Sed0002953 (gene) Chayote v1

Overview
NameSed0002953
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 1306880 .. 1307095 (+)
RNA-Seq ExpressionSed0002953
SyntenySed0002953
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATCCTCCCTGCCGCCGGCGGTGGCTTCGGAGATTTCACGGCGGTGACCTCCGACGGGCTATTTTTTATCATTTCTGCCATCCTTGTTTCCATCTCTCTCATATCATTCATCCTATTTGCTTGCGCCGACGACCCTCGAAAGAAAACCGATGGCGGCGGTTGTGGCGGCGGTAGTGGTTGTGGTGGCGGTGGAGGTGGAGAGTGA

mRNA sequence

ATGGGAAGGCCAATCCTCCCTGCCGCCGGCGGTGGCTTCGGAGATTTCACGGCGGTGACCTCCGACGGGCTATTTTTTATCATTTCTGCCATCCTTGTTTCCATCTCTCTCATATCATTCATCCTATTTGCTTGCGCCGACGACCCTCGAAAGAAAACCGATGGCGGCGGTTGTGGCGGCGGTAGTGGTTGTGGTGGCGGTGGAGGTGGAGAGTGA

Coding sequence (CDS)

ATGGGAAGGCCAATCCTCCCTGCCGCCGGCGGTGGCTTCGGAGATTTCACGGCGGTGACCTCCGACGGGCTATTTTTTATCATTTCTGCCATCCTTGTTTCCATCTCTCTCATATCATTCATCCTATTTGCTTGCGCCGACGACCCTCGAAAGAAAACCGATGGCGGCGGTTGTGGCGGCGGTAGTGGTTGTGGTGGCGGTGGAGGTGGAGAGTGA

Protein sequence

MGRPILPAAGGGFGDFTAVTSDGLFFIISAILVSISLISFILFACADDPRKKTDGGGCGGGSGCGGGGGGE
Homology
BLAST of Sed0002953 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MGRPILPAA--GGGFGDFTAVTSDGLFFIISAILVSISLISFILFAC--ADDPRKKTDGG 60
          MGRPIL AA  GGGF D T V+S GL F++SAIL+SISL+S I+FAC  ++DP++K  GG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGL-FLLSAILLSISLVSMIIFACGNSNDPKRKDGGG 60

Query: 61 GCGGGSGCGGGGGG 71
          GCGGG G GGGG G
Sbjct: 61 GCGGGDGGGGGGCG 73

BLAST of Sed0002953 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 1  MGRPILPAAGGGFGDFTAVTSDGLFFIISAILVSISLISFILFACADDPRK---KTDGGG 60
          MGRPI  A GGG GD T  +S GL  +++ IL+S+SL+S I+FAC D  RK   K +GGG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGL-LLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGG 60

Query: 61 CG---GGSGCGGGGG 70
           G   GG GCGGGGG
Sbjct: 61 GGAGCGGGGCGGGGG 74

BLAST of Sed0002953 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 1  MGRPILPAAGGGFGDFTAVTSDGLFFIISAILVSISLISFILFACAD---DPRKKTDGGG 60
          MGR I  A GGG GD T  +S GL  +++ +L+S+SL+S I+FAC D   D ++K +GGG
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGL-LLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGG 60

Query: 61 C------------GGGSGCGGGGGG 71
          C            GGG GCGGGGGG
Sbjct: 61 CGGGGGGGCGGDVGGGGGCGGGGGG 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6604774.11.0e-0964.86hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.11.4e-0656.00hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.16.9e-0648.24hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002953.1Sed0002953.1mRNA