Clc03G01120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr03: 978370 .. 982276 (-)
RNA-Seq Expression	Clc03G01120
Synteny	Clc03G01120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAAATATGCTTAAAATCAACCTCATCTATCAACACCTGTTTACAATAGTTAGGTCAGTACGCTACTTAGATCTTCTGAAACACGACAGAGGTGGCCCTGTCGTCAGTGTTGGAGGAAAAACTAGTTAAGCCATAAACTTCTCTTTGTTGATGTACTGGAAGGAAAGGCTTTGAGCAGAAGTGTAACCGATGGTTTGAGGGAGAGATGCACTCATGGAATCAAAATTCAACATTTCTAATCAGAAAACCAAGGAGGCAAATAAATGCATCTAGGGAGCCAGGTAGGGGATCCACTTTCATTCCTCTTCTTCATTGTGGGCGACATGCTAAGGTATGATAGAATAATAAACCAATGATGGCAGTTCGGAAGGTTTAGTTATTAGAAATTGAGAAGAGGTTTATAAAATAAAAATAATAAAAAATAATAGTAATAATAATAAAAAAGTAATCTTTTCTTGAGTTTAAATGTGCTGAAGTGGGATTCAAAGCTTAAGATGCCGATTGAGCATTTAACGCTCAAATTGGCTTTGGAAGACCTTTACAATGTTTTCACCCACCATGCAAACGTTACCTTTACTCTTGTCCTAAAAAGTAGCATCACATGTTCAAGGTACACAACATCTGACTATAGATAAATCGAGAAAGCTCTAATGTGTGGAATCAATATACCAACCAATCAAGTGAAGAGTGTAGTATAGGCTGATCGTGAAGTGGGTGTCTTAACTTCATCTTGTTTGGGAGACAAAGGTAACCAAAGGACTTCTTTCTAAAAACCAACGGTGGAAAAAGAGATCTGGCAGCTGGAAAGTTGCAAGATATTTTCTAAAAGTCTAAAATCACCATTATGCAAAGCTGTTCTGGCAAATTTCTCCAAACCTATCACATCTATTTTTCCCATGCCTACACAATCAGCAGCTATAAATTGACGAGTGATCAGAAATATAAAAAATGAAGGTCTGCAAGAATTGGGCATTTGAGCAAAATGAATGATAACCTTATGTCAAAACGTGTTAGACAATTTCTTAAGGAAGCTGATCGATCAGATCTGGCTGCAATATTTATACAAACAAAAAAAAGGTGTTTCACTAAAGAACTATGGGGGGGAAATGGTAGGACATAGTCCTTGCCTTGGAGAGAACATTTCTTTCTCAAAAAACAAAAGGTCTTCATTGATATTTGATAAGTTACTACAATATAAAAGAATAATCCCTCATATAATCCCTCATACAAAGAAATGCACATGATAGAACATTCTTGCCCAAACTCAACAAAAGAACAAACTGGGAGAAAAGAGTGAAGAAAAGGAAACTTTTAGATGGTGATCTAAAATCAGGAATTTGGAAACCAGGGTTCAATGCATAATAGAGTTGTATTCCATGTTTTCACTCGTTCTGAGTGTAGAACCTTCTAATACACTTTTAAAAAAAATCACTTTCAGACTCACATAATCCAAGAGAAAAAAAAAGGCAAAACAAATTTCACTGAACCAGTGATTTAATGAATCTAATAACAAGAAACTGAATCTGATTGGATACCGAATAAGCCCTAAAATACACCAAAATGAGGATTTGTGTTTAGCCACATCAAATCCTTCAAACCATCCAAGACATTTGCCTGTGAAGATCCTTTGACTACCTTCAAACCGAACTTATATAATTGCTTTAATTCACCTAAATCAACTCTTAAACTTCAATTCTCTAAAAGACATTGCAAAATATAGTTAATAGAACATTTGTCAAAAACCTCAAACTCGAAAACAATTACACAAGGTGCTGCCAGATTTCCAGAATAACGACCAATGAAAATAAGATATGGTTTTGATCTTCATTACCTTTCAACTTTCATAAAACTGCTAAGTTTTACGAACTGCTGCTTGTACAGCCAGCAAAATGGCTTTCATTAATAAATTTTCGGTGTTGTTTACCCTTAGCAAGATCCAAACAAACTCATTGAACTAATAGGGAATTCTAGACTTCCAGCTAACCTTGCACAAAGACTAGGATAACAAGAGAAAACTAATAAGCTCAGTGACTAAGGAAATCACCGAGAAAACACCTGAAATACTCTTTTGCCTTGGATATACTATACAAAAATCTAGTAAACTATTAGATACTTGAGCACCTTGGAGAACCACACCCCAAAAGCTAGCTATTGAGGTGGGAAAGCCAAGCCACTTAAGTGCCACATTGGTCATCCCATTCTAACCAGTGTGGAATAAAGGTAGCCCATACTACCTTGGTTCCTAACATAAACCTTCCAGCAAAGCAAGGAACTAAATTCCTGGATTTCCTCCTGAAGATTTCTTCTAGCAGCAAACTTCCAAGACTTCATTGTTCTATCCAAAGCATCATAAATTAAACAAAGAATCCTACAAACCATCCAAAAATATTTGAAAACTGAGGAAAACACCTTCCTTCTCCCAAAAATAGGCCCCACCTTCCTTCTCCCACTGTAAAACGAGAGAATTTGTCAAAGAAACACCCCAAAATAATAAGATATTCCACCAAGAACAAACTTCCGCTACTACCTCCGAGAGAAACATTGCTAAATTGAAAGGAATATCTCAAATCATCCTCAGATCAGAGTAGGATATCGAAACCAGATCCTTGAGAAGAAGCCCAGATCAAAAATCAATTCCCTGCTGCTAGATTTCATAATTTATGTAATGGAACCTTAACCTAAAAGGGTAAGTGAACACTAGGGTGAACAAATTAGGGTTTGAAAACTGGATGCAAAAAGGAAAGTAATCAACTTGGAACTTCAAGAGCTTAGAGATGCATAAGTGCTGGAAAATATGGGTGAAGGGTTCATTTGGGAGTGCTTTTAACCATGGTAAGAGTACTTTAAGCAGTTAAGAGTGCTTTTTTTTTATATCTATGAGTGTCCAGGCCAGACGCGTACTTCGATTAATCTCACGGGACAACCCGCCTGACCTTACATCATTTGGGTGTCAAGGAAACTCATAGAATATTAATTCCTAAGTAAGTGGTCACTATGGATTGAACCCATGACCTTTTAGTCATTTATTGAGATAATGTCTCCTTTTCTACCACTAGGCCAACCCATGATGGTTGAGTAGTTAAAAATGCTTCCTACCTCAAAAGTTTGAGATTTATAAATACAATTTGAAAGCATCTATCAAAAAATCCAAATGCACACTTAGAAGTTCTTTTTAAACAAACAAATCAGTGGTGCTCTAATCAAGTGCTTTTGGTTTACACAATCTCCATGACTCACATTAGTCCTTAATAACACTCTGTACACATTTTCCTCTCCTTAATTTTTCTCTCTAACTTCCTTCCTACACACTTTTTATCACTAATCTCTCTACACACACTTTCTCTCACTAACTTCTCATAACAAACTCTCAGCAATTTCCCTCTGAACTTTCTCACACTAATTACAGCAGTCTCTCTCTATACATACTATTTCTTTCTTTACATGCTCTCTCCCCCTTATTTCGCTATTTCTATAGATTTAATCATCATCACAGCAAATTTTTAGCGAGCTTGCAAACAAACTAGAAATCAAAATCCCCCAGGAGATGCTTTTTCCCCTAGGAGATTCTTTTTTTTATTTGATAGGATGCAAAAGGGATGTACCATATATCTGAATTGTTCTCTACTTGGAATGAAAGCAAAAGAGTCACAAGAAGAAGACGAACCCAGCTCCAGACTTGGGAGGGAAGAAGAGGAGGAGGAAAAGCAAAAGACAAGAAACGGACAAAAAGGAACAAAAAGAATATGTATCTAAACATGATGAATGAGGACGATGGTTAAAAAGATGTAGAAGGCTTTTTATGGCAAATAAATTGGGGTTGGGCTGGGAAGAGGTCCTGAATTCTGCCGGTTATCATTTGTTAGGGTGCATTTCATAGTTCTCACCATAACTACGCTCCCTCCCCAG

mRNA sequence

ACTAAATATGCTTAAAATCAACCTCATCTATCAACACCTGTTTACAATAGTTAGGTCAGTACGCTACTTAGATCTTCTGAAACACGACAGAGGTGGCCCTGTCGTCAGTGTTGGAGGAAAAACTAGTTAAGCCATAAACTTCTCTTTGTTGATGTACTGGAAGGAAAGGCTTTGAGCAGAAGTGTAACCGATGGTTTGAGGGAGAGATGCACTCATGGAATCAAAATTCAACATTTCTAATCAGAAAACCAAGGAGGCAAATAAATGCATCTAGGGAGCCAGGTAGGGGATCCACTTTCATTCCTCTTCTTCATTGTGGGCGACATGCTAAGCAAAAGAGTCACAAGAAGAAGACGAACCCAGCTCCAGACTTGGGAGGGAAGAAGAGGAGGAGGAAAAGCAAAAGACAAGAAACGGACAAAAAGGAACAAAAAGAATATGTATCTAAACATGATGAATGAGGACGATGGTTAAAAAGATGTAGAAGGCTTTTTATGGCAAATAAATTGGGGTTGGGCTGGGAAGAGGTCCTGAATTCTGCCGGTTATCATTTGTTAGGGTGCATTTCATAGTTCTCACCATAACTACGCTCCCTCCCCAG

Coding sequence (CDS)

ATGCACTCATGGAATCAAAATTCAACATTTCTAATCAGAAAACCAAGGAGGCAAATAAATGCATCTAGGGAGCCAGGTAGGGGATCCACTTTCATTCCTCTTCTTCATTGTGGGCGACATGCTAAGCAAAAGAGTCACAAGAAGAAGACGAACCCAGCTCCAGACTTGGGAGGGAAGAAGAGGAGGAGGAAAAGCAAAAGACAAGAAACGGACAAAAAGGAACAAAAAGAATATGTATCTAAACATGATGAATGA

Protein sequence

MHSWNQNSTFLIRKPRRQINASREPGRGSTFIPLLHCGRHAKQKSHKKKTNPAPDLGGKKRRRKSKRQETDKKEQKEYVSKHDE

Homology

The following BLAST results are available for this feature:

BLAST of Clc03G01120 vs.


Match Name	E-value	Identity	Description

BLAST of Clc03G01120 vs.


Match Name	E-value	Identity	Description

BLAST of Clc03G01120 vs.


Match Name	E-value	Identity	Description

BLAST of Clc03G01120 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01120.1	Clc03G01120.1	mRNA