Lsi09G018420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G018420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L38
Location	chr09: 27266629 .. 27270113 (+)
RNA-Seq Expression	Lsi09G018420
Synteny	Lsi09G018420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGGAGCTACGCTCGGCAGCCTCAGTTCTGCCACCAAAATGGTACCTCTCAAATTTCCGCTTTTGATTTCTTATGCTTGACTTGTTATCTGCCATGATTTAGCTTCTGTTCTATCTTGTTCAATGCTATGAGGGTGCATATCCTCATTAGATTACAACTCTCATATGTTCTATTCACACTGGAATTTGAGGCGTTCTGGAGTTTTTTTTTTTTTTTCGGGTTAAGGTCTATGCGGATTAAAGTAACTGTTTGATATGTGGATTTTCTTCTTCAAATTCTGTCATTGTTGTGTACACATCTCCCTCTCGTTTGCATATCTTATTGTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAAAAATAAGGCTAAATTTAAATTAAAAAAAAAAAATTGTTCTTGAACTTTGCACGTTGTGTCAAAAATACTTTATTGTTGTCCTTCTATGACTCAACCTGCTTCTCTATTTTATTTATTTTTCTTTCGTCTTATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTGTTCCATATTTCAATATGCAGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTCACTTTTTTCATAACTAACATTGCGATGGTATATTGGAAGTGGCTATAACGATAGGTTGGTAATGTGTTTATCAATGGTTAGATAGATTACAAATTGTTTCATAATTTGTTTGTGACGACTATAAATTTCCAAGGAAGACGCTAAAAACACTCATGTGTGCTTTTATCATCTGTTTTTGGCTTAAATGAACGTTAAATCTCCTAAAACACAGCTTCTCTTTTATTAACCTCCCTATAAGTACAAATAGAATCTCTCCCACAAATCTACCGCATGTGATTTTTTTCTCTTCAAGTTCATATTTGCTTCTTGCTTCCTTGCATCGGTCTCTTTACAAAATATTGTGTATTTCTTTAGCACTGCCCGCATCGCTATCTTCTTTAACTATAAGGATAAATTGCTTACAATGAATCCCCTTGTAGATACTTCGGCAGGTCTGTTTTTCCCCCTTCTTTGGGGAATTTGAATTGAATCTTGAGAGGAATTTTAGACTTTTTAGGGGGTTGAGAGATCTGGGTAGGTTATTAGCATCTTGAGGCTTCAGTCGTCAAGCTTGGCTTCTTTTGTTTGGATTGGTGTTCATTCTAGTAGGTGTTCGGATTCCTTTTCTTGAACTTCCGGTGTATTCTTTCACTATCTTTGAAAGCGGGGTTTCTTATTATAATAGCAGTTTGGTCTTGTATTTTAAGACTTACACTTTACTTTTGTCTTAATTTAGTCCTCACACTTTCAATAAATTTTTAAGTTTTAGTCTATGTTAGTTTATGGTCAACTTTTTTCAAAAAGTATAATTAGATCTCTACTATCCTTCATACCATCAAATTTGTGGGAAAAATTTGGCATTCATTTTTATCAAATAGAAATTAGTGAAAAATACACTTTTGGTCCCTAAGGTTTGAACATTGTGCCTATTTGGTCCCGAACACTTTCGTCCTTGAAGTTTGAAAAATAGTTCTGAATGGTCTCTAAGCACATTTTGACTATTAGGTGGGACTTGAATAAGTGATTGTATCTTGTTGACTTGGAGGCTTTATTAATTTAATATTCAATTTAGGATTATGTGGTCTCTCATCTCTAACTATTGTGCCGACCACCATTGTCTTCGCCGATTTCCTACACTCACCTCCCGCAACTGCTGCCTCACTCATCACTTTCCTCTTTTGCTGTTCAATATTGACTGCCCTTGCCCATATTTTTCTTTTAGTTTTGAAGTTTAATTCTCTTCTCTTTAGATAACAAAAACACCAAAAAAGAAAAATGAGAGAAACCCAACTCAACATATAAGCAAAAACCCCCTATCCCACGTTTTTGCTTCCCCTGTTCATTTTGATTGTGTGTTATGAAAATTTTATACTCTAGTTTTTGGTATGTATATATGCATTATGAAATTATTGCAAAAACTTTACTTAGGAGTATAAATATAAAAAATTGAAGTTATATAAATGCATTTTAGTCTACTCATTTTCAAACCATCTTCTTCCATGATTTCCACACTGGTCTCCATGAGAGGCATTGCGGCAAGAAGAGGAAAAAAAATATAGGCCACACATAACCCTAATTTTTCATATTAATTAATAAAATTTTCCAGTAAAAAAGAGACAATCACTCACTTAAGCACCACATCATCTTACCCAAGAAATTACTGTAATTATTTTACAAGGTTCGATATTAATAAAATTAGCCTCAAACTAACATAAAATGACTAATTTTGAAATTTATGAAAGAATGCTGACTAAAATTAGATATTTGAGAGTTCTAAGACCAAATTTGTATGATTACATGATGAAAATGGTATTTTAACTTCAAACATAATTGGTGCCTATGATGTTCTGCTAAGATGAGGAGGAATTTGGTGTGAACATTGACTGACATTTATTTTTCCACGTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTTTTTTATGAGGTTTTTTTCCCCAACTATTTAGAATATATTTAAATTGGATTTGAGCTTGTAGTAATCCATATTTACCTTCGTTTTCCAGTGGATTGGTTGAAATTTAGAATGGTTACGATGAGTTTATGGTGTGGGTTCATGTTTCATTAAATTTATCACTACTCCCGCAGTGTTTCTAACTCAAGGTGGATTTGATAAGCACAGCCTTTTTGATATGGGGCAGTAAACAGTTTAGTTTCTTTTTATTTTTATTTTTATTTTTTTGTCATTTAGTTTGAAATTCCAACATGTGGGATG

mRNA sequence

ATCCGGAGCTACGCTCGGCAGCCTCAGTTCTGCCACCAAAATGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTGTTCGGATTCCTTTTCTTGAACTTCCGGTGTATTCTTTCACTATCTTTGAAAGCGGGATAACAAAAACACCAAAAAAGAAAAATGAGAGAAACCCAACTCAACATATAAGCAAAAACCCCCTATCCCACTTTGAAATTCCAACATGTGGGATG

Coding sequence (CDS)

ATGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTGTTCGGATTCCTTTTCTTGAACTTCCGGTGTATTCTTTCACTATCTTTGAAAGCGGGATAACAAAAACACCAAAAAAGAAAAATGAGAGAAACCCAACTCAACATATAAGCAAAAACCCCCTATCCCACTTTGAAATTCCAACATGTGGGATG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGVRIPFLELPVYSFTIFESGITKTPKKKNERNPTQHISKNPLSHFEIPTCGM

Homology

[Close]

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGVRIPFLE 71
          PPG+ +  L+
Sbjct: 61 PPGLAVKELK 70

[Close]

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGVRIPFLE 71
          PPG+ +  L+
Sbjct: 61 PPGLAVKELK 70

[Close]

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGVRIPFLE 71
          PPG+ +  L+
Sbjct: 61 PPGLAVKELK 70

[Close]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL
Match: A0A7J6ENF3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020996 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.3e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG++I
Sbjct: 61 PPGLKI 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL
Match: A0A3S3NNB0 (60S ribosomal protein L38-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00012300 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.3e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLNV 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL
Match: A0A6J1I9U6 (60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.5e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL
Match: A0A7I8IQP0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.5e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL
Match: A0A7I8IHZ9 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03003959 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.5e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. NCBI nr
Match: KAF4348608.1 (hypothetical protein G4B88_024086 [Cannabis sativa] >KAF4349413.1 hypothetical protein F8388_020996 [Cannabis sativa] >KAF4359826.1 hypothetical protein G4B88_020347 [Cannabis sativa])

HSP 1 Score: 131.0 bits (328), Expect = 6.7e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG++I
Sbjct: 61 PPGLKI 66

[Close]

BLAST of Lsi09G018420 vs. NCBI nr
Match: RWR71936.1 (60S ribosomal protein L38-like protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLNV 66

[Close]

BLAST of Lsi09G018420 vs. NCBI nr
Match: XP_008790582.1 (60S ribosomal protein L38 [Phoenix dactylifera])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLNV 66

[Close]

BLAST of Lsi09G018420 vs. NCBI nr
Match: XP_038906668.1 (60S ribosomal protein L38-like [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGVRI 67
           PPG+ +
Sbjct: 119 PPGLSV 124

[Close]

BLAST of Lsi09G018420 vs. NCBI nr
Match: QCG74680.1 (60S ribosomal protein L38-like protein, partial [Coffea canephora])

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 17 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 76

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 77 PPGLSV 82

[Close]

BLAST of Lsi09G018420 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018420 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGVRI 67
          PPG+ +
Sbjct: 61 PPGLSV 66

The following BLAST results are available for this feature:

BLAST of Lsi09G018420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	2.2e-28	90.91	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	2.7e-26	86.36	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	1.5e-24	78.57	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q32PB9	2.3e-22	72.86	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
P63173	2.3e-22	72.86	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

BLAST of Lsi09G018420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6ENF3	3.3e-27	96.97	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020996 PE=3 SV=1	[more]
A0A3S3NNB0	7.3e-27	95.45	60S ribosomal protein L38-like protein OS=Cinnamomum micranthum f. kanehirae OX=...	[more]
A0A6J1I9U6	9.5e-27	95.45	60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1	[more]
A0A7I8IQP0	9.5e-27	95.45	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV...	[more]
A0A7I8IHZ9	9.5e-27	95.45	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03003959 PE=3 SV...	[more]

BLAST of Lsi09G018420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4348608.1	6.7e-27	96.97	hypothetical protein G4B88_024086 [Cannabis sativa] >KAF4349413.1 hypothetical p...	[more]
RWR71936.1	1.5e-26	95.45	60S ribosomal protein L38-like protein [Cinnamomum micranthum f. kanehirae]	[more]
XP_008790582.1	1.5e-26	95.45	60S ribosomal protein L38 [Phoenix dactylifera]	[more]
XP_038906668.1	2.0e-26	95.45	60S ribosomal protein L38-like [Benincasa hispida]	[more]
QCG74680.1	2.0e-26	95.45	60S ribosomal protein L38-like protein, partial [Coffea canephora]	[more]

BLAST of Lsi09G018420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	1.5e-29	90.91	Ribosomal L38e protein family	[more]
AT3G59540.1	1.5e-29	90.91	Ribosomal L38e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..65 e-value: 1.7E-32 score: 111.4
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 1..66
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 1..68 e-value: 2.7E-34 score: 119.1
None	No IPR available	PANTHER	PTHR10965:SF18	SUBFAMILY NOT NAMED	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018420.1	Lsi09G018420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome