Lsi09G017740.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G017740.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosome biogenesis NEP1-like protein
Locationchr09: 26494253 .. 26495163 (+)
Sequence length738
RNA-Seq ExpressionLsi09G017740.1
SyntenyLsi09G017740.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGTTAATAAGCAAAAAAAACCGTTACATTATATGTAATTAATTAATTAATTAATTATAATGTTGGTGGATGCATACACAGGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGTCAACGCCTTTCCCTTTTTTAATTATTCAAAATGAAGTGCATATTTTGAGTTGAAAATTAGGAATACTAATGCATGCATGGATGGACTTGCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGATGAAACATCCTCCCAACTATTTATTTATTTATTTATTTATTTATTTATTTTCTTCGTGATATGATATGTGTATATATATATATATATATTTAAATATTATGGGCCCTTCTGCTTTTCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTATAGTACTAGCTACTGCTAGGGAATGCGGTCCTCATTTGTTTAATTAATTTTCTTTTTCGTATAATATAATAAAAGCAATTTAATTGGATAACCCAAA

mRNA sequence

AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGATGAAACATCCTCCCAACTATTTATTTATTTATTTATTTATTTATTTATTTTCTTCGTGATATGATATGTGTATATATATATATATATATTTAAATATTATGGGCCCTTCTGCTTTTCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTATAGTACTAGCTACTGCTAGGGAATGCGGTCCTCATTTGTTTAATTAATTTTCTTTTTCGTATAATATAATAAAAGCAATTTAATTGGATAACCCAAA

Coding sequence (CDS)

AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGA

Protein sequence

KYLYMQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Homology
[Close]
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match: A0A1S3CBE5 (uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.6e-67
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0 

Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIV 64
           + NK+WKSMLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIV
Sbjct: 8   LANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIV 67

Query: 65  MGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 124
           MGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKV
Sbjct: 68  MGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKV 127

Query: 125 AHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           AHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 128 AHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match: A0A0A0KC39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.5e-65
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 0 

Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPI 64
           + NK+WKSMLVETRIQG R F+SSTT P A NI+NAS  SSSS GGS  SEYMKGEYAPI
Sbjct: 8   LANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPI 67

Query: 65  YIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 124
           YIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFL
Sbjct: 68  YIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFL 127

Query: 125 RKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           RKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 128 RKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match: A0A5D3DLZ1 (Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001820 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 132/151 (87.42%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 13  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVA 72
           MLV TRIQG R FASSTTAP AN   ++SSSSSKGGS +SEYMKGEYAPIYIVMGMVAV 
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAVV 60

Query: 73  LSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNP 132
           +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ 
Sbjct: 61  VSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDT 120

Query: 133 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match: E5GB52 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.1e-63
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 13  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVAL 72
           MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 73  SIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPK 132
           SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ K
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 133 TLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           TLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match: A0A6J1D5I0 (uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017496 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 126/159 (79.25%), Postives = 136/159 (85.53%), Query Frame = 0 

Query: 4   YMQNKLWKSMLV--ETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPI 63
           + + KLWKSMLV   +RI+GKR FASSTTA         SSSS   SSKSEYMKGEYAPI
Sbjct: 3   FRRTKLWKSMLVGIPSRIEGKRCFASSTTA---------SSSS---SSKSEYMKGEYAPI 62

Query: 64  YIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 123
           YIVMGMV VA++IGTHTAKQQLLHSPVV L+KKKRESIPEV+DPDTVITSADKF+NKSFL
Sbjct: 63  YIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFL 122

Query: 124 RKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPT 161
           RKVAHIQD+ KTL DP HPDPFTRPRNAETLKTAGVDPT
Sbjct: 123 RKVAHIQDHNKTLRDPQHPDPFTRPRNAETLKTAGVDPT 149

[Close]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match: XP_008459927.1 (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 9.4e-67
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0 

Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIV 64
           + NK+WKSMLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIV
Sbjct: 8   LANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIV 67

Query: 65  MGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 124
           MGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKV
Sbjct: 68  MGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKV 127

Query: 125 AHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           AHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 128 AHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match: XP_004140656.2 (uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical protein Csa_005593 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 0 

Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPI 64
           + NK+WKSMLVETRIQG R F+SSTT P A NI+NAS  SSSS GGS  SEYMKGEYAPI
Sbjct: 8   LANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPI 67

Query: 65  YIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 124
           YIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFL
Sbjct: 68  YIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFL 127

Query: 125 RKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           RKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 128 RKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match: XP_038906484.1 (uncharacterized protein LOC120092464 [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 132/164 (80.49%), Postives = 147/164 (89.63%), Query Frame = 0 

Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPAN------IENASSSSSKGGSSKSEYMKGEY 64
           + NK+WK+MLV +RIQGKR  ASSTTAP AN        ++SSSSSKGGSS SEYMKGEY
Sbjct: 8   LTNKVWKAMLVGSRIQGKRRLASSTTAPAANNIQKASSSSSSSSSSKGGSSSSEYMKGEY 67

Query: 65  APIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINK 124
           APIYIV+GMVAVA+SIGTHTAKQQLLHSPVVN +KKKRESIPEV+DPDT+I SA+KFINK
Sbjct: 68  APIYIVVGMVAVAVSIGTHTAKQQLLHSPVVNFSKKKRESIPEVDDPDTIINSANKFINK 127

Query: 125 SFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           SFLRKVAHIQ++ KTLPDPVHP+PFTRPRNAETLKTAGVDPTRR
Sbjct: 128 SFLRKVAHIQEDTKTLPDPVHPNPFTRPRNAETLKTAGVDPTRR 171

[Close]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match: KAA0039866.1 (putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24635.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 132/151 (87.42%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 13  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVA 72
           MLV TRIQG R FASSTTAP AN   ++SSSSSKGGS +SEYMKGEYAPIYIVMGMVAV 
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAVV 60

Query: 73  LSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNP 132
           +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ 
Sbjct: 61  VSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDT 120

Query: 133 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match: ADN33694.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 251.1 bits (640), Expect = 6.3e-63
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 13  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVAL 72
           MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 73  SIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPK 132
           SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ K
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 133 TLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           TLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]
BLAST of Lsi09G017740.1 vs. TAIR 10
Match: AT1G63060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0 

Query: 56  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKF 115
           GE+AP+ I+ G V +A+ +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKF
Sbjct: 41  GEFAPVAIIGGFVGLAVLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVSSADKF 100

Query: 116 INKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKTAGVDP 160
           INKS+LRKV  IQD  K  L DP  P+PFT PRNAETL + GV P
Sbjct: 101 INKSWLRKVGQIQDKSKAILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]
BLAST of Lsi09G017740.1 vs. TAIR 10
Match: AT5G07330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 52/145 (35.86%), Postives = 89/145 (61.38%), Query Frame = 0 

Query: 19  IQGKRGFASSTTAPPANIENASSSSSKG--GSSKSEYMKGEYAPIYIVMGMVAVALSIGT 78
           +Q  R +  +TT P +   + +++   G   ++ +   KG++ P+Y+ +G+++++++ G 
Sbjct: 13  VQRLRTYTKATTVPRSKAYSTAATEYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFGV 72

Query: 79  HTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ--DNPKTL 138
           +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F N+S+ RK+AH+Q  D    +
Sbjct: 73  YTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDKQDVI 132

Query: 139 PDPVHPDPFTRPRNAETLKTAGVDP 160
            DP+  D F     A TLK  GVDP
Sbjct: 133 SDPIRKDQFAHKPRALTLKDVGVDP 157

The following BLAST results are available for this feature:
BLAST of Lsi09G017740.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G017740.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CBE54.6e-6786.08uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=... [more]
A0A0A0KC399.5e-6583.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1[more]
A0A5D3DLZ12.3e-6387.42Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=11... [more]
E5GB523.1e-6387.33Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A6J1D5I01.2e-5679.25uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of Lsi09G017740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459927.19.4e-6786.08PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo][more]
XP_004140656.22.0e-6483.85uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical ... [more]
XP_038906484.15.7e-6480.49uncharacterized protein LOC120092464 [Benincasa hispida][more]
KAA0039866.14.8e-6387.42putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24... [more]
ADN33694.16.3e-6387.33hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of Lsi09G017740.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G63060.11.7e-2652.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G07330.11.2e-2235.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..51
NoneNo IPR availablePANTHERPTHR33919:SF9RIBOSOME BIOGENESIS NEP1-LIKE PROTEINcoord: 8..160
NoneNo IPR availablePANTHERPTHR33919OS09G0127700 PROTEINcoord: 8..160

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi09G017740Lsi09G017740gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G017740.1.exon.1Lsi09G017740.1.exon.1exon
Lsi09G017740.1.exon.2Lsi09G017740.1.exon.2exon
Lsi09G017740.1.exon.3Lsi09G017740.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G017740.1.CDS.1Lsi09G017740.1.CDS.1CDS
Lsi09G017740.1.CDS.2Lsi09G017740.1.CDS.2CDS
Lsi09G017740.1.CDS.3Lsi09G017740.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G017740.1.three_prime_UTR.1Lsi09G017740.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi09G017740.1Lsi09G017740.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane