Lsi05G018750.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTAGGTTTCACTCTCGTACTCCCTCTCCATTATTCTCAATTTTTTTCGTTTTGCTTTGATTCTCCGCCAAATATTTACGTGTCTGTGCTACCATTATCTCACCATTTGGACTTCTTCTACACTGGTTCACTTGAGAATGATTGCGTGCTGCTGTGCATCAATTTTTTCAGTTTGTGTTCTGGATGGTTAAACTCTCGAATTTGTTGTTGGCTGTGATCGTGCAAACTCTAATTTTCGCGGCGATTCTCTATGCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTTATTTCATTTTCTAGGGATGCTATTTCCATCCAATTTAGGTCAATTGATGAAGAGGAAGCAAACTTAAATGTATTATTGATCGGATGATAATCTTAAAAACAAAATAGGGTTTACCAGGGTATTAGTTGATAGAGCGCTCGTGAGAGTTCTTAGAGTGGCTATTCTAACTATGGCAATGGTGGAAAAGGAACTTTTACTAGGATATTGAAGCCGAAAGCTCTTAATCCCCCGTTCCTTAGGGCCAAGTTCTTATTTAAAATATCAAAGTAGGAAAGAATGTTAGATGTTTAATGCAGAAGCCTCGAGCTGCAACTTAAGGAAAGATTGTTAACGGAAAGCATGCATAACTGGTAATGGCTGATAAATCAGGTGTAAAGTGAAATTTTAATTTGAATTTGTAAATGAGTACTATCGTTATTGATCCTGATAAAGTGTAGCTTAATCTTTGGTGTGTTATAAATCATCCAATGAGAAGTTGGTGTTTAGAATACTAATTTTGTAGATTTTGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAAAGAAACTCTCTTTTCCAAATGCTATAGGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATGTTCTTTTCTTAGTTATCACATGAAATTGGAATGGAGGAACATTTCATCGTGTGTGGTACTGTTACTGGAAGCATACACTCACTATTTATGGGAATTTGACTTAAACTGAGATGATGGTACTAACTAACCAAGGTTGCAATTGCTCTGATTTGACTAGTTACTTAACTTGTTCTGTTTTTTGCCTCTTTGGAGTCTGCTCGTTTGCTTGTGACGTTAATGGATCAAGGAAATTTAAACAATATCCTCATCTCATTTGGACATAATTGGATAACCAGTGTGTCATTGAGTTAGTTATGTGCTCAATCTTAAAGGAATGTGTTAAAATATGATTTTGGTCCTCACAAGAAGTTCTATTTTGATCTTTCAAATTTTAGTAATTTCTATATAAGATATTCTATCCTAGTTAAAATCTGTAACGAAGAAGTGACTGGACTAATTTTCTGATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTCCATGTGATAACCTTTTTTTAGTTATATGTTGATCTGCAACAATATAGAATGCCATTTATTTTTTGTATGCAAGTCTTTGACTCAGATTTTAATGATAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAACATAAAAACTTTTTGGAACTTTGGGTTTTAACTTCAAGAATTAAAATTACTCTATGACCTGGAAGATACATGGCATATAAGGTGAGAAGTATATGTGGTTCATGATACTATGGAAACTTTAAAACCCTCTTCCTGTGTATTCCATAACATTTATGAATCCTATCTGGGTTTAGTAGATATAGAAATGTTCCATAGGCTGTCATTTAATTCCTTGGTTAGTAGAGTAGCATCATGCACCAACTCTTAATAAGACATTGCCTCGTAACGCGACTGAGATCTGTCTCCTTTACAGCGGGAAGATCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTGTTTCTTGATGTTGAAGTTATGTAAGTTTAATATACAATCTACACACGTTTATTAACCTTCTTGTAGCAGTAGATTTATCTGGTGCCTCATTGAGACAATGACTCGGCATGTATTGCCCACTTACTATCATTCGTCTATTAATAAAAGATGCATACCATCTTTATGTTCAATTATCTCCATGTTGATCAATTTTCATTCTTAAAGTGTAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGTATTTACCTTTTTTAAGAGGGCGTACGTTAAAAGCTCCGATGTTATATGATAGTTCTATGATATACAATGATTTCTAACTTTTAAGTTGAAAATACAATGTTTTATTCGATTTGATACTTTTTTAAAAAAGGGTTTAAAATTCAAATCTCCCAACCAATATATGAAGAAATGACTGATATTGATTTGAGTCTTATTTGATAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC ATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAA MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNIDPPFDLNSAGYNHD Homology
BLAST of Lsi05G018750.1 vs. ExPASy Swiss-Prot
Match: P38824 (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX23 PE=1 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 9.6e-04 Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22 Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22 Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22 Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22 Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21 Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida]) HSP 1 Score: 117.1 bits (292), Expect = 6.8e-23 Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia]) HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22 Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa]) HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22 Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 114.0 bits (284), Expect = 5.7e-22 Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus]) HSP 1 Score: 113.6 bits (283), Expect = 7.5e-22 Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) ) HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17 Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0
BLAST of Lsi05G018750.1 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) ) HSP 1 Score: 84.7 bits (208), Expect = 3.5e-17 Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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