Lsi10G013200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr10: 17407450 .. 17408417 (+)
RNA-Seq Expression	Lsi10G013200
Synteny	Lsi10G013200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGAGATCGTTGAGTTCGTTCCGAGCAACAAATGATGATCATTCCAGCATAATGATCTTCAGCAGTTCAACACAAGAGCCACAAGGAAGACGCTCTCCTGCAGGAAGATTAACATCAATAATGGACGATTCCAATGCCAGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAAGCGAGATCACAATTTGCGCTACAGATTCGTCGAGAGGTGGATTCATTTGATTCCTTTGATTCTAATCCTCGTCCTCTTCATTCTCTGGTGGTGCTCTTATCCAGGTAAATTTCTTCAAGAATATTATGTTTCTCAGACGCATTCATGTAAGTTCCTTCAATCGAATAATCTCATCCGCTTGACAATTCGTTTCTGTTTCTTCTTGCATATGTGATTTGGTAGTTTCTTTAGTTTCCTTTCCGATTTTGTTTATATCAAGAATTTTCCAGTAAATTTCTTCGAGAATTCATTACAAGAATAATCAGTTTCTGATTTCTTCTGTTTCTCAGACGCATTCGCGTAATTTTCTTCAATCGATTAATCTCATCCACTTGGCAATTTGTTTCTGTTTCTTCTTGCATATTACGATTTGGTAGTTTCTTTTACTTTCCAATTTTGTTTTTAACAAAAAATTGTTGAACTATTGCTTTAATTCTAGTTCCTACTCTTTTTCTTAATTTCATCTTGCTGTTTCTTGCCTCCTTTGTTGTTGATCAGTAATTTCTAAATCGATTTGCTAATATTTGAGTTCTTTCTTTTCATACGAACGCAGTGAATTTGGCGATCAAGGATGGAGGAATTAGGGCAGTTTATGAAAACGATCAGTATCCGGAGGCGCCGAAGTACTTTGATCGTGTCGAACTTGCCGTCTTAGGAGATGCTGGAATGCAGATTGCTTCGAGTTCTTTGAATCTAACCAGCGTTGGCGATCGAGATTTACGGATACCGAATAAGGTCGATTGA

mRNA sequence

ATGCAGCAGAGATCGTTGAGTTCGTTCCGAGCAACAAATGATGATCATTCCAGCATAATGATCTTCAGCAGTTCAACACAAGAGCCACAAGGAAGACGCTCTCCTGCAGGAAGATTAACATCAATAATGGACGATTCCAATGCCAGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAAGCGAGATCACAATTTGCGCTACAGATTCGTCGAGAGGTGGATTCATTTGATTCCTTTGATTCTAATCCTCGTCCTCTTCATTCTCTGGTGGTGCTCTTATCCAGGTAAATTTCTTCAAGAATATTATGTTTCTCAGACGCATTCATTGAATTTGGCGATCAAGGATGGAGGAATTAGGGCAGTTTATGAAAACGATCAGTATCCGGAGGCGCCGAAGTACTTTGATCGTGTCGAACTTGCCGTCTTAGGAGATGCTGGAATGCAGATTGCTTCGAGTTCTTTGAATCTAACCAGCGTTGGCGATCGAGATTTACGGATACCGAATAAGGTCGATTGA

Coding sequence (CDS)

ATGCAGCAGAGATCGTTGAGTTCGTTCCGAGCAACAAATGATGATCATTCCAGCATAATGATCTTCAGCAGTTCAACACAAGAGCCACAAGGAAGACGCTCTCCTGCAGGAAGATTAACATCAATAATGGACGATTCCAATGCCAGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAAGCGAGATCACAATTTGCGCTACAGATTCGTCGAGAGGTGGATTCATTTGATTCCTTTGATTCTAATCCTCGTCCTCTTCATTCTCTGGTGGTGCTCTTATCCAGGTAAATTTCTTCAAGAATATTATGTTTCTCAGACGCATTCATTGAATTTGGCGATCAAGGATGGAGGAATTAGGGCAGTTTATGAAAACGATCAGTATCCGGAGGCGCCGAAGTACTTTGATCGTGTCGAACTTGCCGTCTTAGGAGATGCTGGAATGCAGATTGCTTCGAGTTCTTTGAATCTAACCAGCGTTGGCGATCGAGATTTACGGATACCGAATAAGGTCGATTGA

Protein sequence

MQQRSLSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRFSTRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDGGIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNKVD

Homology

[Close]

BLAST of Lsi10G013200 vs. ExPASy TrEMBL
Match: A0A6J1JHI4 (uncharacterized protein LOC111484535 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484535 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.8e-46
Identity = 114/173 (65.90%), Postives = 125/173 (72.25%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP  R    MDDS+ S LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNK 172
           GI+AVY + ++PEAPKY D VELA+LGDAGMQIASS LNLTSVG RDLR P K
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPAK 151

[Close]

BLAST of Lsi10G013200 vs. ExPASy TrEMBL
Match: A0A6J1JI18 (uncharacterized protein LOC111484535 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484535 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.2e-46
Identity = 113/171 (66.08%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP  R    MDDS+ S LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIP 170
           GI+AVY + ++PEAPKY D VELA+LGDAGMQIASS LNLTSVG RDLR P
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTP 149

[Close]

BLAST of Lsi10G013200 vs. ExPASy TrEMBL
Match: A0A6J1FUE4 (uncharacterized protein LOC111448884 OS=Cucurbita moschata OX=3662 GN=LOC111448884 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 111/174 (63.79%), Postives = 124/174 (71.26%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP  R    MDDS+ S+LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSILPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNKV 173
           GI+AVY + ++PEAPKY D VELA+L  AGMQIASS LNLTSVG RDL  P K+
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKI 152

[Close]

BLAST of Lsi10G013200 vs. ExPASy TrEMBL
Match: A0A5D3CTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00940 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.7e-41
Identity = 106/176 (60.23%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 1   MQQRSLSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNAS--LLPISDPRF 60
           MQQR   +FR T D+H S+MI S++++EPQG RS      S+ DD  A+  LLPISDPRF
Sbjct: 1   MQQR---AFRPTTDNHCSVMI-STTSREPQGIRS------SMEDDFTAAGDLLPISDPRF 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRD N RYRF   WIHLIPLIL+L+LFILWW SYP                  IKDG
Sbjct: 61  SIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYP-----------------VIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLR-IPNKVD 174
           GIRA YE ++ PE PKY D  ELAVLGDAGM IASS LNLTSVGDRD R IP+K+D
Sbjct: 121 GIRADYEKERLPEVPKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRIIPSKID 149

[Close]

BLAST of Lsi10G013200 vs. ExPASy TrEMBL
Match: A0A1S3CKP4 (uncharacterized protein LOC103501898 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501898 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.7e-41
Identity = 106/176 (60.23%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 1   MQQRSLSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNAS--LLPISDPRF 60
           MQQR   +FR T D+H S+MI S++++EPQG RS      S+ DD  A+  LLPISDPRF
Sbjct: 1   MQQR---AFRPTTDNHCSVMI-STTSREPQGIRS------SMEDDFTAAGDLLPISDPRF 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRD N RYRF   WIHLIPLIL+L+LFILWW SYP                  IKDG
Sbjct: 61  SIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYP-----------------VIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLR-IPNKVD 174
           GIRA YE ++ PE PKY D  ELAVLGDAGM IASS LNLTSVGDRD R IP+K+D
Sbjct: 121 GIRADYEKERLPEVPKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRIIPSKID 149

[Close]

BLAST of Lsi10G013200 vs. NCBI nr
Match: XP_038902298.1 (uncharacterized protein LOC120088933 [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 3.4e-62
Identity = 127/174 (72.99%), Postives = 142/174 (81.61%), Query Frame = 0


Query: 1   MQQRSLSSFRATND-DHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRFS 60
           MQQR+LSSFRATND DH +IMIFS+ TQEP+GRRSP  R + +MDDSNA LLPISDPRFS
Sbjct: 1   MQQRALSSFRATNDHDHCNIMIFSTPTQEPRGRRSPPSRSSILMDDSNAGLLPISDPRFS 60

Query: 61  TRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDGG 120
           T+KRDHN RYRF ERWIHLIPLIL+L+LFILWW SYP              +N+ IKDG 
Sbjct: 61  TKKRDHNSRYRFAERWIHLIPLILLLILFILWWSSYP--------------VNMVIKDGA 120

Query: 121 IRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNKVD 174
           I AVY NDQ+PEAPKY D VELAVLGDAGMQIASS LN+TS+GDRDLRIP+KVD
Sbjct: 121 ISAVYTNDQFPEAPKYIDHVELAVLGDAGMQIASSPLNVTSIGDRDLRIPSKVD 160

[Close]

BLAST of Lsi10G013200 vs. NCBI nr
Match: XP_022986954.1 (uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 5.8e-46
Identity = 114/173 (65.90%), Postives = 125/173 (72.25%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP  R    MDDS+ S LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNK 172
           GI+AVY + ++PEAPKY D VELA+LGDAGMQIASS LNLTSVG RDLR P K
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPAK 151

[Close]

BLAST of Lsi10G013200 vs. NCBI nr
Match: KAG7010594.1 (hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 9.8e-46
Identity = 113/175 (64.57%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI    S  QEPQGR SP  R    MDDS+ S+LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSINF--SPAQEPQGRCSPEIR---SMDDSSGSILPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNKVD 174
           GI+AVY + ++PEAPKY D VELA+LG AGMQIASS LNLTSVG RDLR P K++
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGGAGMQIASSPLNLTSVGARDLRTPGKIN 153

[Close]

BLAST of Lsi10G013200 vs. NCBI nr
Match: XP_022986953.1 (uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima])

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45
Identity = 113/171 (66.08%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP  R    MDDS+ S LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL IKDG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVIKDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIP 170
           GI+AVY + ++PEAPKY D VELA+LGDAGMQIASS LNLTSVG RDLR P
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTP 149

[Close]

BLAST of Lsi10G013200 vs. NCBI nr
Match: XP_023512016.1 (uncharacterized protein LOC111776853 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-45
Identity = 112/173 (64.74%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MQQRS--LSSFRATNDDHSSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRF 60
           MQQRS   SSFRAT DDH SI+   S  QEPQGR SP    T  MDDS+ S+LP+SDP  
Sbjct: 1   MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPE---TRSMDDSSGSILPVSDP-- 60

Query: 61  STRKRDHNLRYRFVERWIHLIPLILILVLFILWWCSYPGKFLQEYYVSQTHSLNLAIKDG 120
           S RKRDHN RY+F ERWIHLIPLIL+LVLFILWW SYP              +NL I DG
Sbjct: 61  SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYP--------------VNLVINDG 120

Query: 121 GIRAVYENDQYPEAPKYFDRVELAVLGDAGMQIASSSLNLTSVGDRDLRIPNK 172
           GI+AVY + ++PEAPKY D VELA+LGDAGM IASS LNLTSVG RDLR P K
Sbjct: 121 GIKAVYAS-EFPEAPKYIDHVELAILGDAGMHIASSPLNLTSVGARDLRTPAK 151

[Close]

BLAST of Lsi10G013200 vs. TAIR 10
Match: AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 32 RRSPAGRLTSIMDDSNASLLPISDPRFSTRKRDHNLRYRFVERWIHLIPLILILVLFILW 91
          R  P  +  + M+D    LLP  DP     KR+ + R+RF E  IHLIPLIL+L + ILW
Sbjct: 19 RSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREKS-RFRFSENVIHLIPLILLLCVAILW 78

Query: 92 WCSY 96
            SY
Sbjct: 79 LSSY 81

[Close]

BLAST of Lsi10G013200 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-05
Identity = 32/85 (37.65%), Postives = 42/85 (49.41%), Query Frame = 0


Query: 17  SSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRFSTRKRDHNLRYRFVERWI 76
           +SI+    S   P    SP    TS   D +  LLP  DP     K++ + R+R  E  I
Sbjct: 7   ASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKS-RFRSAENAI 66

Query: 77  HLIPLILILVLFILWWCSYPGKFLQ 102
           H IP++LIL   ILW  S PG  +Q
Sbjct: 67  HFIPIVLILCAVILWMFSNPGNQIQ 90

[Close]

BLAST of Lsi10G013200 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 6.9e-05
Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 17  SSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRFSTRKRDHNLRYRFVERWI 76
           +SI+    S   P    SP    TS   D +  LLP  DP     K++ + R+R  E  I
Sbjct: 7   ASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKS-RFRSAENAI 66

Query: 77  HLIPLILILVLFILWWCSYPGKFLQ 102
           H IP++LIL   ILW  S P K  Q
Sbjct: 67  HFIPIVLILCAVILWMFSNPAKIKQ 90

[Close]

BLAST of Lsi10G013200 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 7.6e-04
Identity = 30/80 (37.50%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 17 SSIMIFSSSTQEPQGRRSPAGRLTSIMDDSNASLLPISDPRFSTRKRDHNLRYRFVERWI 76
          +SI+    S   P    SP    TS   D +  LLP  DP     K++ + R+R  E  I
Sbjct: 7  ASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKS-RFRSAENAI 66

Query: 77 HLIPLILILVLFILWWCSYP 97
          H IP++LIL   ILW  S P
Sbjct: 67 HFIPIVLILCAVILWMFSNP 85

The following BLAST results are available for this feature:

BLAST of Lsi10G013200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G013200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHI4	2.8e-46	65.90	uncharacterized protein LOC111484535 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JI18	6.2e-46	66.08	uncharacterized protein LOC111484535 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FUE4	1.5e-44	63.79	uncharacterized protein LOC111448884 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A5D3CTN8	2.7e-41	60.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKP4	2.7e-41	60.23	uncharacterized protein LOC103501898 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lsi10G013200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902298.1	3.4e-62	72.99	uncharacterized protein LOC120088933 [Benincasa hispida]	[more]
XP_022986954.1	5.8e-46	65.90	uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima]	[more]
KAG7010594.1	9.8e-46	64.57	hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022986953.1	1.3e-45	66.08	uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima]	[more]
XP_023512016.1	2.9e-45	64.74	uncharacterized protein LOC111776853 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi10G013200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16840.1	8.1e-06	45.31	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G35658.2	4.0e-05	37.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	6.9e-05	37.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.1	7.6e-04	37.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189:SF7	SERINE/THREONINE-KINASE RLCKVII PROTEIN	coord: 1..171
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013200.1	Lsi10G013200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane