query: 133 PGENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPFQFGNWLRFQGS 192
               +   WI  +YERLPDFCY CG           LS   K+     Q+G+WLR+QG+
Sbjct: 192 LDGPIGGAWIPIQYERLPDFCYHCG-----------LSSSRKKH----QYGSWLRYQGT 235

BLAST of Clc09G07350 vs. NCBI nr
Match: TXG60547.1 (hypothetical protein EZV62_015120 [Acer yangbiense])

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-34
Identity = 73/190 (38.42%), Postives = 119/190 (62.63%), Query Frame = 0

Query: 15  VEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRF 74
           +E +G N+F+F FD+ +D+ +V + GPW  D +LL LE P+   ++S+M F +A FWV+ 
Sbjct: 45  IEAVGENVFMFFFDNPEDRIWVWQRGPWHFDKSLLVLEIPEGTGEISKMSFNRADFWVQI 104

Query: 75  LDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPG 134
            +IP+   N+ MAK L   +GE +E   ++   CWG+  RVK+ IDI++PL R + +   
Sbjct: 105 HNIPIMCMNRRMAKWLAEQIGEVIEIP-SESRDCWGKFFRVKVRIDISRPLKRWLRLSLD 164

Query: 135 ENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHL-SEGEKQETEPFQFGNWLRFQGSNL 194
           ++ + + +  KYERLP+FC+ CG+ GH + DCP   ++ E  E    +FG+W+R   + +
Sbjct: 165 QSGNIVVVGLKYERLPEFCFACGKIGHGINDCPDKEAKKEAMEGTNLRFGSWMR---API 224

Query: 195 KRKKKNRSPS 204
             K K+RS S
Sbjct: 225 SEKTKDRSSS 230

BLAST of Clc09G07350 vs. NCBI nr
Match: TXG48504.1 (hypothetical protein EZV62_024379 [Acer yangbiense])

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-33
Identity = 75/199 (37.69%), Postives = 117/199 (58.79%), Query Frame = 0

Query: 15  VEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRF 74
           +E +G+N FLF F + +D+  + R GPW  D  LLALE  +    +SQ+ F KA FWV+ 
Sbjct: 72  IEAVGKNTFLFYFANPEDRNRIWRRGPWHFDRHLLALEKLEGTGNISQLSFSKAEFWVQI 131

Query: 75  LDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPG 134
            DIP+   N+ MAK L   +G+ +E   ++   CWG+ LRVK++IDI++PL R + ++  
Sbjct: 132 HDIPIMCMNRCMAKWLAAQIGDIIEIP-SKSRECWGKFLRVKVLIDISRPLKRWLRLKLD 191

Query: 135 ENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPF-QFGNWLRFQGSN- 194
           ++ + + +  KYERLP+FCY CGR GH + DC  +   +     P  +FG+W+R    + 
Sbjct: 192 QSDNIVMVNLKYERLPEFCYACGRLGHSIGDCNDVEAKKAAVEGPITKFGSWMRASLQDK 251

Query: 195 --LKRKKKNRSPSFEKEES 210
             +K    +   S +KE S
Sbjct: 252 IQVKASSMSSGGSSDKERS 269

BLAST of Clc09G07350 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-43
Identity = 83/197 (42.13%), Postives = 120/197 (60.91%), Query Frame = 0

Query: 14  SVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVR 73
           +VE +G+N+FLF F    D   V++ GPW  D AL+ L+ P ++  +S+++F + AFW+ 
Sbjct: 72  TVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIH 131

Query: 74  FLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEP 133
             D+P+ + NK MA RLGNA+G F++ +CN+  F WG SLR++++IDITKPL RGI I  
Sbjct: 132 LFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

Query: 134 GENVDSLWIQAKYERLPDFCYGCGRTGHVVKDC-PHLSEGEKQETEPFQFGNWLRFQGSN 193
              +   WI  +YERLPDFCY CG  GH   DC       +       ++G WLRF GS 
Sbjct: 192 DGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSK 251

