Sed0007682.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTACAAACCCTAACCCACAAATCGGCTTGGATTGGCGCGCATTTGAGTTCCCACGAATTTGCAAAAATTGAATGAAAAGAAATCTTGCAATTCCTTTCGTGATCGAATCGCCATAGTCGGAAGGTCAACACTCTCAGAGATCGAGCTCAATGACCGGTAGAAAACAAGGTGAAACGCCGGCCGATGACGGCGGATCTGGTACGAAGCAACCGCGCATCAAAATCTCAAAATCCTCCGAAGCAGGCGATGCCAAGGTCTTGCTTCCTTCCCTTTCATACTCGTTATTTTGATTGCATTTGACTGATTTGTTGAAATGGCTTGGAACTATGATACCCACGATTTCATTTAGTCGGGGGTCTCGCTGCCCGGTCAGTGAGCAGGGATCTCTCTTTAAACTGTTTGTGTTTTCGTATTGAGTTGTTTTTGTGTATCGGGTCATATTTTGTAATAGGGTTTTATTTTATAATAGGGATTTTCAAATGTACTTATAAATTATATTAAAACCCTATCCCTAATTTCAGTACATTTTTGCATGCTTATCTACTTTAAAAAATGGCTCATCTCCTTTGCTCGTGGACATAGCTAACACGAGAACACGTAAATCTTTGTGTTTTGTCTCACATTCTTTGTTATTTTTCTTTGATGTTTGTTCCGATTTCATAACATGATTTGTCATATTAGTGGTTCTAGGAGGCACAATAGATAGCAAAATCTTTGAGTTGTTATCTGAGCTATGAGTTTTCTAAATTGTTTCTGTGAGAAGACTACCACATTGCACTAAATTGTTTCTTTGATGTTTCTAAATTGTTATCTGAGCTTTGAGTTGTTATCCCTGCTCACTGACTGGGTCTCGCTGCCCGGTCAGTGAGCAGGGATCTCTCTTTAAACTGTTTGTGTTTTCATATTGAGCTGTTTTTGTGTATCAGGTCATATTTTGTAATAGGGTTTTATTTTATAATAGGGATTTTCAAATGTACTTATAAATTATATTAAAACCCTATCCCAATTTCAGGACATTTTTGCCTGCTTATCTACTTTAAAAAATGGTTCATCTCCTTTGCTTGTGGACATAGCTAACACGAGAACACGTAAATCTTTGTGTTTTGTCTCACATTCTTTGTCATTTTTCTTTGATGTTTGTTCCGATTTCGTAACATGATTTGTCATATTAGTGGTTCTAGGAGGCATAATAGATAGCCAAATCTTTGAGTTGTTATCTGAGCTATGAGTTTTCTAAATTGTTTCTGTGAAAAGACTACCACATTGCACTAGCCCCACTTTATCGCTAGCCATTTTCTGCTGTTGTAGAGTGCTAGCAAGAAGCTTAAAGACATGGAAATTTGTGTTCCAATAGTTTGTGGAACTATCGCATTTTACCTTGGTCGGAAGGCCAGTGAGTAAGTTTGTAATCTTCTGGGGCTGTTTCATTTCCCCTTCTACATTTCAGGCATTTGGCTGGCTAAATTTATCCAATGTTTTTATCCCCCGTTAGGTCCCAGTCGCATAAATGGACGGTCTATGTGCGTGGTGCTACTAATGAGGATATCGGGGTTGTGATAAAGAGAGTTGTGTTTCAGTTGCATCCTAGCTTTAACAACCCTACAAGAGTTGTAGAATCACCGCCTTTTGAATTATCCGAATGTGGCTGGGGAGAATTTGAGATTGCCGTCAACATTTTTTTCCACAGCGACATCTGTGATAAACAATTAGATTTGTAAGTTATTGTCATTATTTTCTTGTTGCATTGATCGCAATCTTGGATTATCATCTATAGTCAGTTATTAAGCTGAAAGTTCATCAGTGCAAAGCTATTTTATTTTAACTATTTTAGTTTATTCATTCTCCTCTGTAAATGGTATAAATACCGCACTCCTGTCATTGAAGAATATGAGGAGAAATAATCTCGAAACTCTGAATTTTTAATTTTATCTGAAAGGCAAATCCTATGTCTAATGCCCTTTTAAATTATTATAGGTTCCACCATTTGAAGTTGTATACTGAAGAGGAATCTGGTCCACAAACAACAAAGAAACCTGTTGTTGTGGAGTCTTACAACGAAATTGTTTTTCCCGATCCATCTGAAGTTTTTTTCGCACGTGTTCAGAATCATCCAGCTGTTGTTGTGCCTCGGCTTCCTGCTGGTTTCACTCTCCCTAATCCTGGTAAATTTCTGCTATTGTGTCTTTCTGACTATCTGTTGCTGTTTAATGTTAATTCTTAGACTGGGTGTATGTAGCACCAATTGAGAATATGGCAGAAAGGGAGAGAGGTGACACCAAGGATCACCCCCATAGTCAGTGGTTCCTGAATTTCTCAGAGGCAGATGAGCTGTTAAAACTCGCAGCTGCTCGCCAACAAGTAGGAATATCTTATTTTTGTACTTTCTTATCTAAATCATATTTTCTCCTACGTCTTAATCTTTCTCTTTCTACATGTTGAAACACTTAAGCTTCCGAAGAGAACATACTTTTGGCATGGTATTATCTTCTTTTGATAAGAAACAATTTCATTATATATATGAAATTACATGGAAAGGATATAGCCAAACACAAAAAAAGTTACAATAGAGATTTTCAACTATTTAAAAGAGAATCAAAGCTACAAGCATGGAGTAGACTCAGTAGAGGATTAATTTTACACCAAAACACCACCAAAAAAGTAATTTTGTCAACAATCCGGCTGATGGATAAGGAGTTATCTATTTTTTTTATCACAACACAATTATTAGTGATATATTGTTAACATATGTTCGCATGTTTTTGATGGTCTTCTTCATCTTGTTGGTGGCAGTGTGATAATATGTCAAAAATGTGGAAGTTTGAAATTCACTCATCGTTGACATTTCCTAGGTTTTGGTGGATTTTGTTATGAAGATTGATATGATGTTTCGATTCCAAATTGATCATGATTCATGATTAGCTTATCCTCTATTCTCTGATATTATGAGCCATAGTCTACTGGAAGGCTCACTATAAAGATTGTAGATTCTGATATTAATATTATTGTTGATCTACTAGGTGCAAGCTCATATTGTCAAGTTGAGAAGACAACAAAGTGTGATGGATGGACCGCCTCAGTTTTCAAAATCAACTGCTGGTTATGATTCACGCGATAAACTGGAGGCTAATAGAGTTCTTCCATGTAGTTAGGTTTTCCTGCCAGTTCTTATGGTTCAGGTTAATGTAAACAACGATGTGTTGGATTCTTCTTTGATATATCCATGCAGTATAAAGTGCTTTTTTAATTGAAGTAGTCTGTGGCTGTTATTGACGTTGTTCACTCACTCATGGTTCAACAATATCATGTAACATCCATATTTTATTGATCCC GTTACAAACCCTAACCCACAAATCGGCTTGGATTGGCGCGCATTTGAGTTCCCACGAATTTGCAAAAATTGAATGAAAAGAAATCTTGCAATTCCTTTCGTGATCGAATCGCCATAGTCGGAAGGTCAACACTCTCAGAGATCGAGCTCAATGACCGGTAGAAAACAAGGTGAAACGCCGGCCGATGACGGCGGATCTGGTACGAAGCAACCGCGCATCAAAATCTCAAAATCCTCCGAAGCAGGCGATGCCAAGAGTGCTAGCAAGAAGCTTAAAGACATGGAAATTTGTGTTCCAATAGTTTGTGGAACTATCGCATTTTACCTTGGTCGGAAGGCCAGTGAGTCCCAGTCGCATAAATGGACGGTCTATGTGCGTGGTGCTACTAATGAGGATATCGGGGTTGTGATAAAGAGAGTTGTGTTTCAGTTGCATCCTAGCTTTAACAACCCTACAAGAGTTGTAGAATCACCGCCTTTTGAATTATCCGAATGTGGCTGGGGAGAATTTGAGATTGCCGTCAACATTTTTTTCCACAGCGACATCTGTGATAAACAATTAGATTTGTTCCACCATTTGAAGTTGTATACTGAAGAGGAATCTGGTCCACAAACAACAAAGAAACCTGTTGTTGTGGAGTCTTACAACGAAATTGTTTTTCCCGATCCATCTGAAGTTTTTTTCGCACGTGTTCAGAATCATCCAGCTGTTGTTGTGCCTCGGCTTCCTGCTGGTTTCACTCTCCCTAATCCTGCACCAATTGAGAATATGGCAGAAAGGGAGAGAGGTGACACCAAGGATCACCCCCATAGTCAGTGGTTCCTGAATTTCTCAGAGGCAGATGAGCTGTTAAAACTCGCAGCTGCTCGCCAACAAGTGCAAGCTCATATTGTCAAGTTGAGAAGACAACAAAGTGTGATGGATGGACCGCCTCAGTTTTCAAAATCAACTGCTGGTTATGATTCACGCGATAAACTGGAGGCTAATAGAGTTCTTCCATGTAGTTAGGTTTTCCTGCCAGTTCTTATGGTTCAGGTTAATGTAAACAACGATGTGTTGGATTCTTCTTTGATATATCCATGCAGTATAAAGTGCTTTTTTAATTGAAGTAGTCTGTGGCTGTTATTGACGTTGTTCACTCACTCATGGTTCAACAATATCATGTAACATCCATATTTTATTGATCCC ATGACCGGTAGAAAACAAGGTGAAACGCCGGCCGATGACGGCGGATCTGGTACGAAGCAACCGCGCATCAAAATCTCAAAATCCTCCGAAGCAGGCGATGCCAAGAGTGCTAGCAAGAAGCTTAAAGACATGGAAATTTGTGTTCCAATAGTTTGTGGAACTATCGCATTTTACCTTGGTCGGAAGGCCAGTGAGTCCCAGTCGCATAAATGGACGGTCTATGTGCGTGGTGCTACTAATGAGGATATCGGGGTTGTGATAAAGAGAGTTGTGTTTCAGTTGCATCCTAGCTTTAACAACCCTACAAGAGTTGTAGAATCACCGCCTTTTGAATTATCCGAATGTGGCTGGGGAGAATTTGAGATTGCCGTCAACATTTTTTTCCACAGCGACATCTGTGATAAACAATTAGATTTGTTCCACCATTTGAAGTTGTATACTGAAGAGGAATCTGGTCCACAAACAACAAAGAAACCTGTTGTTGTGGAGTCTTACAACGAAATTGTTTTTCCCGATCCATCTGAAGTTTTTTTCGCACGTGTTCAGAATCATCCAGCTGTTGTTGTGCCTCGGCTTCCTGCTGGTTTCACTCTCCCTAATCCTGCACCAATTGAGAATATGGCAGAAAGGGAGAGAGGTGACACCAAGGATCACCCCCATAGTCAGTGGTTCCTGAATTTCTCAGAGGCAGATGAGCTGTTAAAACTCGCAGCTGCTCGCCAACAAGTGCAAGCTCATATTGTCAAGTTGAGAAGACAACAAAGTGTGATGGATGGACCGCCTCAGTTTTCAAAATCAACTGCTGGTTATGATTCACGCGATAAACTGGAGGCTAATAGAGTTCTTCCATGTAGTTAG MTGRKQGETPADDGGSGTKQPRIKISKSSEAGDAKSASKKLKDMEICVPIVCGTIAFYLGRKASESQSHKWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAVNIFFHSDICDKQLDLFHHLKLYTEEESGPQTTKKPVVVESYNEIVFPDPSEVFFARVQNHPAVVVPRLPAGFTLPNPAPIENMAERERGDTKDHPHSQWFLNFSEADELLKLAAARQQVQAHIVKLRRQQSVMDGPPQFSKSTAGYDSRDKLEANRVLPCS Homology
BLAST of Sed0007682.1 vs. NCBI nr
Match: XP_022979048.1 (transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 513.5 bits (1321), Expect = 1.2e-141 Identity = 249/271 (91.88%), Postives = 261/271 (96.31%), Query Frame = 0
BLAST of Sed0007682.1 vs. NCBI nr
Match: KAG6603918.1 (Transcription initiation factor TFIID subunit 14b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034099.1 Transcription initiation factor TFIID subunit 14b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141 Identity = 249/271 (91.88%), Postives = 260/271 (95.94%), Query Frame = 0
BLAST of Sed0007682.1 vs. NCBI nr
Match: XP_022950839.1 (transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 511.1 bits (1315), Expect = 6.0e-141 Identity = 249/271 (91.88%), Postives = 261/271 (96.31%), Query Frame = 0
BLAST of Sed0007682.1 vs. NCBI nr
Match: XP_023544997.1 (transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 511.1 bits (1315), Expect = 6.0e-141 Identity = 249/271 (91.88%), Postives = 260/271 (95.94%), Query Frame = 0
BLAST of Sed0007682.1 vs. NCBI nr
Match: XP_038881078.1 (transcription initiation factor TFIID subunit 14b [Benincasa hispida]) HSP 1 Score: 507.3 bits (1305), Expect = 8.6e-140 Identity = 246/271 (90.77%), Postives = 259/271 (95.57%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy Swiss-Prot
Match: Q9FH40 (Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana OX=3702 GN=TAF14B PE=1 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 2.0e-94 Identity = 170/265 (64.15%), Postives = 207/265 (78.11%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy Swiss-Prot
Match: F4IPK2 (Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana OX=3702 GN=TAF14 PE=1 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 1.2e-83 Identity = 144/239 (60.25%), Postives = 187/239 (78.24%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy Swiss-Prot
Match: Q755P0 (Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=YAF9 PE=3 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.0e-31 Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy Swiss-Prot
Match: O95619 (YEATS domain-containing protein 4 OS=Homo sapiens OX=9606 GN=YEATS4 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 7.1e-28 Identity = 60/136 (44.12%), Postives = 90/136 (66.18%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy Swiss-Prot
Match: Q9CR11 (YEATS domain-containing protein 4 OS=Mus musculus OX=10090 GN=Yeats4 PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 7.1e-28 Identity = 60/136 (44.12%), Postives = 90/136 (66.18%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy TrEMBL
Match: A0A6J1IV07 (transcription initiation factor TFIID subunit 14b-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478805 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 5.8e-142 Identity = 249/271 (91.88%), Postives = 261/271 (96.31%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy TrEMBL
Match: A0A6J1GH06 (transcription initiation factor TFIID subunit 14b-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453821 PE=4 SV=1) HSP 1 Score: 511.1 bits (1315), Expect = 2.9e-141 Identity = 249/271 (91.88%), Postives = 261/271 (96.31%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy TrEMBL
Match: A0A5A7SJ54 (Transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001410 PE=4 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 3.9e-138 Identity = 245/274 (89.42%), Postives = 258/274 (94.16%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy TrEMBL
Match: A0A1S3B2R3 (transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485117 PE=4 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 3.9e-138 Identity = 245/274 (89.42%), Postives = 258/274 (94.16%), Query Frame = 0
BLAST of Sed0007682.1 vs. ExPASy TrEMBL
Match: A0A6J1BVC3 (transcription initiation factor TFIID subunit 14b OS=Momordica charantia OX=3673 GN=LOC111005688 PE=4 SV=1) HSP 1 Score: 498.8 bits (1283), Expect = 1.5e-137 Identity = 244/271 (90.04%), Postives = 255/271 (94.10%), Query Frame = 0
BLAST of Sed0007682.1 vs. TAIR 10
Match: AT5G45600.1 (YEATS family protein ) HSP 1 Score: 347.1 bits (889), Expect = 1.4e-95 Identity = 170/265 (64.15%), Postives = 207/265 (78.11%), Query Frame = 0
BLAST of Sed0007682.1 vs. TAIR 10
Match: AT5G45600.2 (YEATS family protein ) HSP 1 Score: 347.1 bits (889), Expect = 1.4e-95 Identity = 170/265 (64.15%), Postives = 207/265 (78.11%), Query Frame = 0
BLAST of Sed0007682.1 vs. TAIR 10
Match: AT2G18000.2 (TBP-associated factor 14 ) HSP 1 Score: 311.2 bits (796), Expect = 8.5e-85 Identity = 144/239 (60.25%), Postives = 187/239 (78.24%), Query Frame = 0
BLAST of Sed0007682.1 vs. TAIR 10
Match: AT2G18000.1 (TBP-associated factor 14 ) HSP 1 Score: 241.1 bits (614), Expect = 1.1e-63 Identity = 108/169 (63.91%), Postives = 138/169 (81.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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