Lsi10G008490.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008490.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	EF-hand domain-containing protein
Location	chr10: 12443037 .. 12443381 (-)
Sequence length	345
RNA-Seq Expression	Lsi10G008490.1
Synteny	Lsi10G008490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAAAGGTTGGTGCTAATTTCCAGGACCTGCTTCCATTAATGGCAGAGAAATTGGGAGGAGATGGGCTGATAAAGGAGCTGTGTAATGGGTTTGAAGTGCTGATGGACAAGGAGAAAGGGTTGATCACTTTGGAAAGCCTTAAGAGAAACTCTTGGCTGTTGGGTGTGCGAGACATGGGAAACGAGGAGCTTCTCAGCATGATGAAGGAGGGCGATTTAGATGGCGATGGTGCTTTGAATCAGATGGAATTTTGTGTCTTGATGTTTAGATTAAGCCCTGATTTGATGCAACACTCTTTGTATTGGCTTCAACATGCTTTGGAAAGCGAGTTTAATTAA

mRNA sequence

ATGGCGAGAAAGGTTGGTGCTAATTTCCAGGACCTGCTTCCATTAATGGCAGAGAAATTGGGAGGAGATGGGCTGATAAAGGAGCTGTGTAATGGGTTTGAAGTGCTGATGGACAAGGAGAAAGGGTTGATCACTTTGGAAAGCCTTAAGAGAAACTCTTGGCTGTTGGGTGTGCGAGACATGGGAAACGAGGAGCTTCTCAGCATGATGAAGGAGGGCGATTTAGATGGCGATGGTGCTTTGAATCAGATGGAATTTTGTGTCTTGATGTTTAGATTAAGCCCTGATTTGATGCAACACTCTTTGTATTGGCTTCAACATGCTTTGGAAAGCGAGTTTAATTAA

Coding sequence (CDS)

ATGGCGAGAAAGGTTGGTGCTAATTTCCAGGACCTGCTTCCATTAATGGCAGAGAAATTGGGAGGAGATGGGCTGATAAAGGAGCTGTGTAATGGGTTTGAAGTGCTGATGGACAAGGAGAAAGGGTTGATCACTTTGGAAAGCCTTAAGAGAAACTCTTGGCTGTTGGGTGTGCGAGACATGGGAAACGAGGAGCTTCTCAGCATGATGAAGGAGGGCGATTTAGATGGCGATGGTGCTTTGAATCAGATGGAATTTTGTGTCTTGATGTTTAGATTAAGCCCTGATTTGATGCAACACTCTTTGTATTGGCTTCAACATGCTTTGGAAAGCGAGTTTAATTAA

Protein sequence

MARKVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEFN

Homology

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot
Match: O81831 (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-31
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 8   NFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRN-SWLLGVRDMGNEEL 67
           NF D LP MA  LGG+GLI ELCNGFE+LMD+EKG+IT ESL+RN + +LG+ D+ +E++
Sbjct: 18  NFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDV 77

Query: 68  LSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
             M+KEGD D DGALNQMEFCVLMFRLSPDLM+ S   +   +E EF
Sbjct: 78  RCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot
Match: Q9LSQ6 (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 9   FQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRN-SWLLGVRDMGNEELL 68
           FQD  P MA KLGG+GLI+E+C GFE+LMDK+KG+IT ESL+RN S +LG+ D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 69  SMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
            M+ EGD D DGALNQMEFCVLMFRLSP+LM+ S   +   +E EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot
Match: Q9ZPX9 (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-28
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 4   KVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGN 63
           K+   ++D+LP+MAEK+  +  + ELC GF +L D E+ LIT ESL+RNS +LG+  M  
Sbjct: 17  KMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSK 76

Query: 64  EELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESE 113
           E+   M++EGDLDGDGALNQ EFCVLM RLSP++M+ +  WL+ AL  E
Sbjct: 77  EDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot
Match: Q2TBN3 (Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   NFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEELL 67
           NF D L +M +K+      +E+   F++  D E G I+ ++LKR +  LG  ++ +EEL 
Sbjct: 85  NFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLSDEELQ 144

Query: 68  SMMKEGDLDGDGALNQMEFCVLMFRLS 95
            M+ E D DGDG +N+ EF  +M + S
Sbjct: 145 EMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot
Match: Q9R1K9 (Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-08
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   NFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEELL 67
           NF D L +M +K+      +E+   F++  D E G I+ ++LKR +  LG  ++ +EEL 
Sbjct: 85  NFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLTDEELQ 144

Query: 68  SMMKEGDLDGDGALNQMEFCVLMFRLS 95
            M+ E D DGDG +N+ EF  +M + S
Sbjct: 145 EMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL
Match: A0A0A0KCV2 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G120930 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MARKVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRD 60
           M++K GANFQDLLP+MAEKLGG+GLIKELCNGFEVLMDKEKG+ITLESL+RNSWLLGVRD
Sbjct: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRD 60

Query: 61  MGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           M  EELLSMM+EGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQ ALE+EF
Sbjct: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL
Match: A0A6J1JGE3 (calcium-binding protein PBP1-like OS=Cucurbita maxima OX=3661 GN=LOC111484150 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 6   GANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEE 65
           G  F DLLP+MAEKLGG+GLI ELCNGF++LMDKEKG+ITLESL+RNS LLG+ DMG EE
Sbjct: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71

Query: 66  LLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           L+SMM+EGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL
Match: A0A6J1FW37 (calcium-binding protein PBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111449023 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 6   GANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEE 65
           G  F DLLP+MAEKLGG+GLI ELCNGF++LMDKEKG+ITLESL+RNS LLG+ DMG EE
Sbjct: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70

Query: 66  LLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           L+SMM+EGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 118

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL
Match: A0A6J1HZZ8 (calcium-binding protein PBP1-like OS=Cucurbita maxima OX=3661 GN=LOC111469641 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MARKVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRD 60
           MARK  A F DLLP+MAE+LGG+GLI ELCNGF++LMDKEKG+ITL+SL+ NS LLG+RD
Sbjct: 1   MARK-SAAFHDLLPVMAEQLGGEGLINELCNGFQLLMDKEKGVITLDSLRLNSSLLGLRD 60

Query: 61  MGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           MG  ELLSMM EGDLDGDGALNQMEFCVLMFRLSP+LMQHSLY LQHA   +F
Sbjct: 61  MGEAELLSMMTEGDLDGDGALNQMEFCVLMFRLSPELMQHSLYCLQHASHHQF 112

[Close]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL
Match: A0A2P5AVV6 (Parvalbumin OS=Trema orientale OX=63057 GN=TorRG33x02_339920 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 78/106 (73.58%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 7   ANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEEL 66
           ++F+DLLP+MAE+LGG+GLIKELC+GFE+LMDKE+GLITLESL+RN+ +LG++DM  +EL
Sbjct: 25  SDFEDLLPVMAERLGGEGLIKELCSGFELLMDKERGLITLESLRRNAAVLGLQDMREDEL 84

Query: 67  LSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESE 113
           +SM++EGDLDGDGALNQMEFCVLMFRLSPDLM+ S +WLQH L+ E
Sbjct: 85  VSMLREGDLDGDGALNQMEFCVLMFRLSPDLMEDSWFWLQHVLQEE 130

[Close]

BLAST of Lsi10G008490.1 vs. NCBI nr
Match: XP_038902367.1 (calcium-binding protein KRP1-like [Benincasa hispida])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MARKVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRD 60
           MARKVG+NFQDLLP+MAEKLGG+GLIKELCNGFEVLMDKEKGLITLESL+ NSWLLGVRD
Sbjct: 1   MARKVGSNFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGLITLESLRTNSWLLGVRD 60

Query: 61  MGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEFN 115
           M  EELLSMM+EGDLDGDGALNQMEFCVLMFRLSPDLMQHSL WLQ+ALE EFN
Sbjct: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLNWLQYALEREFN 114

[Close]

BLAST of Lsi10G008490.1 vs. NCBI nr
Match: XP_004140055.1 (calcium-binding protein KRP1 [Cucumis sativus] >KGN46674.1 hypothetical protein Csa_020739 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MARKVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRD 60
           M++K GANFQDLLP+MAEKLGG+GLIKELCNGFEVLMDKEKG+ITLESL+RNSWLLGVRD
Sbjct: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRD 60

Query: 61  MGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           M  EELLSMM+EGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQ ALE+EF
Sbjct: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]

BLAST of Lsi10G008490.1 vs. NCBI nr
Match: KAG6570861.1 (Calcium-binding protein KRP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 90/115 (78.26%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MARK--VGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGV 60
           MARK   G  F DLLP+MAEKLGG+GLI ELCNGF++LMDKEKG+ITLESL+RNS LLG+
Sbjct: 1   MARKGGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGL 60

Query: 61  RDMGNEELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
            DMG EEL+SMM+EGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 61  WDMGEEELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 115

[Close]

BLAST of Lsi10G008490.1 vs. NCBI nr
Match: XP_022944617.1 (calcium-binding protein PBP1-like [Cucurbita moschata] >KAG7010710.1 Calcium-binding protein PBP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 6   GANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEE 65
           G  F DLLP+MAEKLGG+GLI ELCNGF++LMDKEKG+ITLESL+RNS LLG+ DMG EE
Sbjct: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70

Query: 66  LLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           L+SMM+EGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 118

[Close]

BLAST of Lsi10G008490.1 vs. NCBI nr
Match: XP_022986403.1 (calcium-binding protein PBP1-like [Cucurbita maxima])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 6   GANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEE 65
           G  F DLLP+MAEKLGG+GLI ELCNGF++LMDKEKG+ITLESL+RNS LLG+ DMG EE
Sbjct: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71

Query: 66  LLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
           L+SMM+EGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119

[Close]

BLAST of Lsi10G008490.1 vs. TAIR 10
Match: AT4G27280.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 8   NFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRN-SWLLGVRDMGNEEL 67
           NF D LP MA  LGG+GLI ELCNGFE+LMD+EKG+IT ESL+RN + +LG+ D+ +E++
Sbjct: 18  NFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDV 77

Query: 68  LSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
             M+KEGD D DGALNQMEFCVLMFRLSPDLM+ S   +   +E EF
Sbjct: 78  RCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of Lsi10G008490.1 vs. TAIR 10
Match: AT5G54490.1 (pinoid-binding protein 1 )

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-31
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 9   FQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRN-SWLLGVRDMGNEELL 68
           FQD  P MA KLGG+GLI+E+C GFE+LMDK+KG+IT ESL+RN S +LG+ D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 69  SMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESEF 114
            M+ EGD D DGALNQMEFCVLMFRLSP+LM+ S   +   +E EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of Lsi10G008490.1 vs. TAIR 10
Match: AT2G46600.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 4   KVGANFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGN 63
           K+   ++D+LP+MAEK+  +  + ELC GF +L D E+ LIT ESL+RNS +LG+  M  
Sbjct: 17  KMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSK 76

Query: 64  EELLSMMKEGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQHALESE 113
           E+   M++EGDLDGDGALNQ EFCVLM RLSP++M+ +  WL+ AL  E
Sbjct: 77  EDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of Lsi10G008490.1 vs. TAIR 10
Match: AT4G14640.1 (calmodulin 8 )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 31/85 (36.47%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 9   FQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEELLS 68
           F + L LMA+KL      +EL   F+V    + G I+   L      LG + + +EE+  
Sbjct: 67  FAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEK-LTDEEVEQ 126

Query: 69  MMKEGDLDGDGALNQMEFCVLMFRL 94
           M+KE DLDGDG +N  EF  +M  +
Sbjct: 127 MIKEADLDGDGQVNYDEFVKMMINI 150

[Close]

BLAST of Lsi10G008490.1 vs. TAIR 10
Match: AT1G66410.1 (calmodulin 4 )

HSP 1 Score: 47.8 bits (112), Expect = 7.0e-06
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 8   NFQDLLPLMAEKLGGDGLIKELCNGFEVLMDKEKGLITLESLKRNSWLLGVRDMGNEELL 67
           +F + L LMA+K+      +EL   F V    + G I+   L+     LG + + +EE+ 
Sbjct: 65  DFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDEEVE 124

Query: 68  SMMKEGDLDGDGALNQMEFCVLM 91
            M++E D+DGDG +N  EF  +M
Sbjct: 125 EMIREADVDGDGQINYEEFVKIM 146

The following BLAST results are available for this feature:

BLAST of Lsi10G008490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81831	2.7e-31	63.55	Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1	[more]
Q9LSQ6	1.2e-29	60.38	Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1	[more]
Q9ZPX9	3.7e-28	53.21	Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2	[more]
Q2TBN3	2.5e-08	36.78	Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1	[more]
Q9R1K9	4.3e-08	36.78	Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 SV=1	[more]

BLAST of Lsi10G008490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCV2	5.5e-51	89.38	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G120930 PE=...	[more]
A0A6J1JGE3	6.1e-42	79.63	calcium-binding protein PBP1-like OS=Cucurbita maxima OX=3661 GN=LOC111484150 PE...	[more]
A0A6J1FW37	6.1e-42	79.63	calcium-binding protein PBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111449023 ...	[more]
A0A6J1HZZ8	1.5e-40	77.88	calcium-binding protein PBP1-like OS=Cucurbita maxima OX=3661 GN=LOC111469641 PE...	[more]
A0A2P5AVV6	2.8e-39	73.58	Parvalbumin OS=Trema orientale OX=63057 GN=TorRG33x02_339920 PE=4 SV=1	[more]

BLAST of Lsi10G008490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902367.1	1.8e-51	90.35	calcium-binding protein KRP1-like [Benincasa hispida]	[more]
XP_004140055.1	1.1e-50	89.38	calcium-binding protein KRP1 [Cucumis sativus] >KGN46674.1 hypothetical protein ...	[more]
KAG6570861.1	4.3e-42	78.26	Calcium-binding protein KRP1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022944617.1	1.3e-41	79.63	calcium-binding protein PBP1-like [Cucurbita moschata] >KAG7010710.1 Calcium-bin...	[more]
XP_022986403.1	1.3e-41	79.63	calcium-binding protein PBP1-like [Cucurbita maxima]	[more]

BLAST of Lsi10G008490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27280.1	1.9e-32	63.55	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	8.2e-31	60.38	pinoid-binding protein 1	[more]
AT2G46600.1	2.6e-29	53.21	Calcium-binding EF-hand family protein	[more]
AT4G14640.1	1.4e-06	36.47	calmodulin 8	[more]
AT1G66410.1	7.0e-06	33.73	calmodulin 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 65..93 e-value: 0.0017 score: 27.6
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 40..92 e-value: 5.4E-16 score: 58.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 61..96 score: 9.743292
None	No IPR available	GENE3D	1.10.238.10		coord: 6..114 e-value: 1.1E-19 score: 72.4
None	No IPR available	PANTHER	PTHR47319:SF8	CALCIUM-BINDING PROTEIN PBP1-LIKE	coord: 1..113
IPR044205	Calcium-binding protein KIC/PBP1/KRP1	PANTHER	PTHR47319	CALCIUM-BINDING PROTEIN KIC	coord: 1..113
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 74..86
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 8..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G008490	Lsi10G008490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G008490.1.exon.1	Lsi10G008490.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G008490.1.CDS.1	Lsi10G008490.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G008490.1	Lsi10G008490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding