Clc01G21720 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G21720
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 33180624 .. 33181583 (+)
RNA-Seq Expression	Clc01G21720
Synteny	Clc01G21720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGAACAATTCTATATTAAGTGATCTCATAAAAAATTTTCTAGAAAACATGTGAGTAAGTGTAAAATATTCTGAAAGAACTCGTGTTGATTTGTAGGAATAGTCTTTAGTCATGGAAGCAGTTTAAGACAAGTAAATAGTAAGACTAGGTTGCAAAGAAATGTCGAAATCATTAAGTGGCAAATTCAAATTTTAAATTTTGGATAACGTTACAAACATCTCCATAGGTTGTTTGAAACAACCTCGTTGAATAATTTTCATTAGCCTTGGGCACATCTACATGTTCTTTGTCCACTACAAACAAAAATAAGCAAAAAGTCCACTATTTAGAATTCTAATCATGTGATGGTTTGCACGTTGAACAAACTCAAAGCCAATGGCACACTAAATATTAGCAACAAAACCAAAGCCTAAAGCCACAATCATTCGCTCTGTTTCATTTGACAAGAAAAATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAGTTTTGCCTTTTTCACTCAAGAAAATTTGGTCTATAAAGTTTCAATATTGTGTCTATGGTTTTTAAAAAGTATGGAGATTAG

mRNA sequence

CTTAGAACAATTCTATATTAAGTGATCTCATAAAAAATTTTCTAGAAAACATGTGAGTAAGTGTAAAATATTCTGAAAGAACTCGTGTTGATTTGTAGGAATAGTCTTTAGTCATGGAAGCAGTTTAAGACAAGTAAATAGTAAGACTAGGTTGCAAAGAAATGTCGAAATCATTAAGTGGCAAATTCAAATTTTAAATTTTGGATAACGTTACAAACATCTCCATAGGTTGTTTGAAACAACCTCGTTGAATAATTTTCATTAGCCTTGGGCACATCTACATGTTCTTTGTCCACTACAAACAAAAATAAGCAAAAAGTCCACTATTTAGAATTCTAATCATGTGATGGTTTGCACGTTGAACAAACTCAAAGCCAATGGCACACTAAATATTAGCAACAAAACCAAAGCCTAAAGCCACAATCATTCGCTCTGTTTCATTTGACAAGAAAAATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAGTTTTGCCTTTTTCACTCAAGAAAATTTGGTCTATAAAGTTTCAATATTGTGTCTATGGTTTTTAAAAAGTATGGAGATTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

Homology

[Close]

BLAST of Clc01G21720 vs. NCBI nr
Match: KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 113/139 (81.29%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICC+VEDLNLALPIE IA          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDS 120
           EVEHGPPPLP+RID SI+KPADLCKLPK TIVVSKQQLELILR SK+FGSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPE 138
           F+VDD CPRW PALPTIPE
Sbjct: 121 FKVDDGCPRWHPALPTIPE 132

[Close]

BLAST of Clc01G21720 vs. NCBI nr
Match: KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 4.2e-55
Identity = 112/141 (79.43%), Postives = 120/141 (85.11%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HFPPLQKIKGFICC+VE L+L LPI  +A  AY   K  SQAFTTSSAV EV
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60

Query: 61  EHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDSFE 120
           +H PPPLP+RID SI+KPAD  KLPKATIVVSKQQLELILR SK+FGSKGIAVQFSD F+
Sbjct: 61  QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120

Query: 121 VDDRCPRWRPALPTIPEVRNY 142
           VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137

[Close]

BLAST of Clc01G21720 vs. NCBI nr
Match: KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 105/144 (72.92%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HF PLQK+K  ICC+ EDL+LALPIEKIA GAY          TTSSAVLEV
Sbjct: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAY----------TTSSAVLEV 60

Query: 61  EHGPPPLPLRI--DDSIIKPADLCKLPK-ATIVVSKQQLELILRNSKSFGSKGIAVQFSD 120
           + G PPLP+ I  DD++ KP  LCKLPK  TIVVSKQQLELILRNS+ F SKGIAVQFSD
Sbjct: 61  DRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSD 120

Query: 121 SFEVDDRCPRWRPALPTIPEVRNY 142
           SFEVDDRCPRW PALPTI EV NY
Sbjct: 121 SFEVDDRCPRWCPALPTILEVHNY 134

[Close]

BLAST of Clc01G21720 vs. NCBI nr
Match: KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-27
Identity = 78/145 (53.79%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCI++PH                  +LA+P+EKIA     GLKLT       SAVLEV
Sbjct: 1   MGNCISSPHL----------------YDLAVPVEKIA-----GLKLT-------SAVLEV 60

Query: 61  EHGPPPLPLRI----DDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFS 120
             G    P  +    DD I KPA LCKLPKATIVVSK+QLE +L NS+ FGS+GIAVQFS
Sbjct: 61  GRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSQQFGSQGIAVQFS 117

Query: 121 DSFEVDDRCPRWRPALPTIPEVRNY 142
           DSF+ D  C RW P LPTI EV NY
Sbjct: 121 DSFKFDRSCSRWCPVLPTILEVHNY 117

[Close]

BLAST of Clc01G21720 vs. NCBI nr
Match: KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 61/152 (40.13%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAF-------T 60
           MGNCI+   +   ++ K  I    E +   +  ++KI  G Y G  L   A         
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVQKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  TSSAVLEVEHGPPPL--PLRID-DSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSK 120
           T     EV H  P L  P R++  S +   + C   K  IVV++QQLEL+LRNSK F SK
Sbjct: 61  TRLEPGEVYHLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEVR +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVRKF 150

[Close]

BLAST of Clc01G21720 vs. ExPASy TrEMBL
Match: A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 117/143 (81.82%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICC+VEDLNLALPIE IA          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDS 120
           EVEHGPPPLP+RID SI+KPADLCKLPK TIVVSKQQLELILR SK+FGSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Clc01G21720 vs. ExPASy TrEMBL
Match: A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 112/141 (79.43%), Postives = 120/141 (85.11%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HFPPLQKIKGFICC+VE L+L LPI  +A  AY   K  SQAFTTSSAV EV
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60

Query: 61  EHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDSFE 120
           +H PPPLP+RID SI+KPAD  KLPKATIVVSKQQLELILR SK+FGSKGIAVQFSD F+
Sbjct: 61  QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120

Query: 121 VDDRCPRWRPALPTIPEVRNY 142
           VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137

[Close]

BLAST of Clc01G21720 vs. ExPASy TrEMBL
Match: B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++KI  G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PLRID-DSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LRNSK F SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of Clc01G21720 vs. ExPASy TrEMBL
Match: A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAFTTS----S 60
           MGNCI+       ++ K  I    E +   + P++KI  G Y G  L ++A   +     
Sbjct: 1   MGNCIDFMPCSSGERSKVLIHNGGEKEFKSSTPVKKITSGRYGGYILVNRALPYAPLPPD 60

Query: 61  AVL---EVEHGPPPL--PLRID-DSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSK 120
            VL   EV H  PPL  P R++  S +   + C   K  IVV++QQLEL+LRNSK    +
Sbjct: 61  TVLEPGEVYHLMPPLDQPSRLEVSSKLTGQEACAGRKVKIVVTRQQLELLLRNSKQLKLR 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           GIAVQFS+SF+   R  +W+P+L TIPEV
Sbjct: 121 GIAVQFSESFKEGKR--KWQPSLVTIPEV 147

[Close]

BLAST of Clc01G21720 vs. ExPASy TrEMBL
Match: A0A6A1W907 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 51/157 (32.48%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV-- 60
           MGNC +    P  +KI+  +  + E + +   P+EKI  G Y G KL   +   S  +  
Sbjct: 1   MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHSQPDSPLLPD 60

Query: 61  -------------LEVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSK 120
                        L+ +   PP+P R  +      +  K  K  IVV+K QLEL+LR++ 
Sbjct: 61  ARLQPGELYYLVPLQAQPHHPPIPSRTANQ-----ETGKQKKVKIVVTKGQLELLLRSTD 120

Query: 121 SFGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
            F SK IA+    SF+V +   +WRP+L  IPEV ++
Sbjct: 121 KFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152

The following BLAST results are available for this feature:

BLAST of Clc01G21720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647639.1	1.9e-55	81.29	hypothetical protein Csa_004428 [Cucumis sativus]	[more]
KAA0025575.1	4.2e-55	79.43	hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245...	[more]
KAG6603830.1	8.5e-48	72.92	hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594706.1	3.7e-27	53.79	hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF9851460.1	1.6e-14	40.13	hypothetical protein H0E87_015599 [Populus deltoides]	[more]

BLAST of Clc01G21720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G21720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP3	2.0e-58	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1	[more]
A0A5D3CLY8	2.0e-55	79.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
B9HD50	5.6e-13	37.50	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ...	[more]
A0A5N5M953	2.8e-12	40.27	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1	[more]
A0A6A1W907	1.8e-11	32.48	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1	[more]

BLAST of Clc01G21720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148:SF50	SUBFAMILY NOT NAMED	coord: 1..140
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G21720.1	Clc01G21720.1	mRNA