Sed0000430 (gene) Chayote v1

Overview


Name	Sed0000430
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	LG09: 5981495 .. 5987553 (-)
RNA-Seq Expression	Sed0000430
Synteny	Sed0000430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCGTTAATCCGTTTGATTTGTTGGGCGATGACGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGCCGCCGCCGCCGAAGAAAGGTCCTGCGCAGACCAAACCGGCGCCGGTGGGGGCTCAGCCGAACAAGCCTGCCAGTCTTCCTTCTAAGCCTCTCCCACCTGCGCAGGCTGGTGAGATTCTCTTGTTTCTAAATTTCTGGTTTGATTTTGTATATGAATCCTTTTTTACCGCTTTTGGTTGATTGATTTGACGTTTTTTCTGACATTTTTCTCTTGAACTACGCGAGAGTGAAGGATGGTAACTGTTTTTAATTTGGTGAAGTATTAAGTTTTTTTTTTTTTTTTTTCCTTTTTTCAGCAGAAAGAGTTGTGGGATGTAAAGGACTTGGGTTATATTGGTTATTGGAGTTCAAGTTTGCCTTTTTGAAATTCAGATAATACCAGACAATTTGTTTGTTTGCTTTGATATTATGGTCGGAACTTATTGAAGAGAGAACACTACTTTCTTTTTCTTGGGAAGAAATCTGATTTCTGCAATGCTGTTGTGATTGAATTGCGTTGATTCTTTTTAAATGTTTCAAGATTTTGAAATGAATTTTGGTATTCTTATTATGATACATTGTTTTTTTTCCATCGTGATTGTAAATTATTAAGTTTGATGTTATTGTTTTCGAGTTAAACGTCTTCTAATTGAACTTGTGATTGGTTATTGATTTGGACTCTTTTGCGAGGACATTCTTATGTAAGTCTTTATTTTTTCTTGTTTGGTTTGATTAAAATGTATCATATCTCTATTTATCAACTTATGAGTTTCCATTGGTATGAATTAAACATTGTGTGATTGAGATAACATTTTCTTATTATGAGTAGTAAGAGAAGCAAGGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGGCGTGGTTATGGCCGAGGCCGTGAAGGTGGCAGCTTCTATCGTGACTCTTTCAATAATGAGAGTGCACCTGTAGATGGAGAAGCAGGAAAGTTAACTGAAAGGCGTGAATTTTCTGGGCCTCGCGGTCGTGGTGGCCGTCGTGGCGGTTTCAATAATGGAGAGGGTACTGATGGGGAGCGCCCTCGCAGAGTATATGAGCGTCATAGTGGAACTGGCCGTGAGTAAGTGTCTATTCTCTTATAATTAATTTTCCATATTCTTGCTGTATATTCTACACTTTTTTTATGCTTTCATCCTACTTTTGTGCCTAGAAATGAATTTAAACGCGAAGGATCTGGACGCGGTAATTGGGGAAGGCCAACTGACGAATTTGCTGAGTAAGTATGATGCCTTTTTCTGGTGTGTGTGCATGATGAATCTTCTTTTCAAGCCTTCCTCATCGAAACCGCCAGGTTGGCTAGAAAAACATAATTATACTCATGAATGCCTTTCTCGATATGAGAAAGCTGCACTCAACACTCATCTCCCAATCTATATGGAGATCTTGGGTCAAGCCTCTTCTTTTTTGTATGCTAATAAGGTTAATTTTCCCTCCTTGACAATTAGTTTTACCTTAAAATTACTGTGTTAATAGGGTAACAGAGGAAGTTGTTAATGAGAGGGAAAAGAGTGCAGGTGATGAGAAGCCTGTTCAAGAGGGTGATGCTGGAGCTGTCAATACTGAGAACTTTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGTTGGAACTTTTAGCTTTTGGAGTATTTCCCTTCAATTTGGCCCTCCTACTTCATTTTTCCTTTATTTTTTGTGATTGAAAAGCAACTTGTAGTGTTGAAAAGGCTTTATTACTTTACATTTAGTATAATCAGTTGGATACATGTAAGAGTTGTAAATCAGCTTGGTGGGGATGGATTTTGATCTCCATTGTATCGTTTCACTTGATTATGAATTTAATTTACCTTCTTTTTCATAATTCAGGAAATGACCCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCCCTTCTGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAAATTTCAAGCAAGAAGGAGAACAACGAAATCTTTGCTAAATTGGTACACCTACTTGGCCCTTTTTCAGAATTAGTTATGTATCGATCTAATGACCCTTGCCATTTCATCTTCATTTATTATTCCAATTGTAGGGGTCTGAGAAGGATAAGCGAAAAGAAATTGCAGAAAAGGATGAGAGAACTAAGAAGGTATTTGTTACTTCTTAATCTCATCCTCAAAATGGAAAATCGAAATTTTGCCTTGCCTCTAAAGATGGAAGAACAACTTGACTCTAGAACCTACCAGCATCTGTTTTCTTCCAAGATTGTTTAGATGAATTAAAGAATAAACAAATAAAAAGAGAAAAAATATAAATGAAAAGTAAACAAGGAGAGGAAATCGAAGGAAAAAGAGAGGGAGAGCACTTTTTCCTTCTCCCAATGATGAAAAAATTATTAATGTTTCTTTTAGTGTGCCCTTTTTTACTTTCCTCGACATGATGCATGAAGTAGTGAGATTTTCATTAATTTAACCTACCAAGAGTAGTGAGATTTTTATTAATTTAGCCTGCTAGTAGGTCTCTGAAACCTACAAATTTGCAAAATCTCTTGTTGTCTTCCAAGTTCATGCCTTGTCATGGACACGGGTGCCCCTAGTTTTAGAAGGGTGAAGCTCCAATTCTTCAGTTTTAACTAGAGATGTTCGCGGGGCGGGGCCGGAGAATGACTTCCCCATTCCCGTGGGATTCCCCGGCGGGGATTGGGTCCCTGCAGGGATTTTTTCAAAAATTTTTTTTTTACATTTTTATATATTTTTAGGATAATACTCTTAAGTAATTAGATTTTCTTAGAAAATATTTATAAATTTCAACTATAATATTAATTATTAAAGAAAAATACTCATATGCATAGGTAATTTCATATCAACAAATATATTTTTATTTGAAAATAAAAGGGGTAAAGTATAGAAAAATATATGTAAAAAAAAAGTAATCGGGGTAGGGATCGGAGAATCGGGGATGGGGAATACATTCCCCGTCCCCGTTCCCTGCCTCAATAGGGGCGGTTCCTCGCGGGGAAAATGGACATCTCTAATTTTAACATGAGAATATTGTTTGTCCATGCAACAAATAATTTGTCTTTTCAGCACGCATCCCATTCCCCCATTAAACACAAACCCCATCATGACACCACGCAAAAAGTACGATAAGGTCCGATTTCGAATTAAAGTACAAGATAACCCAAGTTTTAACCGGACATGGAACTTTCCTCCCCGATGGGTGGTGTGGTGGTCAAAAGCTTAGCTTTTGAAGGTGTTCTCCCCTCAAGGTCCCCAGTTGGAGACTCACTTGTGACATTAATTTGTAGGCACCTCCCATGTCTCTATTGCTTTGATGTCTTTTGGTTCCTAGCCTAAGGACATGAATGGTTACCTCAGGTATAGTGGAGCGAAGCTCCAATTTCTGACTTTCCAAAAAAAAGAAAACTGGACTTGGAAGTTCTCTTGAGAATCTCTCTCAAGCCCTAATATCTGAAGGGCCAAAATATTTGATACCTTTCGCTATACACAACTTCTCTACTTATAATAAATGTCTAACATAATTCCTTAGATTTTTGCTAAAATGCCCCTAATGTAAACCCTACCATTATCAGCCTCTAAAACACACCTTGTCCTCAAAAGCAAACAACCGAAAGTTAAATGCAAGGTTTTAATAAAGAAAAATAGTCAACAAAAAAAAGGAAAAAATAGCAACCTAACAACCTCATATTGCCCAAAAATAAAAAATACTATGATTTTTTTTAAGCATAGGCGAACATACATTTCCATGCTTCTTGTTGGGTTCTTCTCTTCTCTTTGCTTCTCCAAACACGCAGTTTGCCTTGTCTCCTAGCGTAGTGGTTGGGCACATGGGCCTTGGGGGTGTGCTACCCTCTAGGTCTTAGATTCAAGGCTTGGTGAGAATTAATTCACCAAGCCACCTCCAATTTCACTTTCGATCGTATAATGTATCTTGGTGCTACAGTCTAAGGATGTGCTAATGGTGCCTCTAGGTTTAGAAGAGCAAAGCTTTCAAGTTTTCGGTCATCAAAAATTTAAAAAAAAAAACAAAACAAAACAAAAACAAGCAGTTTCCTTCACCTCTTCTTCATTTTTCTTTCGTCATTTTCTTCTTCGCATTTGTTGTCTCTTCGGTCTTTGACTTTTGACGAGTTTTGGATGGGATCTCATTGCTGCCTAGCAGTCTTCATAGGTAAGTTTCAGCGATTCTTCCATCAGTCTATTTTCTCTCTTCTTTTTGTTACCGGCAGTTGCTATTGTCGTAGATGTTTTCCTTTTAATATTTATCTGGCAACGACGTCTTTTTTGTATGCATTCTCTCTCTCTCTCTCTCTTGTGCTTGTTTGGCCTCATTCCTTTTTCATGCCTACTCTTTTTCTTCATATATTGGGATCAATCTCTGGATGGATGAGAACTTATCCTTGGCTTTCTTATTTGCTCGGATATTCTGAAATAGCTCTTCAATGTCATACCAAATTTTATTTTATCTGTTTCTTTCAACACTTTTATGATTTCCACCTTTGATTCATCAACTTCAACGATCTTGATCTTCTCCTCTATTTGTTTTGCCAAACTATCTTCTCTTGAATCTATTTTCTGTTTAGAAGGATCATTCTTGACTTTTTTTCGTTCTTCCTCTTCCCTCCTCTTCTTTGGCCATTTTTCTTGATTCCTCTTTCCATAATCGATCAATGCCATCATATGTAAATCAATTACATCCATGGTCATAATTGATATCGCTTTGATACCAATTGATAGAATCCAAAAGAACATGAAACTATATTTCGATATAATGAAAGGAAAATAAAAAATAACCAAACTTTGGAAGAACCTGAACCTCCCCATCTTGAGAAATGAGAACTACTCTCAAGCCCTAAATCATTCTCATACATTTGATATCTATGAGTGCCTGAGCCAACTTACGCGCACTTCGACTATCTTTATGGGATACACCGCCCAACTCTATAACACTTCGATGTCAAGGAAATTTGTAAGAAATTATTTCCTAGGTAAGTGGCTGCAATGGGTTGAATCTATTACCTCTAGAATCCCTACGGCTCTCTTTAACCACCACTAGCCCAACCCATTGAACCCTAAACCCAATGCTTACACTTTCGGGACTTAAAGTTGCATACCATTTTGGTCCATGTATTTTGGGGGTTATTTCATTTTGGTTCTTCCAATGTCCAATTTTAGTACATTAATATTAACTATTAAGCTTTTCAAGGAAATGGGATAACTTCAAATTGCAATCAAATCATTCTTGGTTTTTAAAAAATGGATTTAGTATTTACTGTTAGTCAAACATTGTCTACCTCCTTCATAATTAATTTCCTACAAAGTATCTTGACCACCAAATGCAGTAAGGTCAGAGAGTTGTCCTTCAGAATAGTTGAAGGAGAATAGTTGAACTGTGTGTAAGATGGTTTGGACACTTGCATATATAATTTAGAACTATTTATACTGGAGAGTGAGTTTAGTCCAAATGCATTTTGCTCATATCTATAGTACTTCTACTTGGGCCCATTAGAGTGGAGGTGATTTATTTTGCTCGCCCTTGAACATTCTTTTGGTCGTTTACTTCAGTGAATCTGCATGAAAAACACCAAATCCTGATCCTCCCTTCGAACTTTATAACTTTTTTGCTGTACTGGGGTGTTATTCTATCTTAATTGTCCATTTGAATTGCTTGGTTGTCTCCAAAATATCAAAATTGACCTCGTAGAAGGCTAAATTACTGACATTTCATTTGTTTTGGCATTTGTAGTCTTTGAGTATCAATGAGTTCTTGAAGCCCGTGGAAGGGGAGAGACACTACGCACCAGGTGGTCGAGGAAGGGGCCGTGGTCGTGGTTCAAGGGGAGGTTACAGTGGCATCTCGACAAGCAATGTTGCAGCCCCGTCCATCGAGGATCCTGGTCAGTTCCCAACCTTAGGTGCTAAGTGA

mRNA sequence

ATGTCGACCGTTAATCCGTTTGATTTGTTGGGCGATGACGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGCCGCCGCCGCCGAAGAAAGGTCCTGCGCAGACCAAACCGGCGCCGGTGGGGGCTCAGCCGAACAAGCCTGCCAGTCTTCCTTCTAAGCCTCTCCCACCTGCGCAGGCTGTAAGAGAAGCAAGGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGGCGTGGTTATGGCCGAGGCCGTGAAGGTGGCAGCTTCTATCGTGACTCTTTCAATAATGAGAGTGCACCTGTAGATGGAGAAGCAGGAAAGTTAACTGAAAGGCGTGAATTTTCTGGGCCTCGCGGTCGTGGTGGCCGTCGTGGCGGTTTCAATAATGGAGAGGGTACTGATGGGGAGCGCCCTCGCAGAGTATATGAGCGTCATAGTGGAACTGGCCGTGAAAATGAATTTAAACGCGAAGGATCTGGACGCGGTAATTGGGGAAGGCCAACTGACGAATTTGCTGAGGTAACAGAGGAAGTTGTTAATGAGAGGGAAAAGAGTGCAGGTGATGAGAAGCCTGTTCAAGAGGGTGATGCTGGAGCTGTCAATACTGAGAACTTTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACCCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCCCTTCTGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAAATTTCAAGCAAGAAGGAGAACAACGAAATCTTTGCTAAATTGGGGTCTGAGAAGGATAAGCGAAAAGAAATTGCAGAAAAGGATGAGAGAACTAAGAAGTCTTTGAGTATCAATGAGTTCTTGAAGCCCGTGGAAGGGGAGAGACACTACGCACCAGGTGGTCGAGGAAGGGGCCGTGGTCGTGGTTCAAGGGGAGGTTACAGTGGCATCTCGACAAGCAATGTTGCAGCCCCGTCCATCGAGGATCCTGGTCAGTTCCCAACCTTAGGTGCTAAGTGA

Coding sequence (CDS)

ATGTCGACCGTTAATCCGTTTGATTTGTTGGGCGATGACGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGCCGCCGCCGCCGAAGAAAGGTCCTGCGCAGACCAAACCGGCGCCGGTGGGGGCTCAGCCGAACAAGCCTGCCAGTCTTCCTTCTAAGCCTCTCCCACCTGCGCAGGCTGTAAGAGAAGCAAGGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGGCGTGGTTATGGCCGAGGCCGTGAAGGTGGCAGCTTCTATCGTGACTCTTTCAATAATGAGAGTGCACCTGTAGATGGAGAAGCAGGAAAGTTAACTGAAAGGCGTGAATTTTCTGGGCCTCGCGGTCGTGGTGGCCGTCGTGGCGGTTTCAATAATGGAGAGGGTACTGATGGGGAGCGCCCTCGCAGAGTATATGAGCGTCATAGTGGAACTGGCCGTGAAAATGAATTTAAACGCGAAGGATCTGGACGCGGTAATTGGGGAAGGCCAACTGACGAATTTGCTGAGGTAACAGAGGAAGTTGTTAATGAGAGGGAAAAGAGTGCAGGTGATGAGAAGCCTGTTCAAGAGGGTGATGCTGGAGCTGTCAATACTGAGAACTTTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACCCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCCCTTCTGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAAATTTCAAGCAAGAAGGAGAACAACGAAATCTTTGCTAAATTGGGGTCTGAGAAGGATAAGCGAAAAGAAATTGCAGAAAAGGATGAGAGAACTAAGAAGTCTTTGAGTATCAATGAGTTCTTGAAGCCCGTGGAAGGGGAGAGACACTACGCACCAGGTGGTCGAGGAAGGGGCCGTGGTCGTGGTTCAAGGGGAGGTTACAGTGGCATCTCGACAAGCAATGTTGCAGCCCCGTCCATCGAGGATCCTGGTCAGTTCCCAACCTTAGGTGCTAAGTGA

Protein sequence

MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLPPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNESAPVDGEAGKLTERREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTSNVAAPSIEDPGQFPTLGAK

Homology

[Close]

BLAST of Sed0000430 vs. NCBI nr
Match: XP_023514394.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 548.5 bits (1412), Expect = 4.2e-152
Identity = 308/361 (85.32%), Postives = 319/361 (88.37%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKK-VAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPL 60
           M+TVNPFDLLGDDDAEDPSQLIAAKK VA PPPKKGPAQTKPA +GAQ NK ASLPSKPL
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPPKKGPAQTKPAALGAQQNKAASLPSKPL 60

Query: 61  PPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTE 120
           PPAQAVREARNE  RGGRGSGRGGGRGYGRGREG  F R SFNNE  SA  DGE GK TE
Sbjct: 61  PPAQAVREARNESSRGGRGSGRGGGRGYGRGREGAGFNRGSFNNESSSAAEDGETGKTTE 120

Query: 121 RREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDE 180
           RR ++GPRGRGGRRGGFNNGE TDGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+E
Sbjct: 121 RRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEE 180

Query: 181 FAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEE 240
           FAE  EE VNE EK+ GDEKP+QE D G VN EN AKEPEETEPEDKEMTLEEYEKLLEE
Sbjct: 181 FAEAAEEAVNETEKNMGDEKPLQEDDTGGVNPENSAKEPEETEPEDKEMTLEEYEKLLEE 240

Query: 241 KRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSL 300
           KRKALL LKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIAEK+ERTKKSL
Sbjct: 241 KRKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEERTKKSL 300

Query: 301 SINEFLKPVEGERHYAPGGRGRGRGRGSR----GGYSGISTSNVAAPSIEDPGQFPTLGA 355
           SINEFLKP EGERHYAPGGRGRGRGRGSR    GGYSG ST NVA PSIEDPGQFPTLGA
Sbjct: 301 SINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGGYSGNSTINVATPSIEDPGQFPTLGA 360

[Close]

BLAST of Sed0000430 vs. NCBI nr
Match: XP_022959731.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 547.0 bits (1408), Expect = 1.2e-151
Identity = 306/359 (85.24%), Postives = 316/359 (88.02%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKV   PPKKGPAQTKPA +GAQ NK ASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTER 120
           PAQAVREARNE  RGGRGSGRGGGRGYGRGREG  F R SFNNE  SA  DGE GK TER
Sbjct: 61  PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 121 REFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEF 180
           R ++GPRGRGGRRG FNNGE TDGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+EF
Sbjct: 121 RGYAGPRGRGGRRGDFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 181 AEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEK 240
           AE  EE VNE EK+ GDEKPVQE DAG VN EN AKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 241 RKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLS 300
           RKALL LKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIAEK+ERTKK LS
Sbjct: 241 RKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEERTKKFLS 300

Query: 301 INEFLKPVEGERHYAPGGRGRGRGRGSR---GGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           INEFLKP EGERHYAPGGRGRGRGRGSR   GGYSG ST NVA PSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. NCBI nr
Match: XP_022959730.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 544.7 bits (1402), Expect = 6.1e-151
Identity = 307/360 (85.28%), Postives = 317/360 (88.06%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVA---PPPPKKGPAQTKPAPVGAQPNKPASLPSK 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKVA    P PKKGPAQ KPA +GAQ NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKL 120
           PLPPAQAVREARNEGGRGGRGSGRG GRGYGRGREG  F R SFNNE  SA  DGE GK 
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPT 180
           TERR + GPRGRGGRRGGFNNGE  DGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 DEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLL 240
           +EFAE  EE VNE EK+ GDEKPVQE DAG VN EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKK 300
           EEKRKALLALKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIA+K+ERTKK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPVEGERHYAPGGRGRGR-GRGSRGGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           SLSINEFLKP EGERHY  GGRGRGR GRGSRGGYSG S SNV APSIEDPGQFPTLGAK
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAK 360

[Close]

BLAST of Sed0000430 vs. NCBI nr
Match: KAG7025351.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 544.3 bits (1401), Expect = 7.9e-151
Identity = 304/359 (84.68%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKV   PPKKGP QTKPA +GAQ NK ASLPSKPLP
Sbjct: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTER 120
           PAQAVREARNE  RGGRGSGRGGGRGYGRGREG  F R SFNNE  SA  DGE GK TER
Sbjct: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 482

Query: 121 REFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEF 180
           R ++GPRGRGGRRGGFNNGE TDGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+EF
Sbjct: 483 RGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 542

Query: 181 AEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEK 240
           AE  EE VNE EK+ GDEKPVQE D G VN EN AKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 543 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 602

Query: 241 RKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLS 300
           RKALL LKTE RKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIAEK++RTKKSLS
Sbjct: 603 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 662

Query: 301 INEFLKPVEGERHYAPGGRGRGRGRGSR---GGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           INEFLKP EGERHYAPGGRGRGRGRGSR   GGYSG ST NVA PSIEDPGQFPTLGAK
Sbjct: 663 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 721

[Close]

BLAST of Sed0000430 vs. NCBI nr
Match: KAG6592943.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 543.9 bits (1400), Expect = 1.0e-150
Identity = 304/359 (84.68%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKV   PPKKGPAQTKPA +GAQ NK ASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTER 120
           PAQAVREARNE  RGGRGSGRGGGRGYGRGREG  F R SFNNE  SA  DGE GK TER
Sbjct: 61  PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 121 REFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEF 180
           R ++GPRGRGGRRGGFNNGE  DGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+EF
Sbjct: 121 RGYAGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 181 AEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEK 240
           AE  EE VNE EK+ GDEKPVQE D G VN EN AKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 241 RKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLS 300
           RKALL LKTE RKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIAEK++RTKKSLS
Sbjct: 241 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 300

Query: 301 INEFLKPVEGERHYAPGGRGRGRGRGSR---GGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           INEFLKP EGERHYAPGGRGRGRGRGSR   GGYSG ST NVA PSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.7e-71
Identity = 199/375 (53.07%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+T+NPFDLL DDDAEDPSQL  A +      K G   + PA           LPSKPLP
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSGQVSSLPA------KSAPKLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNN------ESAPVDGEAGK 120
           PAQAVREAR++  RGG G G     G+ RGR  G + RD  NN           +G+  K
Sbjct: 61  PAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSK 120

Query: 121 LTERREFSG--PRGR---------GGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKR 180
            +  R   G  PRG          GGRRGGF+N EG DGERPRR +ER SGTGR ++FKR
Sbjct: 121 SSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKR 180

Query: 181 EGSGRGNWGRPTDEFAEVTEEVVN-EREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPE 240
           +GSGRGNWG P +E A  TE V   E EK  G EKP  +  A   N E+     EE EPE
Sbjct: 181 DGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPE 240

Query: 241 DKEMTLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDK 300
           DKEMTL+EYEK+LEEK+KAL +L T ERKVD K F SMQQ+S+KK N+EIF KLGS+KDK
Sbjct: 241 DKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDK 300

Query: 301 RKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTS---NVAA 355
           RK+  +K+E+ KK++SINEFLKP EG  +Y  G  GRGRG   RGG S   +    N AA
Sbjct: 301 RKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAA 355

[Close]

BLAST of Sed0000430 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.7e-66
Identity = 177/302 (58.61%), Postives = 211/302 (69.87%), Query Frame = 0


Query: 75  GGRGSGRGGGRGYGRGREGGSFYRDSFNNESA-------------PVDGEAGKLTERR-E 134
           GGRG  RGGGRG G GR G  F ++S ++E+A               DGE+GKL+ERR  
Sbjct: 3   GGRGGPRGGGRGRGPGR-GRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGG 62

Query: 135 FSGPRG--RGGRRGGFNNGEGT--DGERPRRVYERHSGTGRENEF-KREGSGRGNWGRPT 194
           + GPRG   GGRRGGFNNG+    +GERPRRV++R SGTGR NE+ KREGSGRGNWG P 
Sbjct: 63  YGGPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPA 122

Query: 195 DEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLL 254
           D+ A+ TE  VN+ EK    EK   + +A   N ++ A EPEE EPE+KEMTLEEYEKL+
Sbjct: 123 DDIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLM 182

Query: 255 EEKRKALLALKTEERKVD-PKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTK 314
           EEKRKALLALK EERKV+  KE  SMQ +S+KK ++EIF KLGSEK+KRKE  EK    +
Sbjct: 183 EEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAVEK---AR 242

Query: 315 KSLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTSN--VAAPSIEDPGQFPTLG 355
           K+ SINEFLKP EGE +   GGRGRG GRG RGG+ G    N   +APSIED GQFP+L 
Sbjct: 243 KTQSINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGGNKSFSAPSIEDVGQFPSLV 299

[Close]

BLAST of Sed0000430 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-62
Identity = 189/380 (49.74%), Postives = 231/380 (60.79%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M++VNPFDLL DDDAEDPSQ++A+K    P     P QT          K   +P+KP P
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK----PLKVVAPVQTA---------KSGKMPTKPPP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNES-APVDGEAGKLTERR 120
           P+QAVREARN  G GGRG+GRGG   YGRG  GG+  RDS NN+  A  +G  G      
Sbjct: 61  PSQAVREARNAPG-GGRGAGRGG--SYGRGGRGGN-NRDSRNNDGPANENGYGGGYRRSE 120

Query: 121 EFSGPRG-------RGGRRGGFNN-GEGTDGERPRRVYERHSGTGRENEFKREGSGRGNW 180
           E  G R        RG RRG ++N G+  D ERPR+ Y+RHS T   NE KR+G+GR NW
Sbjct: 121 EGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANW 180

Query: 181 GRPTDEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEY 240
           G   D+   VTEE     +K+   EK   EG+A     E  A++ EE +PEDKEMTLEEY
Sbjct: 181 GTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEMTLEEY 240

Query: 241 EKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENN-EIFAKLGSEKDKRKEIAEKD 300
           EK+LEEK+KAL A K EERKVD K F +MQQ+SSKK NN E+F KLG+EKDKR  I E++
Sbjct: 241 EKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITERE 300

Query: 301 ERTKKSLSINEFLKPVEGERHYAP-----GGR-------------GRGRGRGSRGGYSGI 353
           E+T+KSLSINEFLKP +G+ +Y P     GGR             GR    G R    G 
Sbjct: 301 EKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGG 359

[Close]

BLAST of Sed0000430 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.3e-59
Identity = 182/375 (48.53%), Postives = 221/375 (58.93%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+++NPFDLLG DDAEDPSQL  A             + + A    QP K A  P+KP P
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS----------QKVEKAAAAVQPPKAAKFPTKPAP 60

Query: 61  PAQAVREARN--EGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNES-APVDGEAGKLTE 120
           P+QAVRE+RN  +GGRGG G GRG   G+ RGR  G + RD+ NN++    +G +G    
Sbjct: 61  PSQAVRESRNAPQGGRGGTG-GRG---GFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRR 120

Query: 121 RREFSGPRGRGG--------------RRGGFNNGEGTDGERPRRVYERHSGTGRENEFKR 180
             E +    RGG              RRGG  NGE  D ERP R Y+RHS TG     KR
Sbjct: 121 PSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKR 180

Query: 181 EGSGRGNWGRPTDEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPED 240
            G GRGNWG   D+    +EE   E EKS   EK   E +      E  A+E  + E E+
Sbjct: 181 NGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEE 240

Query: 241 ---KEMTLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKE-NNEIFAKLGSE 300
              +EMTLEEYEK+LEEK+KAL A K EERKVD K F SMQQ+S+KK  + EIF KLGS+
Sbjct: 241 AEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSD 300

Query: 301 KDKRKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGR-GRGSRG-GYSGISTSNV 353
           K+KRK+  EK    KKSLSINEFLKP +G+R+   GG  RGR GRG RG G +       
Sbjct: 301 KEKRKDATEK---AKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEA 357

[Close]

BLAST of Sed0000430 vs. ExPASy TrEMBL
Match: A0A6J1H5P3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111460714 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 5.9e-152
Identity = 306/359 (85.24%), Postives = 316/359 (88.02%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKV   PPKKGPAQTKPA +GAQ NK ASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTER 120
           PAQAVREARNE  RGGRGSGRGGGRGYGRGREG  F R SFNNE  SA  DGE GK TER
Sbjct: 61  PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 121 REFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEF 180
           R ++GPRGRGGRRG FNNGE TDGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+EF
Sbjct: 121 RGYAGPRGRGGRRGDFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 181 AEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEK 240
           AE  EE VNE EK+ GDEKPVQE DAG VN EN AKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 241 RKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLS 300
           RKALL LKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIAEK+ERTKK LS
Sbjct: 241 RKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEERTKKFLS 300

Query: 301 INEFLKPVEGERHYAPGGRGRGRGRGSR---GGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           INEFLKP EGERHYAPGGRGRGRGRGSR   GGYSG ST NVA PSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. ExPASy TrEMBL
Match: A0A6J1H755 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111460713 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.9e-151
Identity = 307/360 (85.28%), Postives = 317/360 (88.06%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVA---PPPPKKGPAQTKPAPVGAQPNKPASLPSK 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKVA    P PKKGPAQ KPA +GAQ NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKL 120
           PLPPAQAVREARNEGGRGGRGSGRG GRGYGRGREG  F R SFNNE  SA  DGE GK 
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPT 180
           TERR + GPRGRGGRRGGFNNGE  DGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 DEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLL 240
           +EFAE  EE VNE EK+ GDEKPVQE DAG VN EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKK 300
           EEKRKALLALKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIA+K+ERTKK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPVEGERHYAPGGRGRGR-GRGSRGGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           SLSINEFLKP EGERHY  GGRGRGR GRGSRGGYSG S SNV APSIEDPGQFPTLGAK
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAK 360

[Close]

BLAST of Sed0000430 vs. ExPASy TrEMBL
Match: A0A6J1KTS3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111497567 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 8.5e-151
Identity = 304/359 (84.68%), Postives = 316/359 (88.02%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKV   PPKKGPAQTKPA +GAQ NK ASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKLTER 120
           PAQAVREARNE  RGGRGSGR GGRGYGRGREG  F R SFNNE  SA  DGE GK TER
Sbjct: 61  PAQAVREARNESSRGGRGSGRVGGRGYGRGREGAGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 121 REFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEF 180
           R ++GPRGRGGRRGGFNNGE TDGERPRRV+ERHSGTG  NEFKREGSGRGNWGRPT+EF
Sbjct: 121 RAYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 181 AEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEK 240
           AE  EE VNE EK+ GDEKPVQE DAG VN EN AKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNETEKNIGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 241 RKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLS 300
           RKALL LKTEERKVDPKEFASMQQ+S KKENN+IF KLG+EKDKRKEIA+K+ERTKKSLS
Sbjct: 241 RKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGTEKDKRKEIADKEERTKKSLS 300

Query: 301 INEFLKPVEGERHYAPGGRGRGRGRGSR---GGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           INEFLKP EGERHYAPGGRGRGRGRGSR   GGYSG ST  VA PSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTIIVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 7.2e-150
Identity = 301/359 (83.84%), Postives = 318/359 (88.58%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVA---PPPPKKGPAQTKPAPVGAQPNKPASLPSK 60
           M+TVNPFDLLGDDDAEDPSQLIAAK+VA    PPPKKG AQTKP    +Q NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKL 120
           PLPP+QAVREARNEG RGGRGSGRGGGRGYGRGREGG F RD  N+E  SAP DGEAGK 
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPT 180
           TERR + GPRGRGGRRGGFNNGE  DGERPRRV+ERHSGTGR NE KREG+GRGNWGRP 
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNENKREGAGRGNWGRPA 180

Query: 181 DEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLL 240
           DEFAEV EE VNE EK+ GDEKPVQE D   VN+EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKK 300
           E+KRKAL+ALKTEERKVDPKEFASMQQ+SSKKENN+IF KLGSEKDKRKEIA+K+ERTKK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           SLSINEFL+P EGERHY PGGRGRGRGRGSRGGY G S SNVAAPSIEDPGQFPTLGAK
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNVAAPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. ExPASy TrEMBL
Match: A0A6J1KVE4 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111497566 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 2.1e-149
Identity = 301/359 (83.84%), Postives = 316/359 (88.02%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVA---PPPPKKGPAQTKPAPVGAQPNKPASLPSK 60
           M+TVNPFDLLGDDDAEDPSQLIAAKKVA    P PKKGPAQ KPA +GAQ NKPA+LPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAMTSPAPKKGPAQNKPAALGAQQNKPANLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNE--SAPVDGEAGKL 120
           PLPPAQAVREARNE GRGGRGSGRG GRGYGRGREG  F R SFNNE  SA  DGE GK 
Sbjct: 61  PLPPAQAVREARNESGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERREFSGPRGRGGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPT 180
           TERR ++GPRGRGGRRGGFNNGE  DGERPRRV+ERHSGTG  NEFKREGSGRGNWGRP+
Sbjct: 121 TERRGYAGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPS 180

Query: 181 DEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLL 240
           +EF+E  EE VNE EK+ GDEKPVQE +A  VNTEN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFSETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKK 300
           EEKRKALLALKTEERKVDPKEFASMQQ+S KKENN+IF KLGSEKDKRKEIA+K+ER KK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERNKK 300

Query: 301 SLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTSNVAAPSIEDPGQFPTLGAK 355
           SLSINEFLKP EGERHY  GGRGRGRGRGSRGGYSG S SNV APSIEDPGQFPTLGAK
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAK 359

[Close]

BLAST of Sed0000430 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-72
Identity = 199/375 (53.07%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+T+NPFDLL DDDAEDPSQL  A +      K G   + PA           LPSKPLP
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSGQVSSLPA------KSAPKLPSKPLP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNN------ESAPVDGEAGK 120
           PAQAVREAR++  RGG G G     G+ RGR  G + RD  NN           +G+  K
Sbjct: 61  PAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSK 120

Query: 121 LTERREFSG--PRGR---------GGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKR 180
            +  R   G  PRG          GGRRGGF+N EG DGERPRR +ER SGTGR ++FKR
Sbjct: 121 SSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKR 180

Query: 181 EGSGRGNWGRPTDEFAEVTEEVVN-EREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPE 240
           +GSGRGNWG P +E A  TE V   E EK  G EKP  +  A   N E+     EE EPE
Sbjct: 181 DGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPE 240

Query: 241 DKEMTLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDK 300
           DKEMTL+EYEK+LEEK+KAL +L T ERKVD K F SMQQ+S+KK N+EIF KLGS+KDK
Sbjct: 241 DKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDK 300

Query: 301 RKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTS---NVAA 355
           RK+  +K+E+ KK++SINEFLKP EG  +Y  G  GRGRG   RGG S   +    N AA
Sbjct: 301 RKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAA 355

[Close]

BLAST of Sed0000430 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-63
Identity = 189/380 (49.74%), Postives = 231/380 (60.79%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M++VNPFDLL DDDAEDPSQ++A+K    P     P QT          K   +P+KP P
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK----PLKVVAPVQTA---------KSGKMPTKPPP 60

Query: 61  PAQAVREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNES-APVDGEAGKLTERR 120
           P+QAVREARN  G GGRG+GRGG   YGRG  GG+  RDS NN+  A  +G  G      
Sbjct: 61  PSQAVREARNAPG-GGRGAGRGG--SYGRGGRGGN-NRDSRNNDGPANENGYGGGYRRSE 120

Query: 121 EFSGPRG-------RGGRRGGFNN-GEGTDGERPRRVYERHSGTGRENEFKREGSGRGNW 180
           E  G R        RG RRG ++N G+  D ERPR+ Y+RHS T   NE KR+G+GR NW
Sbjct: 121 EGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANW 180

Query: 181 GRPTDEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEY 240
           G   D+   VTEE     +K+   EK   EG+A     E  A++ EE +PEDKEMTLEEY
Sbjct: 181 GTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEMTLEEY 240

Query: 241 EKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENN-EIFAKLGSEKDKRKEIAEKD 300
           EK+LEEK+KAL A K EERKVD K F +MQQ+SSKK NN E+F KLG+EKDKR  I E++
Sbjct: 241 EKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITERE 300

Query: 301 ERTKKSLSINEFLKPVEGERHYAP-----GGR-------------GRGRGRGSRGGYSGI 353
           E+T+KSLSINEFLKP +G+ +Y P     GGR             GR    G R    G 
Sbjct: 301 EKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGG 359

[Close]

BLAST of Sed0000430 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-60
Identity = 182/375 (48.53%), Postives = 221/375 (58.93%), Query Frame = 0


Query: 1   MSTVNPFDLLGDDDAEDPSQLIAAKKVAPPPPKKGPAQTKPAPVGAQPNKPASLPSKPLP 60
           M+++NPFDLLG DDAEDPSQL  A             + + A    QP K A  P+KP P
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS----------QKVEKAAAAVQPPKAAKFPTKPAP 60

Query: 61  PAQAVREARN--EGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNNES-APVDGEAGKLTE 120
           P+QAVRE+RN  +GGRGG G GRG   G+ RGR  G + RD+ NN++    +G +G    
Sbjct: 61  PSQAVRESRNAPQGGRGGTG-GRG---GFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRR 120

Query: 121 RREFSGPRGRGG--------------RRGGFNNGEGTDGERPRRVYERHSGTGRENEFKR 180
             E +    RGG              RRGG  NGE  D ERP R Y+RHS TG     KR
Sbjct: 121 PSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKR 180

Query: 181 EGSGRGNWGRPTDEFAEVTEEVVNEREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPED 240
            G GRGNWG   D+    +EE   E EKS   EK   E +      E  A+E  + E E+
Sbjct: 181 NGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEE 240

Query: 241 ---KEMTLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKE-NNEIFAKLGSE 300
              +EMTLEEYEK+LEEK+KAL A K EERKVD K F SMQQ+S+KK  + EIF KLGS+
Sbjct: 241 AEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSD 300

Query: 301 KDKRKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGR-GRGSRG-GYSGISTSNV 353
           K+KRK+  EK    KKSLSINEFLKP +G+R+   GG  RGR GRG RG G +       
Sbjct: 301 KEKRKDATEK---AKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEA 357

[Close]

BLAST of Sed0000430 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-59
Identity = 165/311 (53.05%), Postives = 198/311 (63.67%), Query Frame = 0


Query: 65  VREARNEGGRGGRGSGRGGGRGYGRGREGGSFYRDSFNN------ESAPVDGEAGKLTER 124
           VREAR++  RGG G G     G+ RGR  G + RD  NN           +G+  K +  
Sbjct: 48  VREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSKSSYE 107

Query: 125 REFSG--PRGR---------GGRRGGFNNGEGTDGERPRRVYERHSGTGRENEFKREGSG 184
           R   G  PRG          GGRRGGF+N EG DGERPRR +ER SGTGR ++FKR+GSG
Sbjct: 108 RRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSG 167

Query: 185 RGNWGRPTDEFAEVTEEVVN-EREKSAGDEKPVQEGDAGAVNTENFAKEPEETEPEDKEM 244
           RGNWG P +E A  TE V   E EK  G EKP  +  A   N E+     EE EPEDKEM
Sbjct: 168 RGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPEDKEM 227

Query: 245 TLEEYEKLLEEKRKALLALKTEERKVDPKEFASMQQISSKKENNEIFAKLGSEKDKRKEI 304
           TL+EYEK+LEEK+KAL +L T ERKVD K F SMQQ+S+KK N+EIF KLGS+KDKRK+ 
Sbjct: 228 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 287

Query: 305 AEKDERTKKSLSINEFLKPVEGERHYAPGGRGRGRGRGSRGGYSGISTS---NVAAPSIE 355
            +K+E+ KK++SINEFLKP EG  +Y  G  GRGRG   RGG S   +    N AAP+I 
Sbjct: 288 -DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIG 345

[Close]

BLAST of Sed0000430 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family )

HSP 1 Score: 205.7 bits (522), Expect = 6.2e-53
Identity = 130/220 (59.09%), Postives = 155/220 (70.45%), Query Frame = 0


Query: 139 GTDGERPRRVYERHSGTGRENEFKREGSGRGNWGRPTDEFAEVTEEVVN-EREKSAGDEK 198
           G DGERPRR +ER SGTGR ++FKR+GSGRGNWG P +E A  TE V   E EK  G EK
Sbjct: 51  GGDGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EK 110

Query: 199 PVQEGDAGAVNTENFAKEPEETEPEDKEMTLEEYEKLLEEKRKALLALKTEERKVDPKEF 258
           P  +  A   N E+     EE EPEDKEMTL+EYEK+LEEK+KAL +L T ERKVD K F
Sbjct: 111 PAVDDVAADANKEDTV--VEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVF 170

Query: 259 ASMQQISSKKENNEIFAKLGSEKDKRKEIAEKDERTKKSLSINEFLKPVEGERHYAPGGR 318
            SMQQ+S+KK N+EIF KLGS+KDKRK+  +K+E+ KK++SINEFLKP EG  +Y  G  
Sbjct: 171 ESMQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRG 230

Query: 319 GRGRGRGSRGGYSGISTS---NVAAPSIEDPGQFPTLGAK 355
           GRGRG   RGG S   +    N AAP+I D  QFP+LG K
Sbjct: 231 GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 265

The following BLAST results are available for this feature:

BLAST of Sed0000430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514394.1	4.2e-152	85.32	RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959731.1	1.2e-151	85.24	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
XP_022959730.1	6.1e-151	85.28	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
KAG7025351.1	7.9e-151	84.68	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6592943.1	1.0e-150	84.68	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Sed0000430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	1.7e-71	53.07	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	3.7e-66	58.61	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	1.9e-62	49.74	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	4.3e-59	48.53	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Sed0000430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5P3	5.9e-152	85.24	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1H755	2.9e-151	85.28	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KTS3	8.5e-151	84.68	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EYL1	7.2e-150	83.84	RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1KVE4	2.1e-149	83.84	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Sed0000430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	1.2e-72	53.07	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	1.3e-63	49.74	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	3.1e-60	48.53	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	3.4e-59	53.05	Hyaluronan / mRNA binding family	[more]
AT4G16830.2	6.2e-53	59.09	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..251
None	No IPR available	GENE3D	6.10.140.1040		coord: 143..256 e-value: 1.2E-9 score: 40.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..354
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 1..354
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 145..253 e-value: 3.9E-35 score: 132.7
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 145..252 e-value: 4.3E-26 score: 92.0
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..78 e-value: 1.3E-18 score: 67.5
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000430.1	Sed0000430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding