Sed0010324 (gene) Chayote v1

Overview


Name	Sed0010324
Type	gene
Organism	Sechium edule (Chayote v1)
Description	28S ribosomal S34, mitochondrial
Location	LG01: 6282456 .. 6285307 (-)
RNA-Seq Expression	Sed0010324
Synteny	Sed0010324

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATTACACAAAAAAAAAAAAAATCTCCATTTTCACTTGCTTTCCTAAACCCTGGGTTGTAGAGGCAACGAAATAGCGAAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGCCAATGTCAGTCGCGAACAGAACTGCGATCAGTCGAACCCTAGACTTGTCGAGGTTTTCTTCTACCTTTTTCAAAAACTTCAGCACTTCTTCATCGCCGTCAGCCTCCAATGCCGACACTGCTCCGACTAAAACCAAGCCCAAGAAGAAGAAGCGGAAGAATCTGTTCGAAGTGGTTCAGTTTTTGCCCAATTGGGGTGTAGGGTACCATGTCGCCAAGGCTCATTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGGTCTCTCTCTCTCTCTCTCTCTCTTCATCTGCTTTTGTTTCTTTCATTTTGATGCTGCTTCGTTTCTGATTTTTTAATCTCCCCCTCTATAATCTGCTCAAGATTTGGAATAAATGATGTGGAGTTTTTGCCAGTGGATTTAGGTTGTTTACGGGTTTTGTTTCGGGTAAAAACTCAATGGGTTTCTGTAATTTCTTTGTTCTTTTACTAAGATTGATAGAATTTGAGACTTTGAAGGGTTTGAATCTGAGATTTTCCCTATAATTTCTTATAATTAAATGGGAAGTTTAACATTAGGTTTCAGGGTTTAAGCTTTCTTTTTTTGACTTTCTCTACAGAGTGGCAATCATGGCAAGGCATGGGGCATCGCTCATAAAGATGGTTAGTGATTCTATATTCACAAATTCTGGGTTCTAAATCGTTGTTGGAATTTCATTTTGGATTTTTTATGGAATGTTTATTTACAAGAATGAGAATTCGTGCATACTTCCATCTCTTATACGATCTGTTTATATTGGAAAAATTATATAATTTGGGACCATCACATTTGATTTAGATGCATGATTGGGAAAGATGAATGCTAGATCATTATTGTTAATTGGTTTACTTCATGCCACCAAATTCCATCACAATTTAGTACTTATTTTCTAAAGTCTGCTAGCATTCCAGTTTTGAGGTTAGTGTTTTGAAAAGCTGAAAGGATACTAAGGCACAACAGCCCTCTAGAGCCAAAAGTGCAAGGTGCAGGCTAAAAAAAACACAAAATATGTGTGTATACACAATAAAAGCACTTTTATGGATAAAAATGAAGTTTTTTATTATTTTTATTTTTTTTATAGGAAACAAATCTTTGATTGTTACATAAAAGGAATCCAATAGTGTAATATAATCATTACATGAAACTTTGCCAATGAGACAATAGTGTGGAGAGACTATAATCCTTGAAAGGATGAGTAGCATGAGCCCAATTCAGAAATGAAGTTCTAACCAAGAATAATATATAAAACATACATAACATTTCAATTATTAACCTTCATTTCATGGAAAGAGCTAAAGTTTAACTAAGAATAATATAAAAAGCATACATAAGATTCACTTATTAATCTTTCATTTCTTTTTTTTGAATAAGAAACAATTTCATTGATGCATGAAATTACAATATTAATCTTTCATTTCATGGAAAGAAACGAAGTTTTAATCAAGAAAAAACATACATAAGATTCAACTACTATCTTTTAAACATAGTGTTGTGAAGACGAATCCACAGAAGATGGTGTGGATGGAAAATTTGAGAATGTGTAGCTAGAGAAGCGAGAGGATATGAGTTGCGGAGGAAAGAAAAAAGGAAGCGAGACTGTTGTTTTTGTGAGTTGAAGAATTAAGTCATTTAAGGTATTGAATGTTTCAAATAAGTTATCGTGTGCTTCGAATGACTTTGTACAAGGAGATAAAATAGTAAAAGGAGTATATAAAACACAAAATCCCACGAGGAGTGTGCCTTTGCGTGCCTCGGGGCTTCACAAAAAGCACCAAAAGGTGCGCGCCTTATTAGGCGTGCCTTGCCTTGTGCCTTTTGCCTAGGCACGTGTTTGAGTACATCTTTTAAAACACTGTTTGAGGCAAGGTCCTGAAAGCTCAAGCTGGAGTCAGGTTTAGCAAGTTCCTTTCAAAGCCTCCAACAAGGCGACTGCAGACTTGGCGATCATATAGGCAACCATTATTGTATTGCTTACAAATGAATGTTAAAATTTGAGTTTCTATAGACTGATATTTCTGTATGTCAGAGAACGTGAAGAAACTTCAGGATGTTTTCTGTATTTATTTGTTAGATACTTTTCTTACTAATATTTCTATGTAGTGCATAATTCCCATCGGGATTCCTTAGTTTATTCCTTTTCATCTCCAAGTGGAGATCTATCACCTCAATGAAATCATTTCTTCTTATTCTGAAAAAGACATATTTCTATATGACATTGTTGCTGTCTGCAATCTACTTCCATCCATGGCAGAGATTGAATAATGTTACAAAAATTTGTTCCAGGCACACCCATTGCAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCACAAGCTTGCCAAGAGCATCAGAGAACGAATCGACCACAATGGCGAATTCGGGAGAAAGGAACCCATCATCAGCTGAAGTTCAAACTTCATGATTGCAGAGGAATTGAAGTTGCTCTTTTTGGTCAACCATTCACAGAGTTCTATTCTCTTCAGATTAGCAGTCCTTAAATGTTGTCAGGTTTCTTAAGTCCATTATATGAGGGGCATTCTGTGTTTCCTTGTCTCCGAGATAAAAGAAAGATCAATCATCCTGAACTAAGTGTACGTTGAATTGATTTTCTATTCTCAGTTACTAGTGGATTTTTATGTTAAACAAAGGTTGAAGAATCTAGTTGGTATTTGTGAATCTGTGTTTTTTTC