Query: 194 LKRKKKNRSPSFEKEES 210
              +K  +  S  +E+S
Sbjct: 252 AGAQKGRKGKSPAREDS 268

BLAST of Clc09G07350 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 80/178 (44.94%), Postives = 106/178 (59.55%), Query Frame = 0

Query: 13  FSVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWV 72
           FSV+ +G NIFLF F+   D+  ++R+GPW  D AL+ ++ P +  K   M F   + WV
Sbjct: 72  FSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWV 131

Query: 73  RFLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIE 132
            F D+ L   NK MA RLGNA+G F + E N +NFCWG  LRV++  D+ KPL RGI + 
Sbjct: 132 HFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLN 191

Query: 133 PGENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPFQFGNWLRFQG 191
               +   WI  +YERLPDF Y CGR  H++KDC         +    Q+G WLRFQG
Sbjct: 192 LDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKN--LQYGPWLRFQG 247

BLAST of Clc09G07350 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.9e-37
Identity = 79/179 (44.13%), Postives = 106/179 (59.22%), Query Frame = 0

Query: 13  FSVEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWV 72
           F V+ LG N+FLF F    D+  + + GPW  D  L+ +  P A I  S++ F K   WV
Sbjct: 72  FEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDFTKLPIWV 131

Query: 73  RFLDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIE 132
           RF D+PLG   + MA RLGNA+G F EA+C+  N  WG +LRV++M+DI+KPL RGI + 
Sbjct: 132 RFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLN 191

Query: 133 PGENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPFQFGNWLRFQGS 192
               +   WI  +YERLPDFCY CG           LS   K+     Q+G+WLR+QG+
Sbjct: 192 LDGPIGGAWIPIQYERLPDFCYHCG-----------LSSSRKKH----QYGSWLRYQGT 235

BLAST of Clc09G07350 vs. ExPASy TrEMBL
Match: A0A5C7HTV0 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015120 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.4e-35
Identity = 73/190 (38.42%), Postives = 119/190 (62.63%), Query Frame = 0

Query: 15  VEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRF 74
           +E +G N+F+F FD+ +D+ +V + GPW  D +LL LE P+   ++S+M F +A FWV+ 
Sbjct: 45  IEAVGENVFMFFFDNPEDRIWVWQRGPWHFDKSLLVLEIPEGTGEISKMSFNRADFWVQI 104

Query: 75  LDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPG 134
            +IP+   N+ MAK L   +GE +E   ++   CWG+  RVK+ IDI++PL R + +   
Sbjct: 105 HNIPIMCMNRRMAKWLAEQIGEVIEIP-SESRDCWGKFFRVKVRIDISRPLKRWLRLSLD 164

Query: 135 ENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHL-SEGEKQETEPFQFGNWLRFQGSNL 194
           ++ + + +  KYERLP+FC+ CG+ GH + DCP   ++ E  E    +FG+W+R   + +
Sbjct: 165 QSGNIVVVGLKYERLPEFCFACGKIGHGINDCPDKEAKKEAMEGTNLRFGSWMR---API 224

Query: 195 KRKKKNRSPS 204
             K K+RS S
Sbjct: 225 SEKTKDRSSS 230

BLAST of Clc09G07350 vs. ExPASy TrEMBL
Match: A0A5C7GUN2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024379 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-33
Identity = 75/199 (37.69%), Postives = 117/199 (58.79%), Query Frame = 0

Query: 15  VEGLGRNIFLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRF 74
           +E +G+N FLF F + +D+  + R GPW  D  LLALE  +    +SQ+ F KA FWV+ 
Sbjct: 72  IEAVGKNTFLFYFANPEDRNRIWRRGPWHFDRHLLALEKLEGTGNISQLSFSKAEFWVQI 131

Query: 75  LDIPLGFQNKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPG 134
            DIP+   N+ MAK L   +G+ +E   ++   CWG+ LRVK++IDI++PL R + ++  
Sbjct: 132 HDIPIMCMNRCMAKWLAAQIGDIIEIP-SKSRECWGKFLRVKVLIDISRPLKRWLRLKLD 191

Query: 135 ENVDSLWIQAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQETEPF-QFGNWLRFQGSN- 194
           ++ + + +  KYERLP+FCY CGR GH + DC  +   +     P  +FG+W+R    + 
Sbjct: 192 QSDNIVMVNLKYERLPEFCYACGRLGHSIGDCNDVEAKKAAVEGPITKFGSWMRASLQDK 251

Query: 195 --LKRKKKNRSPSFEKEES 210
             +K    +   S +KE S
Sbjct: 252 IQVKASSMSSGGSSDKERS 269

BLAST of Clc09G07350 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-14
Identity = 46/153 (30.07%), Postives = 75/153 (49.02%), Query Frame = 0

Query: 23  FLFKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRFLDIPLGFQ 82
           F F F   +  E V+R GPW  ++ ++ L+  +  I +    F    FWV+   IP  F 
Sbjct: 173 FHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQIPL----FPFIPFWVQIRGIPFQFL 232

Query: 83  NKFMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPGENVDSLWI 142
           N+ + + +G A+G+ L+ + N +     +  RV +  DIT PL      +    V++L +
Sbjct: 233 NRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTL-L 292

Query: 143 QAKYERLPDFCYGCGRTGHVVKDCPHLSEGEKQ 176
           + +YERL  FC  CG   H    C   + GE+Q
Sbjct: 293 RFRYERLRGFCEVCGMLTHDFGACLIQNGGEEQ 320

BLAST of Clc09G07350 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-07
Identity = 33/143 (23.08%), Postives = 56/143 (39.16%), Query Frame = 0

Query: 25  FKFDSRKDKEFVVRLGPWLMDNALLALEAPKANIKVSQMKFGKAAFWVRFLDIPLGFQNK 84
           F F S +    ++R GPW  ++ +  ++  +     S  +F +  FW++   IPL F   
Sbjct: 64  FLFQSEESMFSILRRGPWSFNDWMCVIQ--RWTKLHSDAEFKRIPFWIQIRGIPLRFLTA 123

Query: 85  FMAKRLGNAMGEFLEAECNQDNFCWGESLRVKIMIDITKPLPRGIWIEPGENVDSLWIQA 144
            +   +G  MG FLE    +D         V +                        ++ 
Sbjct: 124 RIITSIGERMGLFLETNLGRD---------VSV------------------------LKF 171

Query: 145 KYERLPDFCYGCGRTGHVVKDCP 168
           +YE+L +FC  CG   H   +CP
Sbjct: 184 QYEKLKNFCTTCGMLSHDASECP 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.7e-4342.13uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.12.1e-4044.94uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.11.4e-3644.13uncharacterized protein LOC111024874 [Momordica charantia][more]
TXG60547.11.3e-3438.42hypothetical protein EZV62_015120 [Acer yangbiense][more]
TXG48504.15.6e-3337.69hypothetical protein EZV62_024379 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.3e-4342.13uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ11.0e-4044.94uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX306.9e-3744.13uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5C7HTV06.4e-3538.42CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01512... [more]
A0A5C7GUN22.7e-3337.69CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02437... [more]
Match NameE-valueIdentityDescription
AT3G31430.13.6e-1430.07unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G42140.14.3e-0723.08zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 152..168
e-value: 0.0085
score: 24.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 153..167
score: 10.65817
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 12..117
e-value: 2.5E-17
score: 62.8
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 119..167
e-value: 6.1E-14
score: 51.5
NoneNo IPR availableGENE3D4.10.60.10coord: 144..180
e-value: 2.1E-5
score: 26.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..235
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 14..227
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 14..227
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 148..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G07350.1Clc09G07350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding