Lsi09G007720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G007720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 8788958 .. 8789559 (-)
RNA-Seq ExpressionLsi09G007720
SyntenyLsi09G007720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTACATCTCAACTCACACATTAAAGTATGCAACTCTCTACCAAAATTATTCTTTACGTTTTCTTAAAAGAAAATTTATTCCTCGTTAATCATACCCTAAATATAAATCGTAATCATCACTTGATCTTCTTAGGAGAAAGCTTCGATTTAATCTCTTCCACCTCATCGTCCCCAATCTGAAAAGCCCGAGCAAGGACGGCGTCATCGACCGGAGGGGAGGAGGAAAACAAGGCGGCGGCGACCGACAAAGTTCCGGGTAGCTGGCTGTTGAAGGCGGAGATAACAGAAGCAGGTTTATCCTTGTTGTTCTGCTGGAAATGGAGTAGGCCCCTGGGGAAGACAAAGATTTCGCCTTTTTTTATGGTTTTGGAAATCAGTTTGTTGGCGGTGGTTATGAATCCGACGTCGAGTTCGCCGTCGAGGACGAAGATGATCTCGGTGCCGCGTGGGTGGATGTGTGGTGGATTTAGCCCACCGTCAGGCGAGAAGTCGATTCGGGCGAGGGAAACGCCGTAGGTGTTGAGGCCGGGGATTTGGTTGACATTGGCTGGCGTGACAGTGGATCCAACGGAGTTGTTGATGGCGGCTGGGTTTGCTAG

mRNA sequence

ATGACCCGAGCAAGGACGGCGTCATCGACCGGAGGGGAGGAGGAAAACAAGGCGGCGGCGACCGACAAAGTTCCGGGTAGCTGGCTGTTGAAGGCGGAGATAACAGAAGCAGGTTTATCCTTGTTGTTCTGCTGGAAATGGAGTAGGCCCCTGGGGAAGACAAAGATTTCGCCTTTTTTTATGTTTGTTGGCGGTGGTTATGAATCCGACGTCGAGTTCGCCGTCGAGGACGAAGATGATCTCGGTGCCGCGTGGGTGGATCCCACCGTCAGGCGAGAAGTCGATTCGGGCGAGGGAAACGCCGTAGGTGTTGAGGCCGGGGATTTGGTTGACATTGGCTGGCGTGACAGTGGATCCAACGGAGTTGTTGATGGCGGCTGGGTTTGCTAG

Coding sequence (CDS)

ATGACCCGAGCAAGGACGGCGTCATCGACCGGAGGGGAGGAGGAAAACAAGGCGGCGGCGACCGACAAAGTTCCGGGTAGCTGGCTGTTGAAGGCGGAGATAACAGAAGCAGGTTTATCCTTGTTGTTCTGCTGGAAATGGAGTAGGCCCCTGGGGAAGACAAAGATTTCGCCTTTTTTTATGTTTGTTGGCGGTGGTTATGAATCCGACGTCGAGTTCGCCGTCGAGGACGAAGATGATCTCGGTGCCGCGTGGGTGGATCCCACCGTCAGGCGAGAAGTCGATTCGGGCGAGGGAAACGCCGTAGGTGTTGAGGCCGGGGATTTGGTTGACATTGGCTGGCGTGACAGTGGATCCAACGGAGTTGTTGATGGCGGCTGGGTTTGCTAG

Protein sequence

MTRARTASSTGGEEENKAAATDKVPGSWLLKAEITEAGLSLLFCWKWSRPLGKTKISPFFMFVGGGYESDVEFAVEDEDDLGAAWVDPTVRREVDSGEGNAVGVEAGDLVDIGWRDSGSNGVVDGGWVC
Homology
BLAST of Lsi09G007720 vs. ExPASy TrEMBL
Match: A0A4D8ZUB9 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_023151 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0

Query: 2   TRARTASSTG---GEEENKAAATDKVPGSWLLKAEITEAGLSLLFCWKWSRPLGKTKISP 61
           TR   A+++G   G   N A A   VPG WL K     A +   F WKW RP G T IS 
Sbjct: 6   TRKALANTSGLILGSNPNTALAMVIVPGFWLPKLANATALVFPTFNWKWMRPCGMTDISG 65

Query: 62  FFMF---------VG--GGYESDVEFAVEDED-----DLGAAWVDPTVRREVDSGEGNAV 115
             +F         +G  G  E DVE A   E+      +G  WVDP +R +V++  GNA 
Sbjct: 66  VQIFGKELVLLGGIGRVGSDEPDVESAFHQEEGFGGTGVGVGWVDP-IRGKVEASHGNAE 125

BLAST of Lsi09G007720 vs. ExPASy TrEMBL
Match: A0A0A9NYZ3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-05
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 20 ATDKVPGSWLLKAEITEAGLSLLFCWKWSRPLGKTKISPFFM 62
          A D VPGSWLLKAE+T AG S LF WK +RP G TK SP  M
Sbjct: 2  ARDCVPGSWLLKAEMTAAGASPLFFWKCTRPRGNTKTSPAVM 43

BLAST of Lsi09G007720 vs. ExPASy TrEMBL
Match: A0A444C6X6 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00056938 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 63  VGGGYESDVEFAVEDEDDLGAAWVDPTVRR------EVDSGEGNAVGVEAGDLVDIGWRD 122
           VGGG E+ VE AVE EDDLG A V   VRR       VD+G G+A GVEA DL+ +G R 
Sbjct: 26  VGGGDEAHVEGAVEHEDDLGGAGVG--VRRVQPAGGVVDAGHGHAQGVEARDLLHVGGRH 85

Query: 123 SGSNGVVDG 126
            G++G V G
Sbjct: 86  QGAHGGVGG 92

BLAST of Lsi09G007720 vs. NCBI nr
Match: KAG6401813.1 (hypothetical protein SASPL_138680 [Salvia splendens])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0

Query: 2   TRARTASSTG---GEEENKAAATDKVPGSWLLKAEITEAGLSLLFCWKWSRPLGKTKISP 61
           TR   A+++G   G   N A A   VPG WL K     A +   F WKW RP G T IS 
Sbjct: 6   TRKALANTSGLILGSNPNTALAMVIVPGFWLPKLANATALVFPTFNWKWMRPCGMTDISG 65

Query: 62  FFMF---------VG--GGYESDVEFAVEDED-----DLGAAWVDPTVRREVDSGEGNAV 115
             +F         +G  G  E DVE A   E+      +G  WVDP +R +V++  GNA 
Sbjct: 66  VQIFGKELVLLGGIGRVGSDEPDVESAFHQEEGFGGTGVGVGWVDP-IRGKVEASHGNAE 125

BLAST of Lsi09G007720 vs. NCBI nr
Match: RWV81621.1 (hypothetical protein GW17_00056938, partial [Ensete ventricosum])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 63  VGGGYESDVEFAVEDEDDLGAAWVDPTVRR------EVDSGEGNAVGVEAGDLVDIGWRD 122
           VGGG E+ VE AVE EDDLG A V   VRR       VD+G G+A GVEA DL+ +G R 
Sbjct: 26  VGGGDEAHVEGAVEHEDDLGGAGVG--VRRVQPAGGVVDAGHGHAQGVEARDLLHVGGRH 85

Query: 123 SGSNGVVDG 126
            G++G V G
Sbjct: 86  QGAHGGVGG 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4D8ZUB98.5e-0838.64Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_023151 PE=4 SV=1[more]
A0A0A9NYZ35.2e-0566.67Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A444C6X62.0e-0453.62Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0005693... [more]
Match NameE-valueIdentityDescription
KAG6401813.11.8e-0738.64hypothetical protein SASPL_138680 [Salvia splendens][more]
RWV81621.14.1e-0453.62hypothetical protein GW17_00056938, partial [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G007720.1Lsi09G007720.1mRNA