Lsi11G004080.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004080.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	chr11: 4263185 .. 4263742 (-)
Sequence length	558
RNA-Seq Expression	Lsi11G004080.1
Synteny	Lsi11G004080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTCAGAATCTTCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACTATGACCGCCGCCGCCGCCACACCACCTGCCGCCGCCACTCCAAGCAGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGATACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAGACCTGCCCGTTCTTTGGTTTGCCCAACCCACCTGCCCCCTGCCCCTGCCCGTTGAGACAAGCATGGGGCAGCCTAGATGCCCTGATCGGGAGGCTCCGGGCAGCTTATGAAGAGAACGGCGGCCGGGCAGAGGGAAACCCATTTGGAGCAAGAGCAGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCTTACTAATTCTTCATCAACTCATGATCATCAACATCCTACAACTTGA

mRNA sequence

ATGGATTTGTTCTCAGAATCTTCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACTATGACCGCCGCCGCCGCCACACCACCTGCCGCCGCCACTCCAAGCAGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGATACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAGACCTGCCCGTTCTTTGGTTTGCCCAACCCACCTGCCCCCTGCCCCTGCCCGTTGAGACAAGCATGGGGCAGCCTAGATGCCCTGATCGGGAGGCTCCGGGCAGCTTATGAAGAGAACGGCGGCCGGGCAGAGGGAAACCCATTTGGAGCAAGAGCAGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCTTACTAATTCTTCATCAACTCATGATCATCAACATCCTACAACTTGA

Coding sequence (CDS)

ATGGATTTGTTCTCAGAATCTTCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACTATGACCGCCGCCGCCGCCACACCACCTGCCGCCGCCACTCCAAGCAGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGATACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAGACCTGCCCGTTCTTTGGTTTGCCCAACCCACCTGCCCCCTGCCCCTGCCCGTTGAGACAAGCATGGGGCAGCCTAGATGCCCTGATCGGGAGGCTCCGGGCAGCTTATGAAGAGAACGGCGGCCGGGCAGAGGGAAACCCATTTGGAGCAAGAGCAGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCTTACTAATTCTTCATCAACTCATGATCATCAACATCCTACAACTTGA

Protein sequence

MDLFSESSSNNPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSSTHDHQHPTT

Homology

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-69
Identity = 130/166 (78.31%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL S   + NP + T           TPP++   SRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLISHQPNKNPNSST---------QLTPPSS---SRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 167
           RAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.6e-67
Identity = 126/175 (72.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL S+ + NN    T+ +T   ++ ++PP++   SRYENQKRRDWNTFCQYLRNH PPL
Sbjct: 1   MDLISQ-NHNNRNPNTSLSTQTPSSFSSPPSS---SRYENQKRRDWNTFCQYLRNHHPPL 60

Query: 61  ALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 176
           RAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 RAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 119/157 (75.80%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 23  TAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGK 82
           T A +   A A+PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGK
Sbjct: 26  TGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGK 85

Query: 83  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVR 142
           TKVH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVR
Sbjct: 86  TKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVR 145

Query: 143 LYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSSTHD 180
           LYLREVR+ QA+ARGVSYEKK+++     +++++ HD
Sbjct: 146 LYLREVREHQARARGVSYEKKKRKKPPHPSSAAAAHD 182

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 122/156 (78.21%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 31  AAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTC 90
           A  +PSRYE QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C
Sbjct: 35  APQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAAC 94

Query: 91  PFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRD 150
           PFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF ARAVRLYLREVR+
Sbjct: 95  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVRE 154

Query: 151 FQAKARGVSYE-KKRKRPKQKLT---NSSSTHDHQH 183
            QA+ARGVSYE KKRK+P+Q+     +SS  H HQH
Sbjct: 155 HQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQH 190

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 122/156 (78.21%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 31  AAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTC 90
           A  +PSRYE QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C
Sbjct: 35  APQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAAC 94

Query: 91  PFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRD 150
           PFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF ARAVRLYLREVR+
Sbjct: 95  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVRE 154

Query: 151 FQAKARGVSYE-KKRKRPKQKLT---NSSSTHDHQH 183
            QA+ARGVSYE KKRK+P+Q+     +SS  H HQH
Sbjct: 155 HQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQH 190

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL
Match: A0A0A0LG60 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 164/188 (87.23%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLFSESSSNN--PTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTT T   T  TA   T  +A TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL-TNSSST 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S++T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHQHPTT 186
           HDH   +T
Sbjct: 181 HDHHQDST 188

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL
Match: A0A5D3BFP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001100 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 163/188 (86.70%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSN  NPTT T   T  TA  +   +A TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL-TNSSST 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S++T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHQHPTT 186
           HDH   +T
Sbjct: 181 HDHHQDST 188

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL
Match: A0A1S3C396 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 163/188 (86.70%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSN  NPTT T   T  TA  +   +A TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL-TNSSST 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S++T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHQHPTT 186
           HDH   +T
Sbjct: 181 HDHHQDST 188

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL
Match: A0A6J1HLQ5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465684 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 156/185 (84.32%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MDLFSESSSN---NPTTYTAAATTMTAAAATPP-------AAATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT TAAA      A   P       AAATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 176
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL
Match: A0A6J1FIH1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444424 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.9e-79
Identity = 155/185 (83.78%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   MDLFSESSSN---NPTTYTAAATTMTAAAATPP-------AAATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT TAAA      A   P       A ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 176
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of Lsi11G004080.1 vs. NCBI nr
Match: XP_038890681.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 173/189 (91.53%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTMTAAAATPP----AAATPSRYENQKRRDWNTFCQYLRNH 60
           MDLFSESSSN PTTYT   TT T AA  PP    +AATPSRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLFSESSSNPPTTYT---TTATVAATAPPTASASAATPSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSS 180
           IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+TNSS+
Sbjct: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKVTNSSA 180

Query: 181 THDHQHPTT 186
           THDHQ+PTT
Sbjct: 181 THDHQNPTT 186

[Close]

BLAST of Lsi11G004080.1 vs. NCBI nr
Match: XP_011648733.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_019356 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 164/188 (87.23%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLFSESSSNN--PTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTT T   T  TA   T  +A TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL-TNSSST 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S++T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHQHPTT 186
           HDH   +T
Sbjct: 181 HDHHQDST 188

[Close]

BLAST of Lsi11G004080.1 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA0063568.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa] >TYJ97894.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 163/188 (86.70%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSN  NPTT T   T  TA  +   +A TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL-TNSSST 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S++T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHQHPTT 186
           HDH   +T
Sbjct: 181 HDHHQDST 188

[Close]

BLAST of Lsi11G004080.1 vs. NCBI nr
Match: KAG6586335.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.8 bits (782), Expect = 2.5e-79
Identity = 155/183 (84.70%), Postives = 163/183 (89.07%), Query Frame = 0


Query: 1   MDLFSESSSN---NPTTYTAAATTMTA-----AAATPPAAATPSRYENQKRRDWNTFCQY 60
           MDLFSESSSN     TT TAAA  +TA     ++++  A ATPSRYENQKRRDWNTFCQY
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQY 60

Query: 61  LRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGS 120
           LRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGS
Sbjct: 61  LRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGS 120

Query: 121 LDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLT 176
           LDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ 
Sbjct: 121 LDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIA 180

[Close]

BLAST of Lsi11G004080.1 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 305.1 bits (780), Expect = 4.2e-79
Identity = 156/185 (84.32%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MDLFSESSSN---NPTTYTAAATTMTAAAATPP-------AAATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT TAAA      A   P       AAATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 176
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of Lsi11G004080.1 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-70
Identity = 130/166 (78.31%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL S   + NP + T           TPP++   SRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLISHQPNKNPNSST---------QLTPPSS---SRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 167
           RAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Lsi11G004080.1 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.7e-68
Identity = 126/175 (72.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL S+ + NN    T+ +T   ++ ++PP++   SRYENQKRRDWNTFCQYLRNH PPL
Sbjct: 1   MDLISQ-NHNNRNPNTSLSTQTPSSFSSPPSS---SRYENQKRRDWNTFCQYLRNHHPPL 60

Query: 61  ALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 176
           RAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 RAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of Lsi11G004080.1 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-65
Identity = 129/179 (72.07%), Postives = 144/179 (80.45%), Query Frame = 0


Query: 9   SNNPTTYTAA----ATTMTAAAATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPLALQM 68
           SNN ++ T A    AT   +++++P  +A  SRYENQKRRDWNTF QYLRNHRPPL+L  
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSP--SANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 83

Query: 69  CSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 128
           CSGAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+
Sbjct: 84  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 143

Query: 129 EENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKLTNSSSTHDHQH 183
           EENGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + SSS+    H
Sbjct: 144 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASH 200

[Close]

BLAST of Lsi11G004080.1 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 126/170 (74.12%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 8   SSNNPTTYTAAATTMTAAAATPPAAATP-----SRYENQKRRDWNTFCQYLRNHRPPLAL 67
           S N      AAATT T ++++  ++        SRYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 68  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 127
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 128 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKL 172
           A+EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP   L
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPL 183

[Close]

BLAST of Lsi11G004080.1 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-61
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 27  ATPPAAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVH 86
           ++PP  ATPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH
Sbjct: 23  SSPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVH 82

Query: 87  NQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLR 146
              CP+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLR
Sbjct: 83  VAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLR 142

Query: 147 EVRDFQAKARGVSYE-KKRKRP 168
           EVR+ QAKARG+ YE KKRKRP
Sbjct: 143 EVRESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of Lsi11G004080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	2.4e-69	78.31	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	6.6e-67	72.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	1.2e-65	75.80	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2XVI8	2.1e-65	78.21	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	2.1e-65	78.21	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]

BLAST of Lsi11G004080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60	5.0e-86	87.23	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 S...	[more]
A0A5D3BFP5	1.5e-85	86.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C396	1.5e-85	86.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HLQ5	2.0e-79	84.32	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FIH1	5.9e-79	83.78	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi11G004080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890681.1	1.3e-91	91.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida]	[more]
XP_011648733.1	1.0e-85	87.23	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothe...	[more]
XP_008456451.1	3.0e-85	86.70	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA00...	[more]
KAG6586335.1	2.5e-79	84.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subs...	[more]
XP_022965962.1	4.2e-79	84.32	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]

BLAST of Lsi11G004080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	1.7e-70	78.31	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.7e-68	72.00	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.7e-65	72.07	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-64	74.12	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.5e-61	77.46	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 29..150 e-value: 9.9E-66 score: 219.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 37..164 score: 83.004524
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..185
None	No IPR available	PANTHER	PTHR31165:SF15	PROTEIN G1-LIKE5	coord: 8..180
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 8..180

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G004080	Lsi11G004080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G004080.1.exon.1	Lsi11G004080.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G004080.1.CDS.1	Lsi11G004080.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G004080.1	Lsi11G004080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus