Sed0027353 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAAACCCCATTATGAAATGAATGTTCATGCTTGATTCAGAGTTGATTCCATTTTCTTAAGGAACTTCTCTGTTCTGGAAGGCTCTGTTTTTCAAAGGAAATATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA AAAGAAACCCCATTATGAAATGAATGTTCATGCTTGATTCAGAGTTGATTCCATTTTCTTAAGGAACTTCTCTGTTCTGGAAGGCTCTGTTTTTCAAAGGAAATATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA ATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLRIGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT Homology
BLAST of Sed0027353 vs. NCBI nr
Match: XP_023001322.1 (uncharacterized protein LOC111495486 [Cucurbita maxima]) HSP 1 Score: 171.0 bits (432), Expect = 5.8e-39 Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of Sed0027353 vs. NCBI nr
Match: KAG7019685.1 (hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169.1 bits (427), Expect = 2.2e-38 Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of Sed0027353 vs. NCBI nr
Match: KAG6584084.1 (hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38 Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of Sed0027353 vs. NCBI nr
Match: XP_022140046.1 (uncharacterized protein LOC111010796 [Momordica charantia]) HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37 Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 0
BLAST of Sed0027353 vs. NCBI nr
Match: KGN64527.1 (hypothetical protein Csa_013452 [Cucumis sativus]) HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A6J1KG77 (uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39 Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A6J1CEK3 (uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010796 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 5.3e-38 Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 0
BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A0A0LUT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A540M3N5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021032 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20 Identity = 60/99 (60.61%), Postives = 78/99 (78.79%), Query Frame = 0
BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: W9RFE3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20 Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0
BLAST of Sed0027353 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08 Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Sed0027353 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07 Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 0
BLAST of Sed0027353 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 8.9e-06 Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|