mRNA sequence

GCAATTACACAAAAAAAAAAAAAATCTCCATTTTCACTTGCTTTCCTAAACCCTGGGTTGTAGAGGCAACGAAATAGCGAAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGCCAATGTCAGTCGCGAACAGAACTGCGATCAGTCGAACCCTAGACTTGTCGAGGTTTTCTTCTACCTTTTTCAAAAACTTCAGCACTTCTTCATCGCCGTCAGCCTCCAATGCCGACACTGCTCCGACTAAAACCAAGCCCAAGAAGAAGAAGCGGAAGAATCTGTTCGAAGTGGTTCAGTTTTTGCCCAATTGGGGTGTAGGGTACCATGTCGCCAAGGCTCATTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCAATCATGGCAAGGCATGGGGCATCGCTCATAAAGATGGCACACCCATTGCAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCACAAGCTTGCCAAGAGCATCAGAGAACGAATCGACCACAATGGCGAATTCGGGAGAAAGGAACCCATCATCAGCTGAAGTTCAAACTTCATGATTGCAGAGGAATTGAAGTTGCTCTTTTTGGTCAACCATTCACAGAGTTCTATTCTCTTCAGATTAGCAGTCCTTAAATGTTGTCAGGTTTCTTAAGTCCATTATATGAGGGGCATTCTGTGTTTCCTTGTCTCCGAGATAAAAGAAAGATCAATCATCCTGAACTAAGTGTACGTTGAATTGATTTTCTATTCTCAGTTACTAGTGGATTTTTATGTTAAACAAAGGTTGAAGAATCTAGTTGGTATTTGTGAATCTGTGTTTTTTTC

Coding sequence (CDS)

ATGTCAGTCGCGAACAGAACTGCGATCAGTCGAACCCTAGACTTGTCGAGGTTTTCTTCTACCTTTTTCAAAAACTTCAGCACTTCTTCATCGCCGTCAGCCTCCAATGCCGACACTGCTCCGACTAAAACCAAGCCCAAGAAGAAGAAGCGGAAGAATCTGTTCGAAGTGGTTCAGTTTTTGCCCAATTGGGGTGTAGGGTACCATGTCGCCAAGGCTCATTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCAATCATGGCAAGGCATGGGGCATCGCTCATAAAGATGGCACACCCATTGCAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCACAAGCTTGCCAAGAGCATCAGAGAACGAATCGACCACAATGGCGAATTCGGGAGAAAGGAACCCATCATCAGCTGAAGTTCAAACTTCATGA

Protein sequence

MSVANRTAISRTLDLSRFSSTFFKNFSTSSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

Homology

[Close]

BLAST of Sed0010324 vs. NCBI nr
Match: XP_023532313.1 (uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.9e-56
Identity = 118/158 (74.68%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SLPR+SENE TTM N GE NP SAE QTS
Sbjct: 121 HKRCWKYIPSLPRSSENEPTTMTNLGESNP-SAEAQTS 156

[Close]

BLAST of Sed0010324 vs. NCBI nr
Match: XP_023007567.1 (uncharacterized protein LOC111500023 [Cucurbita maxima])

HSP 1 Score: 229.6 bits (584), Expect = 1.9e-56
Identity = 119/158 (75.32%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SL R+SENE TTM N GE NP SAEVQTS
Sbjct: 121 HKRCWKYIPSLSRSSENEPTTMTNLGESNP-SAEVQTS 156

[Close]

BLAST of Sed0010324 vs. NCBI nr
Match: XP_022947647.1 (uncharacterized protein LOC111451448 [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 9.4e-56
Identity = 117/158 (74.05%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SLPR+ ENE TTM N GE NP SAEVQ+S
Sbjct: 121 HKRCWKYIPSLPRSLENEPTTMTNLGESNP-SAEVQSS 156

[Close]

BLAST of Sed0010324 vs. NCBI nr
Match: KAG6605433.1 (hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035381.1 hypothetical protein SDJN02_02177 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-55
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SL R+ ENE TTM N GE NP SAEVQ+S
Sbjct: 121 HKRCWKYIPSLSRSLENEPTTMTNLGESNP-SAEVQSS 156

[Close]

BLAST of Sed0010324 vs. NCBI nr
Match: XP_038900676.1 (uncharacterized protein LOC120087826 [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 121/156 (77.56%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 3   VANRTAISRTLDLSRFSSTFFKNFSTSS---SPSASNADTAPTKTKPKKKKRKNLFEVVQ 62
           VANRTAISR LD SR SSTF + FSTSS   S S  NA TA TK K ++KK+KNLFEVVQ
Sbjct: 4   VANRTAISRALDFSRLSSTFIRTFSTSSPSTSSSNPNASTASTKNK-RRKKKKNLFEVVQ 63

Query: 63  FLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGVHK 122
           FLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAWGIAHKDGTPIAEAPKKISGVHK
Sbjct: 64  FLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKDGTPIAEAPKKISGVHK 123

Query: 123 RCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           RCWKYI SLPR           SGE NP SAEVQTS
Sbjct: 124 RCWKYIASLPR-----------SGESNP-SAEVQTS 146

[Close]

BLAST of Sed0010324 vs. ExPASy TrEMBL
Match: A0A6J1KZ28 (uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.1e-57
Identity = 119/158 (75.32%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SL R+SENE TTM N GE NP SAEVQTS
Sbjct: 121 HKRCWKYIPSLSRSSENEPTTMTNLGESNP-SAEVQTS 156

[Close]

BLAST of Sed0010324 vs. ExPASy TrEMBL
Match: A0A6J1G714 (uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC111451448 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 117/158 (74.05%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEV 60
           M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           +QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAWGIAHK+G PIAEAPKKISGV
Sbjct: 61  IQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SLPR+ ENE TTM N GE NP SAEVQ+S
Sbjct: 121 HKRCWKYIPSLPRSLENEPTTMTNLGESNP-SAEVQSS 156

[Close]

BLAST of Sed0010324 vs. ExPASy TrEMBL
Match: A0A0A0KH76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.8e-52
Identity = 111/157 (70.70%), Postives = 128/157 (81.53%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVV 60
           M+VANRTAISR LD SR SS+F + FS+SS S S+SN + +PT ++ K +KK+KNLFEVV
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK+HWDEISYQITKINLYKSG HGKAWGIAHK+GTPI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120

Query: 121 KRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           KRCWKYI SLP + E++            +SAEVQTS
Sbjct: 121 KRCWKYIASLPHSGESK------------TSAEVQTS 145

[Close]

BLAST of Sed0010324 vs. ExPASy TrEMBL
Match: A0A6J1FVV3 (uncharacterized protein LOC111448948 OS=Cucurbita moschata OX=3662 GN=LOC111448948 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.4e-51
Identity = 116/158 (73.42%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSA--SNADTAPTKTKPKKKKRKNLFEV 60
           MSVANR+AIS  L  SR SS+F ++F+TSS SPS    NA TA TKTK ++KK+KNLFEV
Sbjct: 1   MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTK-RRKKKKNLFEV 60

Query: 61  VQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGV 120
           VQFLPNWGVGYHVAKAHWDEISYQITK+NLYKSG HGKAWG+AHKDGT IAEAPKKISGV
Sbjct: 61  VQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKISGV 120

Query: 121 HKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           HKRCWKYI SLPR           SG+ +P SAEVQTS
Sbjct: 121 HKRCWKYIASLPR-----------SGDSDP-SAEVQTS 145

[Close]

BLAST of Sed0010324 vs. ExPASy TrEMBL
Match: A0A5A7V0Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00360 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.8e-51
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVV 60
           M+VANRTAISR LD SR SS+F + F++SS S S+SN + +P+ ++ K +KK+KNLFEV+
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK+HWDEISYQITKINLYKSG HGKAWGIAHK+G PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS 156
           KRCWKYI SLPR  E++            +SAEVQTS
Sbjct: 121 KRCWKYIASLPRLGESK------------TSAEVQTS 145

[Close]

BLAST of Sed0010324 vs. TAIR 10
Match: AT5G58990.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-41
Identity = 83/141 (58.87%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MSVANRTAISRTLDLSRF--SSTFFKNFSTSSSPSASNADTAPT--KTKPKKKKRKNLFE 60
           M++ NR AISRT  +  F  S +  +NFS + S +++ A   P+    KPK++K+KNL E
Sbjct: 3   MTLMNR-AISRTETVGAFSLSLSLLRNFSAAPSAASTPASENPSSDSNKPKRRKKKNLIE 62

Query: 61  VVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISG 120
           V QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKAWGI HKDG   AEAPKKISG
Sbjct: 63  VAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISG 122

Query: 121 VHKRCWKYITSLPRASENEST 138
           VHKRCWKYI +L + +   +T
Sbjct: 123 VHKRCWKYIPNLSKTTPATTT 142

[Close]

BLAST of Sed0010324 vs. TAIR 10
Match: AT5G52370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 161.0 bits (406), Expect = 7.7e-40
Identity = 83/143 (58.04%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 1   MSVANRTAISR--TLDLSRFSSTFFKNFSTSSSPSASNADTAPTKTKPKKKKRKNLFEVV 60
           M++ NR AISR  T+   R S    +NFS + +    ++D+    +KPK++K+KNL EV 
Sbjct: 3   MTLINR-AISRTETVGAFRLSLNLLRNFSAAPASENPSSDS----SKPKRRKKKNLIEVA 62

Query: 61  QFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEAPKKISGVH 120
           QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKAWGI HKDG   AEAPKKISGVH
Sbjct: 63  QFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISGVH 122

Query: 121 KRCWKYITSLPRASENESTTMAN 142
           KRCWKYI +L + +   +TT A+
Sbjct: 123 KRCWKYIPNLSKTA--PATTSAH 138

The following BLAST results are available for this feature:

BLAST of Sed0010324 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532313.1	1.9e-56	74.68	uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]	[more]
XP_023007567.1	1.9e-56	75.32	uncharacterized protein LOC111500023 [Cucurbita maxima]	[more]
XP_022947647.1	9.4e-56	74.05	uncharacterized protein LOC111451448 [Cucurbita moschata]	[more]
KAG6605433.1	7.9e-55	73.42	hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900676.1	1.8e-54	77.56	uncharacterized protein LOC120087826 [Benincasa hispida]	[more]

BLAST of Sed0010324 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZ28	9.1e-57	75.32	uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023...	[more]
A0A6J1G714	4.5e-56	74.05	uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A0A0KH76	6.8e-52	70.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1	[more]
A0A6J1FVV3	4.4e-51	73.42	uncharacterized protein LOC111448948 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A5A7V0Y6	9.8e-51	68.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0010324 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58990.1	9.1e-41	58.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G52370.1	7.7e-40	58.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032053	Mitochondrial 28S ribosomal protein S34	PFAM	PF16053	MRP-S34	coord: 51..127 e-value: 9.7E-12 score: 44.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	PANTHER	PTHR35316:SF1	28S RIBOSOMAL S34 PROTEIN	coord: 4..142
None	No IPR available	PANTHER	PTHR35316	28S RIBOSOMAL S34 PROTEIN	coord: 4..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010324.1	Sed0010324.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome