Sed0023223 (gene) Chayote v1

Overview


Name	Sed0023223
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	LG08: 4719811 .. 4722460 (-)
RNA-Seq Expression	Sed0023223
Synteny	Sed0023223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGCATTCAACCCAATGTTCCTGATTCTTGCTCTATTTCTCATCCGCTTAGCAGCGACAGTTTTCGCCGGAGTTTTCGCTACCTGAGGCTTCCGCCGCCGCCGCCGCCGCCGCCGCTCCGTCTTCAAATTGGACGGATCTTCCTTCGGTAACTCTTTTCCCGTTTTGTACTGATTCGACTTCATGTATCTTCGCTCTCTGTTTGTAAATCTTGTTATGTTGGATGAAATATTTCTGTGAGTAATCTGTGTACATTTCGATTGCTTTACTTCAGCCTAAAGTTTGGGGGTTCGAATTGCGAACCTCAAATTTTGATGTTCTTGAAAAGAAAAAAAGAAGGATTGGAATGTTTTTATGTTGATTTGAGATTTATGTTCCGAAGCGGTTGCGTTGAAATGTTTTGTATTATGTTGCCCTACCATTACTTAGACGAGACCTTGTTGGCCGGTCAGCGAGCCATAATCTTATTCAGTATTTTTTGTATTGGGGTTCTATGTATTTTTGGTCGTATTATACGTTGTATTAGAGTTTTAAGAGAGTATACACTTACCCCGTTTTCCGAACATTTTGTACCTTTATCTCCTGATAAAACAGTTTCTCTGATCTGTTCGTGGTCGTACTTAACACAACATTAGTTCTTTCTCTTGCGTTTTCTTGTTCTTCATTATAGTTTGGATGTTAATCTGCCCTTGGACTGGATTGAATTCGTCGCTATTGAACGTTGAAAGTTTTTTTACGTTTTCAACGTGTTTTGGTTGAATCTTGTTAAAAATTCTCCGGTCAACCTTCTAACACTCCCCTCACTTATGAACTTGAAAATCTGAAAAATGTCTAATAAGTAGAAATCAATATTAGTTAGGAGCAAACAACTTCACAAATGTTTGAAAACAAAACCTTCTATTTCTGATACCATTTGAATCATGTTAAATCATCAATTAACACTGAAGTCATTTAATTAGAATATTTGTTAATATATATGCATAGAGGTGCAAGTTGCAAGTACAGCGACGGTGGCAGAGCTTAGAGACGCAGTGGAGCGCATTTTCTATGGAATGAGAATGGATAAAGAAGATGTGTCAAGGTTTCATGGTACGCTGTTGGGGATTGGGAGTTCAGAACCGTGCTTATTAATCTAATCTGTTTGATAGAAAATGTGTTCAATTGTTTATTTGGTGCAAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATTGACGACAAATCACATATCAGACGCTTTGGAATCAGGGATGGAGATCAGGTATTCCCTTAGAATGCTTAACACTATTGCTTAATTTATAGTTTTTATCTCTCTCTTTTGTTTAAGATGTTTGAGTCTTGTCTTGTCTTGTATTTGATCGAGTAATTAATTGCGTTATATGTTCCCTCATGCAGCTGCATTTTGTGAACCGTGTACCTTAATTTTATCCAAGATTCTGTGGATTTTGAGATGACCTAAAAGATATAAAGACTGCTTCTGGTTTAAAGTGATCAATTGGTTTTGGATATGAATTACTGTGAAGTGCTCAAATGGGTCATTTTCTTTTACTTTCCTGATGCTTAATTGAAACTCTTGGTATATATGTATTGGATGAAATCCATTTCATTCGTGCCGCCGCCACTCAAAGACTCCATGGAGCCAAACAGAGCAATAGTTCCGTATGTGCCCAATGACTACCGAAAGATCATGGGTTCGAATATCTCGACCCTCAGTTATTGTATCAAAAAATGAGAGAAAGCGGAAGGAAGAATTGGCGATGATGATGACCAAGTGATCCAAAATTAATACATTTTTTTTAGTCCGAGATTATGAATGCCATTTCCTGATCAGCTTGATACATGGGAGAGTGCAAGCTCTACAGTCTGAAGCTATGAAGTTTGAAGATTTTCATCTGAGCATATATGTTTTGGTGGTCTTAATTTATGCTTTTAGTTAACTGTTTTCCCTTGTACATAAGAGTTAGAAAGTTGAGCAAATAGAGTTGAATATTCCTGATTAATTTTGTTGGAAATCAAAATATTCATTTATTTAAACTTTTCTAATTTTCATTGATTAATGTGTATATTTAGTATTTTTTGAAATTCGGTAGCCTTTTAAGTTAGGTTGATTTAAATATTCATTCTTTTTTTAAAAATCAGAGCTTCATTCCCCTATACTCGGGGGATCTCTGGCCTGTTCCTAGACTGTATCACGGGAATAATTTAAATATTCATTCTATTAATGTGTATTACGTTTCTTACATGATTTGATTTGAGTTGAATTATTATATATATTTTTTTAGTAAAATACATAATTAGTTTTTTTTTTGTTTTTGATTTTTTGAGATAATTTTTTAGAAAATACCGTTTGTATAAGTTGTCTCTAGCTCTCTAAATAGTTTATGTTAATGACTGGTGTTGTCGATTAGATTATTGAAATCTGCCAGAAAATAATGCTAAAAATTGCTCTAATATTATATTAAACTAACTCTAAACTACTAAACTAAAAGTAAAGTTGCTTTCAAAAAAAAAAAAACTAAAAGTAAAGTTAGATCTGTATATTTTAATGTTTTAATACTTTCTTTTTAAAGAAAACAGTTGCATACAAACTTTTGGAGGTGTTTGGATGAGGAATTAGTGTGA

mRNA sequence

ATGTCTCGCATTCAACCCAATGTTCCTGATTCTTGCTCTATTTCTCATCCGCTTAGCAGCGACAGTTTTCGCCGGAGTTTTCGCTACCTGAGGCTTCCGCCGCCGCCGCCGCCGCCGCCGCTCCAGGTGCAAGTTGCAAGTACAGCGACGGTGGCAGAGCTTAGAGACGCAGTGGAGCGCATTTTCTATGGAATGAGAATGGATAAAGAAGATGTGTCAAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATTGACGACAAATCACATATCAGACGCTTTGGAATCAGGGATGGAGATCAGTTGCATACAAACTTTTGGAGGTGTTTGGATGAGGAATTAGTGTGA

Coding sequence (CDS)

ATGTCTCGCATTCAACCCAATGTTCCTGATTCTTGCTCTATTTCTCATCCGCTTAGCAGCGACAGTTTTCGCCGGAGTTTTCGCTACCTGAGGCTTCCGCCGCCGCCGCCGCCGCCGCCGCTCCAGGTGCAAGTTGCAAGTACAGCGACGGTGGCAGAGCTTAGAGACGCAGTGGAGCGCATTTTCTATGGAATGAGAATGGATAAAGAAGATGTGTCAAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATTGACGACAAATCACATATCAGACGCTTTGGAATCAGGGATGGAGATCAGTTGCATACAAACTTTTGGAGGTGTTTGGATGAGGAATTAGTGTGA

Protein sequence

MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPPPPPPPPLQVQVASTATVAELRDAVERIFYGMRMDKEDVSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHTNFWRCLDEELV

Homology

[Close]

BLAST of Sed0023223 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 74/118 (62.71%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MSRI+P VPDSC IS    S+SFRRSFRY +LPP               +VQ+A TATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQL 109
            +RDAVE +F GM M+KED  +S PHVWGHFCLCYKH+KLIDDKS I+ FGIRDGDQ+
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQI 118

[Close]

BLAST of Sed0023223 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MS I+P VPDSC IS    S+SFRRS RY RLPP               +VQV  TATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHT 120
            +RDAVE +F  M M+KED  +S PHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLH 
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Sed0023223 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MS+I+P VPDSC IS    ++SFRRS RY RLPP               +VQV  TATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHT 120
            +RDAVE +F  M M+KED  +S PHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLH 
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Sed0023223 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MSRI+PN+PDSC IS    S+SFRRS RY RLP                +VQVA  A+VA
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  ELRDAVERIFYGMRMDKEDV--SRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLH 110
           +LR+AVE +F GM M++EDV  S PHVW HFCLCYKHYKLID+KS I+RFGIRDGD LH
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 139

[Close]

BLAST of Sed0023223 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MSRI+PN+PDSC IS    S+SFRRS RY RLP                +VQVA  A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  ELRDAVERIFYGMRMDKEDV--SRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLH 110
           +LR+AVE +F GM M++EDV  S PHVW HFCLCYKHYKLID+KS I+RFGIRDGD LH
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 119

[Close]

BLAST of Sed0023223 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 41  LQVQVASTATVAELRDAVERIFYGM---RMDKEDVSRPHVWGHFCLCYKHYKLIDDKSHI 100
           L V V ++AT+ +L+  +++    M    M    +S  HVW +FCL   + KL+DD + +
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 101 RRFGIRDGDQL 109
           +  GIR+  Q+
Sbjct: 124 QDVGIRNNSQV 134

[Close]

BLAST of Sed0023223 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.7e-31
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MS I+P VPDSC IS    S+SFRRS RY RLPP               +VQV  TATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHT 120
            +RDAVE +F  M M+KED  +S PHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLH 
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Sed0023223 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MS+I+P VPDSC IS    ++SFRRS RY RLPP               +VQV  TATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHT 120
            +RDAVE +F  M M+KED  +S PHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLH 
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Sed0023223 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           MS+I+P VPDSC IS    ++SFRRS RY RLPP               +VQV  TATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  ELRDAVERIFYGMRMDKED--VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLHT 120
            +RDAVE +F  M M+KED  +S PHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLH 
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Sed0023223 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.7e-30
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           M RI+PN+PDSC IS    S+SFRRS RY RLP                +VQVA  A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  ELRDAVERIFYGMRMDKEDV--SRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLH 110
           +LR+AVE +F GM M++EDV  S PHVW HFCLCYKHYKLID+KS I+RFGIRDGD LH
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 119

[Close]

BLAST of Sed0023223 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MSRIQPNVPDSCSISHPLSSDSFRRSFRYLRLPP--------PPPPPPLQVQVASTATVA 60
           M RI+PN+PDSC IS    S+SFRRS RY RLP                +VQVA  A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  ELRDAVERIFYGMRMDKEDV--SRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLH 110
           +LR+AVE +F GM M++EDV  S PHVW HFCLCYKHYKLID+KS I+RFGIRDGD LH
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 119

[Close]

BLAST of Sed0023223 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-14
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 20  SDSFRRSFRYLRLPPPP---------PPPPLQVQVASTATVAELRDAVERIFYGMRMDKE 79
           S S RRS  YL+LPP                 V+VA   +VAEL+ AVE++F    ++  
Sbjct: 36  SISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGH 95

Query: 80  D-VSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQLH 110
             +S  HVWGHFCLCY+  +L++DK+ IR  G+ DGDQLH
Sbjct: 96  GMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLH 134

[Close]

BLAST of Sed0023223 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-13
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 24  RRSFRYLRLPPPP--------PPPPLQVQVASTATVAELRDAVERIFYGMRMD-KEDVSR 83
           RRSF Y ++P  P              +QV  TATV EL+ AVE  F  + +     +S 
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISW 84

Query: 84  PHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQL 109
           PHVWG FCL Y+  +LI++  ++  FGI+DGDQL
Sbjct: 85  PHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQL 118

[Close]

BLAST of Sed0023223 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 45  VASTATVAELRDAVERIFYGMRMD-KEDVSRPHVWGHFCLCYKHYKLIDDKSHIRRFGIR 104
           V  TATV EL+ AVE  F  + +     +S PHVWG FCL Y+  +LI++  ++  FGI+
Sbjct: 19  VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIK 78

Query: 105 DGDQL 109
           DGDQL
Sbjct: 79  DGDQL 83

[Close]

BLAST of Sed0023223 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 24  RRSFRYLRLPPPP--------PPPPLQVQVASTATVAELRDAVERIF-YGMRMDKEDVSR 83
           RR+F Y +LP  P              V V ++ATV +L+ A+E  F +  +     +S 
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISW 65

Query: 84  PHVWGHFCLCYKHYKLIDDKSHIRRFGIRDGDQL 109
            HVWGHFCLC+   KLI D   I  +G++DGD++
Sbjct: 66  SHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEV 99

[Close]

BLAST of Sed0023223 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 41  LQVQVASTATVAELRDAVERIFYGM---RMDKEDVSRPHVWGHFCLCYKHYKLIDDKSHI 100
           L V V ++AT+ +L+  +++    M    M    +S  HVW +FCL   + KL+DD + +
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 101 RRFGIRDGDQL 109
           +  GIR+  Q+
Sbjct: 124 QDVGIRNNSQV 134

The following BLAST results are available for this feature:

BLAST of Sed0023223 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880358.1	2.1e-31	62.71	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_011655436.1	1.4e-30	59.69	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443964.1	2.4e-30	58.91	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_023531556.1	5.3e-30	61.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	5.3e-30	61.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of Sed0023223 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	4.0e-04	32.39	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0023223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94	6.7e-31	59.69	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	1.1e-30	58.91	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	1.1e-30	58.91	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A6J1EHC7	9.7e-30	60.50	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A6J1I9W9	1.3e-29	60.50	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]

BLAST of Sed0023223 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	4.3e-14	44.00	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	8.2e-13	41.49	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	3.4e-11	47.69	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	1.7e-10	37.23	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	2.8e-05	32.39	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 37..119 e-value: 1.6E-20 score: 74.8
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 23..109
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 40..109 e-value: 6.1E-17 score: 61.4
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 23..109
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 42..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023223.1	Sed0023223.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex