Cla97C06G127470 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G127470
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionMonocarboxylate transporter 9
LocationCla97Chr06: 29003965 .. 29005535 (+)
RNA-Seq ExpressionCla97C06G127470
SyntenyCla97C06G127470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATAAAATGCGCATACAAGGAGATGGGAAAGGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGGTTTCTCTTCGGGGAAGCTCCTACAGATTAGTCTGAAAATATTTAATTGCGTTTGAAGCCTATGTTTTATTATTGTTGCTTTTACAGTTTGTACTAGTATTTTTCATATTCAAAGTTGTTTAAAAAAGAGTCTACCCGAAAAACAAACAATAATTTATGTTTCTTGTTTACGCTTTCATCTCTTAATAACCGAGGAAAACAGAGTTCGTCTCAAGTAGAGAGCTGTAATATCTGGGTTGAACCATTTTCCAGGGGTTCTAAATGCAATATTCGTTACTGCAGCTGCCGTTGAAAGCAACCTGTCTTACAACATATAAGGGCTTAATTTAGATACCAGCAACAATGCCATTCAAATTGTAAAAAATATTTGTCATTGTGAGGATATTGTTTGATTGGTGCACAAGTGAAACGGGGTTTGTGAGACCTGAGGTAAGCAAAAAGGCAACAGCCGGGGGAGCTTGAAAGTATCATCCACTGAAAGAACTATATGCTCTTTGATAGAAGATACTGCGGGGTTAACACAGCTTCAAATTTGGCGCGCAGGCGTTAGGATGTTGGAAAAATACTCAGAATAGTAACCGAAATATACAGACAGGAAAGAAGATAACAGAGGTATTTTTCTGTGAGCACAGAGAGGAAAGAAGATAACTGAGGTATCTTTCTGGAAAATTGTTCACTATGTTTATGAAGAAGAAATGGTTGGGACATTCCAACGGAAAAAAATATTTCAAGTGGAATGCGAGCACAGTTACCCGAATCTACCTGTCCGGACGGTGGCAGCGTGTGTGATTTCCACTACAAATACAATTTAAAAACTCCCCTTATATGTCTTGGTATTTATACCCTCTTGACAGTGCTCAATGTTCCAATGTGGAATATTACTCCCTCCTTTTCATTTCACTTTTGCTATGGGTCTTTGATCCAAGTCATTTCCAACGGTTCCTATAGACTGCATCGCATATCGATACATTCTGCTCTTATAAGGATTTTGATTTCTTTTGCAACACAGTTTTAATCTTCAAAGTGAGAAACAATTTGCGAGTGTTTCTTTTCCATTATCTATTATTTAGATTATGGTGCCCCATGGTCATTTAGTATGTTGTTGACTACTAACTTCAAATATAATATACAAACTTTGTACCTGACGAGAATCAGAGTTCTTAAGGTGAATAGTTCAAAAACAGTTCGGTATAGACTAACCGATTGTAATATTCAAGCATTGTTCTCTTAATCCATCAATGCATTTAACTTCATTTTCAAATTTTCCTTAACAAACATCATAACTTAGTTAATTGAAGAACTTCATTCATTCTCCTTGGCCACAAAAAACTTATGGTGGATTTCCCACTCAATTTACGTAAATGATCTAAGATATATTTCAGCTGTGGTGGTGAAGGGAACTTAGGGGAGGAAGGATCTCTGAAGCACTGA

mRNA sequence

ATGCCTATAAAATGCGCATACAAGGAGATGGGAAAGGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGCTGTGGTGGTGAAGGGAACTTAGGGGAGGAAGGATCTCTGAAGCACTGA

Coding sequence (CDS)

ATGCCTATAAAATGCGCATACAAGGAGATGGGAAAGGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGCTGTGGTGGTGAAGGGAACTTAGGGGAGGAAGGATCTCTGAAGCACTGA

Protein sequence

MPIKCAYKEMGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEGCGGEGNLGEEGSLKH
Homology
[Close]
BLAST of Cla97C06G127470 vs. NCBI nr
Match: KAA0057788.1 (monocarboxylate transporter 9 [Cucumis melo var. makuwa] >TYJ98472.1 monocarboxylate transporter 9 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 2  PIKCAYKEMGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          PIKCA K   KARSRAV TERTILSPFTKEYRVLAA+SGIRLFLEG
Sbjct: 30 PIKCASKHHSKARSRAVRTERTILSPFTKEYRVLAAYSGIRLFLEG 75

[Close]
BLAST of Cla97C06G127470 vs. NCBI nr
Match: OMO58838.1 (hypothetical protein CCACVL1_25319 [Corchorus capsularis])

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-09
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAASSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. NCBI nr
Match: OMO58839.1 (hypothetical protein CCACVL1_25320, partial [Corchorus capsularis])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. NCBI nr
Match: OMP02649.1 (monocarboxylate transporter 9 [Corchorus olitorius])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. NCBI nr
Match: GAY49587.1 (hypothetical protein CUMW_120240 [Citrus unshiu])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 13 ARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEGC 49
          +RSRAVSTERTILSPFTKEYRVLAA SGIRLFLEGC
Sbjct: 8  SRSRAVSTERTILSPFTKEYRVLAAESGIRLFLEGC 43

[Close]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match: A0A5A7URK2 (Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00740 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 2  PIKCAYKEMGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          PIKCA K   KARSRAV TERTILSPFTKEYRVLAA+SGIRLFLEG
Sbjct: 30 PIKCASKHHSKARSRAVRTERTILSPFTKEYRVLAAYSGIRLFLEG 75

[Close]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match: A0A1R3GL63 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25319 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAASSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match: A0A1R3GLA3 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_25320 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match: A0A1R3K6E7 (Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 10 MGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 48
          MGKARSRAVSTERTILSPFTKEYRVLAA SGIRLFL G
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGG 38

[Close]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match: A0A2H5PB56 (DYW_deaminase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_120240 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 13 ARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEGC 49
          +RSRAVSTERTILSPFTKEYRVLAA SGIRLFLEGC
Sbjct: 8  SRSRAVSTERTILSPFTKEYRVLAAESGIRLFLEGC 43

The following BLAST results are available for this feature:
BLAST of Cla97C06G127470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057788.19.7e-1286.96monocarboxylate transporter 9 [Cucumis melo var. makuwa] >TYJ98472.1 monocarboxy... [more]
OMO58838.17.7e-0994.74hypothetical protein CCACVL1_25319 [Corchorus capsularis][more]
OMO58839.11.3e-0894.74hypothetical protein CCACVL1_25320, partial [Corchorus capsularis][more]
OMP02649.11.3e-0894.74monocarboxylate transporter 9 [Corchorus olitorius][more]
GAY49587.11.3e-0894.44hypothetical protein CUMW_120240 [Citrus unshiu][more]
BLAST of Cla97C06G127470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URK24.7e-1286.96Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1R3GL633.7e-0994.74Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25319 PE=4 ... [more]
A0A1R3GLA36.3e-0994.74Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... [more]
A0A1R3K6E76.3e-0994.74Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=... [more]
A0A2H5PB566.3e-0994.44DYW_deaminase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_120240... [more]
BLAST of Cla97C06G127470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G127470.1Cla97C06G127470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding