Sed0002314 (gene) Chayote v1

Overview
NameSed0002314
Typegene
OrganismSechium edule (Chayote v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
LocationLG10: 35169724 .. 35174249 (-)
RNA-Seq ExpressionSed0002314
SyntenySed0002314
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGACAGTTAGAAGTTCGATATATATTCCGACCGATCAACAAGTTGTAGATGGTTTCTCTCTTTTAAGTCATTTCGTGACGAACTTGGCCTCGCTCTCTACTCGCCGCGCTCGAGGAGGGATGTCAAGATAGAGCCCTAGTCCCTCCTCTCTCTATTTCTTTGTATTCCTTCATTATACAACTTTAATCTTTGTTAAAGTACTATGCTATCTTTTTCTCTCATAGTGTATATCGTGTACAAAGGAGGTCCACTCCTTTTGGCTCTTTGTTTCAATAAAATCCAAATTTATCCTCAAAATGCTTTCTCTTCATCTTCCATTTCTTCGCTCTCGATTCAAATCCTTCGATTATTACCTTTTTCTTTTCAAAATTTCATCCTTAATTTCCGCCATGAAGATTGTTATTGTGTTTTTTGTTTTACATAATTTTTTCTTGTAGGTTGTTTCCAAGCTTTTTTTGAATGGATATGAGCGATTGGAGACTCACTCAAGGTGGAGAACCTGGAGTTGAATCCGGCGATTGGAGGTCTCAATTGCAGCCCGATCTTCGACAACAAACTGTTAACAAGATGTATGATTTCTTACTCTGCCATTATATATTTGACAAATGTGTTCAAGTCTTTATGGCTTTTTATTTCTTAGTTCCTTGCTTAGATTTTGTTACTATGGGATGGTTATATGTTTTAAACTATGATTAGTAAAATTTCTCAACATTTTTCTTCCTCACATTTTGTGTATAACTCTCCCCAAGGGGTGCAACAAAAAACCGGAAAACCGAACCCAACTAATCCAATCTAATGGATCGGATCGGTTTTTTACCTCAAAGTTGGACATATCGATTTGTAATTTGAAAAAACTGAAAATATTGGATCGGTTCCGATTTTCGTTTTAAAAAATTAATAAAAACCGATCCAAACCGAAATATATATATATATCGTCAATACTTCATATAAAATCATCTTCTTTCCATTAATATTTCTTTAGTTCACTCCTATTTCAAGTAAAAAACATCCTTAAATAATTTTGAATAAGTTAAAAATACTTATAACCTTTAAAAAAAAATTGTTTATGAGAAGGTTGTTTTTATATGAGAAATATTGTTTTTGATATATTAAAAAAAAATTGGACATTGGATTGGATCGGATCCATTTTTGGACATTGAAAAACTGAACCAATAGTTTTATACTTTATTGGACATTGGATCGGATCCATTTTTTTGAAAATCGAAGATATTTGTTCGGTTGTCGGTTTGGTACAAAACTGACAAAAACCGAACCGAAATCACCCCACATGTGATATTATTCTTTCGATGTATCTGGTGTCTGACCTAAGAACAGGTGTAGAAACTCTTGTTTCAAAAATAAAAAACATTTTGTCATTTTGTGTATAATATATAGATGCAAACTTTTTCAGAACCTAGTTCCTTAAATTTATCCGAATTGAGGGATGTTAGGCTACCCCTTCTTTAAAGATAAGTTTTTTAGTATATAAGGGATTGAGGGACTTGAACCATGTGTATCTATAGATTCGGTATGTCAATTGAGGTATGAATGATCACTTTGACATAAGGAGTAAAAGTGTTTTTTAAGCAACAATTAGAAGTGGGGGATTTGAATCTGTAACCTCTTGGTCATTAGGTCATACAAGATGCGACTAGAGCTTGGTTCATTTTGGTGAAGTGTTGTAGCCGCATGGATCTTGTTTAATTTTTCTTGATGGTTCTCAAGTTCTTTTTTTTTTATTTTTTTTGAATAATGACACTAGTCAAGTTCATTCCTTTAAAATGTCTAATACTTTTTTTTTTGGAAGAATATAGTTTATTAAGGAGCATGTAAGAAACATACCCAAAGGAAAGAAAAGACTTACATAGAGTTCTTACAAAAAGTTCTTCGAGTTAAGAGCAATATTAGAAACATCATAATGATTGTATAATGGCGATTTAGCACGCCAGGACGCAGCCGAAATACTAATATCATCCCAAAGTTGTAAGGTAGTCTTGCATTTGTTGTTGTCATTGAACATACTATCATTTATCTTACTCCAAAGCCACAAGAATAACGCAACTATAATATTTTGAATCATCACCAACCTAGCGCGAGTTGGCTTCCATAATAGACTGCAAAAAAAGCCACCTGAACAGAAGTATTATCTTCAAGTGGAAACGTCACAGGAAGTTGATGACGAATCACAAAAAAAGAACATGTGTGCAGCAGTTTCAGCCTTCCTATTACATAAAGGACACCATTGCAGATTGAGCATAATGATAGAATTTCTTCTTTGAACCATATCGGCTGCGTTCAAACTGTTATAGAAACTAGTCCATAAAAAGACTTTAATTTTCTTCGGAATATAAGTCATGGAATTCACTGTAGTTTTTGTGTTCAATAAACTAGATATCCATTATGTTTTCCATTTTTATGTTAGAATGGAGACATTGAAGAGTCACCTTCCTGTTTCTGGTCACGAGGGATTGAGTGAGCTGAAAAAGATTGCCGAAAGGTTTGAAGAGAAGTTGTACACTGCCGCTACCAGTCAGGTATTTCCAGCTCATTTTGTTTTAGTTTAAATCAAAGATTATAAGAACAAACTTATTCAAATGATGTTTAGCCCATTTTCGAATTATTACATCAAGATTTAGTTGTGTAATGAAACATACTTTTCTATAATAACTTGTGCATGTCAACTTACATGCATAAACCAGGTTTTTCTTTGGCTGGTTGTTTCTCTTTGTATTTAGTCTAAAAATAGAAAAAAGTGATGTTTTGTGGTCATGTAATTATTTTATTTTTTGTGCATATTAGTTTGTAAGTGATGACCCCGTTTGATAATCGTTTCGTTTTTTGTTTTTTGTTTCTAGTTTCACATTTTTAGATTTAAATTTTTTTATTTTAAAAAATAAAAATCGTATACGTTTATAACTCATTTTAATTTTCTGTTTTTGAAAATTAAAAACCAAAAAACATGTTTGATAACTGTTTTTTGTTTTCAAACATCACTTTTTGTTTATATATATATATATATATATATATTTTAGTTTTTTACTAATTATTCTTGATTGTTTCATGCTTTTTTAAAAATAAAAACAAAAATGTGTTTTTGAAAGTTACTTCTTTTAGTTTTTATAATTCCTTTAATATTTTTTTAAAAAATTTAAAATTTTAAAAACAAAAACAAAAATTGATTATCAAACAAACCTGTTTTTAAAATATTAAAAACAAAAACAAAAAACAAAAAACGAAATGGTTATCAAACGTGGCCGTAATTATTCACTTAGTCTCATTTTTCTTGATTTGAGTCTCTTTCGGTACCTGGGGTCTTTTTGTGGACTTTTGTTTTTGGATGTCCTCGTATTCTTCTATTTTTTTTTAATCAATGAAAGCTCAGGGTGTGATTAGATTTTGGAGTTGAAAAGAGGAAAGGAGAGGAAGTGGAAAAGGAAGAGAAAGTTGACTGATTTAGATAAATAAAGTAATTATTTGGAGATTGGTATTTTGTAGAGAAGATGTTCTAAAAAGTATTTATTTTATATTATTTTTTTAAATATAATCATTGCATAATTATATTAATTCATTAATTTAATATATTTTATTTTATATTATGTGGTAAAAATTAGAGTAAATTTGATGCTATATTTGATAAGATTAGATAAAAGATATTTTATATTATATTATATGACTGAAAATTAGAAAAGATTTGATGTGATATTTAAAAGATTGAGTAAAAGATTTGATGTGATGTTGGAGAAACGAGGTTGAGGAGAGGTTTGATGTCCTAGAAACAAATATGAAGTTGGGAAATCTCAACTCGTTCTCTTTCCTCTCCTCTCCTCAACAACAAATCCCAAACAGTATTTTATATATAAGAAAAGGATTGTAAATATTTTGTGTTCTTGGACTAAAGACAACATTGCTTTAGCTATCTCTTGAGCATTTTTACCAATTCTATTTGTAACCTATGATTTCAGTCAGATTATTTGAGGAAAATATCTTTGAAGATGCTTACTATGGAAATCAAGAACCCTCACGTGGAAAATTCATTAACGTCCAATTCTATGGTGCCTAACAGTAAAGCCTCTGGATTCTAGTAAGCCATTAACATCTATCTTTTACCCGATGAAATTTTTTGTAAGCCAATTTGTTAATGAATTTTTGGATTCGAGTATACCCTTGCTAATGGCTTGCACGTCGTCGGGGTCGGTCACGTATGTGCGAGGCACGAAGCTTACTTTTTTTGCTTGGATGCTCAACCCTATGGTGGAGTTCCTTACTTGGTATATTTCGATATACTTACCCGCCACATTTGACAGGTATGGACCCATTCCACGGTGACTAGGTTGAGGAGCTGCAACGATCATGAATAGAACGTCATTTTCTCCCGTGCATTGTCGTGTTGTTTATTTTACGAATTATATATTGTTGGACTTTAGCATGTACTCTTTTAAACTCCTGAGATCCCGTAACTGTTTTAGAATTTGAACTCTTAGTATGCTTTTATGGATGCTTTCATGAATTTACAAAACTCTTTATG

mRNA sequence

GGGACAGTTAGAAGTTCGATATATATTCCGACCGATCAACAAGTTGTAGATGGTTTCTCTCTTTTAAGTCATTTCGTGACGAACTTGGCCTCGCTCTCTACTCGCCGCGCTCGAGGAGGGATGTCAAGATAGAGCCCTAGTCCCTCCTCTCTCTATTTCTTTGTATTCCTTCATTATACAACTTTAATCTTTGTTAAAGTACTATGCTATCTTTTTCTCTCATAGTGTATATCGTGTACAAAGGAGGTCCACTCCTTTTGGCTCTTTGTTTCAATAAAATCCAAATTTATCCTCAAAATGCTTTCTCTTCATCTTCCATTTCTTCGCTCTCGATTCAAATCCTTCGATTATTACCTTTTTCTTTTCAAAATTTCATCCTTAATTTCCGCCATGAAGATTGTTATTGTGTTTTTTGTTTTACATAATTTTTTCTTGTAGGTTGTTTCCAAGCTTTTTTTGAATGGATATGAGCGATTGGAGACTCACTCAAGGTGGAGAACCTGGAGTTGAATCCGGCGATTGGAGGTCTCAATTGCAGCCCGATCTTCGACAACAAACTGTTAACAAGATAATGGAGACATTGAAGAGTCACCTTCCTGTTTCTGGTCACGAGGGATTGAGTGAGCTGAAAAAGATTGCCGAAAGGTTTGAAGAGAAGTTGTACACTGCCGCTACCAGTCAGTCAGATTATTTGAGGAAAATATCTTTGAAGATGCTTACTATGGAAATCAAGAACCCTCACGTGGAAAATTCATTAACGTCCAATTCTATGGTGCCTAACAGTAAAGCCTCTGGATTCTAGTATGGACCCATTCCACGGTGACTAGGTTGAGGAGCTGCAACGATCATGAATAGAACGTCATTTTCTCCCGTGCATTGTCGTGTTGTTTATTTTACGAATTATATATTGTTGGACTTTAGCATGTACTCTTTTAAACTCCTGAGATCCCGTAACTGTTTTAGAATTTGAACTCTTAGTATGCTTTTATGGATGCTTTCATGAATTTACAAAACTCTTTATG

Coding sequence (CDS)

ATGGATATGAGCGATTGGAGACTCACTCAAGGTGGAGAACCTGGAGTTGAATCCGGCGATTGGAGGTCTCAATTGCAGCCCGATCTTCGACAACAAACTGTTAACAAGATAATGGAGACATTGAAGAGTCACCTTCCTGTTTCTGGTCACGAGGGATTGAGTGAGCTGAAAAAGATTGCCGAAAGGTTTGAAGAGAAGTTGTACACTGCCGCTACCAGTCAGTCAGATTATTTGAGGAAAATATCTTTGAAGATGCTTACTATGGAAATCAAGAACCCTCACGTGGAAAATTCATTAACGTCCAATTCTATGGTGCCTAACAGTAAAGCCTCTGGATTCTAG

Protein sequence

MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVPNSKASGF
Homology
[Close]
BLAST of Sed0002314 vs. NCBI nr
Match: XP_038887807.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-38
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQG EPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSG EGLSEL+KIA
Sbjct: 1   MDANNWRPTQGAEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+ PH+  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 8.4e-38
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 8.4e-38
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQG EPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSG EGLSEL+KIA
Sbjct: 1   MDANNWRPTQGAEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+ PH+  SL SN MVP++K
Sbjct: 61  IRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 8.4e-38
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.2 bits (422), Expect = 8.4e-38
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 61/107 (57.01%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKI 60
           MD ++WR +   GEP +++GDWR+QL PD RQ+ VNKIMETLK HLP SG EG++EL++I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP 107
           A RFEEK+++ A +Q+DYLRKIS+KMLTME K+   +N+  S++ +P
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKS---QNAAGSSAAIP 104

[Close]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.1e-38
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.3e-38
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA
Sbjct: 1   MDTNNWRPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL SN MVP++K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD R + VNKIMETLK HLPVSG EGLSEL+KIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSLTSNSMVPNSK 110
            RFEEK++TAATSQSDYLRKISLKMLTME K  P + N L SN MVP++K
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match: A0A1S3C0H1 (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD ++WR TQGGEPG+E+GDWRSQLQPD R + VNKIMETLK HLPVSG EGLSEL+KIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSLTSNSMVPNSK 110
            RFEEK++TAATSQSDYLRKISLKMLTME K  P + N L SN MVP++K
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNK 110

[Close]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match: A0A6J1EI34 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434564 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 1   MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIA 60
           MD S+WR  QGGE GV++GDWRSQLQPD R + VNKIMETLK HLPVSGHEGLSEL+KIA
Sbjct: 1   MDSSNWRPAQGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRKIA 60

Query: 61  ERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVPNSK 110
            RFEEK+YTAATSQSDYLRKISLKMLTME K+     +L SNSMVP +K
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQ--TTALPSNSMVPTNK 107

[Close]
BLAST of Sed0002314 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-28
Identity = 61/107 (57.01%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKI 60
           MD ++WR +   GEP +++GDWR+QL PD RQ+ VNKIMETLK HLP SG EG++EL++I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP 107
           A RFEEK+++ A +Q+DYLRKIS+KMLTME K+   +N+  S++ +P
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKS---QNAAGSSAAIP 104

[Close]
BLAST of Sed0002314 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 18  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDY 77
           +GDWR+Q     R + VNKIMET    LP    EG +EL+KIA RFEEKL+  A++Q++Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 78  LRKISLKMLTMEIKNPHVENSLTSNSMVP 107
           LR+I +KML ME K+ +   S +++   P
Sbjct: 64  LRQICMKMLNMETKSQNAAGSSSADDNTP 92

[Close]
BLAST of Sed0002314 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 18  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDY 77
           +GDWR+Q     R + VNKIMET    LP    EG +EL+KIA RFEEKL+  A++Q++Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 78  LRKISLKMLTMEIKNPHVENSLTSNSMVP 107
           LR+I +KML ME K+ +   S +++   P
Sbjct: 64  LRQICMKMLNMETKSQNAAGSSSADDNTP 92

[Close]
BLAST of Sed0002314 vs. TAIR 10
Match: AT2G10440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 1628 Blast hits to 1350 proteins in 149 species: Archae - 0; Bacteria - 39; Metazoa - 480; Fungi - 159; Plants - 187; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 10 QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVS-------GHEGLSELKKIA 69
          QGG     +   DWRSQ +P+LRQ+ ++KI+ +L  +  V         HE   ++  IA
Sbjct: 12 QGGNRDAANNRIDWRSQHEPELRQKVLSKIVCSLNDYRKVEKFKEKFHAHEEY-KINDIA 71

Query: 70 ERFEEKLYTAATSQSDYLRKIS 83
           +FEE  Y+ AT ++DYLRK+S
Sbjct: 72 SKFEENFYSIATDKNDYLRKLS 92

[Close]
BLAST of Sed0002314 vs. TAIR 10
Match: AT2G10440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits to 5104 proteins in 317 species: Archae - 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 10 QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKL 69
          QGG     +   DWRSQ +P+LRQ+ ++KI+E  K       HE   ++  IA +FEE  
Sbjct: 12 QGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKF--HAHEEY-KINDIASKFEENF 71

Query: 70 YTAATSQS 76
          Y+ AT ++
Sbjct: 72 YSIATDKT 76

The following BLAST results are available for this feature:
BLAST of Sed0002314 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887807.16.4e-3877.27mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida][more]
KAG6571702.18.4e-3878.18Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy... [more]
XP_038887614.18.4e-3877.27mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida][more]
XP_022963528.18.4e-3878.18mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_023553730.18.4e-3878.18mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub... [more]
BLAST of Sed0002314 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1711.8e-2757.01Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
BLAST of Sed0002314 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HI154.1e-3878.18mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1HR605.3e-3878.18mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A5D3C6P81.7e-3675.45Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak... [more]
A0A1S3C0H11.7e-3675.45mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ... [more]
A0A6J1EI345.0e-3676.15mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
BLAST of Sed0002314 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.11.3e-2857.01unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.15.6e-1647.19unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.25.6e-1647.19unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G10440.21.3e-0739.02unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G10440.11.0e-0438.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 20..100
e-value: 2.1E-23
score: 84.2
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILY47040Kix domain of CBP (creb binding protein)coord: 19..90
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 19..92
e-value: 9.8E-35
score: 118.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 1..108
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002314.1Sed0002314.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003712 transcription coregulator activity