Lsi04G013550 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAGAAAAAACAACGTATTTTAATTTTTTTGGCCATTGGATGTAGGAGAGAGGAGCCACAATTTTTTTTATTGAGTAGTTATTAAAAATATGCAAATGATTGAATTCACATCTAACGATTTGTCGGCTCACAATTATTAAGAGACAGTTACATTATGGTGATCTTATTAACCAAAGCCTTCGAATCATTGGATCTGGACTGAGTTTGGGCTATCAATTTTTGAATCCGCCCAATGATGAGAGCGACCAACACTAGTTAATGACATGAATTTCAACAATTACAAGTACATTAATTAGGTTTTCAATTCAAAATGTTTTTGCAATTTTGCAATAGTGTCATTTATTTGATTTTACAACTTAAGAAGGCTATTTTCCTTGAAAAAACTATTTCGAGGCATATAACACGTGGCGCAAAGTAAATGCATCCATCACATCACCCCAATCTTTCTTTTGAAAGAAGGCAAATACATAGAATCCATTGGCGCGGAAGGAGGTTCAAATTAAGAGAGCGCGAAAATCCTAGCAGAGAGAGAAGATGGGGTTCGATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATATATCCTGAGAGCGTAAGATCAACACGATCTTTTTCTTTTTCTTCTTCTTCTACTCGTTGATTGAATGAAGGCACTAATTAGATTAAGGAGGAAGTTTTAGGGCTTGAAATGAATGTAGAATTGTTTACGTCTCTCTTTCGTGTTAGTATTTCACAGTTCTAGTACCAGATCTTTGAGCTTAATGTATAATTACTTCATTCTACAGCGTGAGAGCATCATAGGCTTTCTCTATCTTCTTAGCATCATAGGCTTTCTCTATCTTCTTAATTGAGGCACCGTTTGGTTTGAGGATGGAGTTGAAGATGTGGAGCTCTATGTTTGAACTATTTTGTTCTTTCTTTGCTGTTATTTCACTGTACTAACACAAGATCATGAGCTTAATGTAGAATTATTCAATTCGACAGCGTAGGAACAAGTAATCTATCATGACAGAGTAAGAGCAACATATGTTTTTCTTCTTCTTCTAATTTTTCTTCTGAGTGGAGGCACTATTTGGATTGAGGAGGACATTCGAGTTATTGAGCTTAATGAAGATTTATTTCATTATCTTTTGGCTATTGGCATTTCACAAAGATCTTCAGCTGCTCATGAGCTAAACGTAGAATTATTTCGTTCTACAGTGTAAGAGCAAGGAATCTATCACGACAGGGTTGGAGCAACAATTTTTTTTTTAATTTTTTGTCGAGGCACTATTTGGTTGGAGGAGGAAGTAGTAGCTAGATTTTGCGCTTAATGAAGAGTGATTTCATTCTTCTATTAGAACCGCAGTACTATTGCAAGATTTTGAGGTTATCGTAGAATTGTGAATTGTTCCCTTCTCTCTTGCCAGTCAGTTTATTTCATACTACTAACCAACAGTATGTTGTGGTTATTGATTTTAAAAGGTTCGTGTCACAGAATAAATATTGTTTGTTCTGAGTTTGGATTTCGTAATTTTCAGGTCGAAGTTTTTGGAAAATTTGTTCACCCACACTTTCTTCATTTTCGAAATTCTGATTCTAGTAAGCTTTTTTATGCTTGGTAACACGTCGGATTATTGCTGTTTGTTTCTCTATAATGTATGCAACTATGTGGCAGTGAAAATGGATTCAAGCACACTTTATGATAAAGATTGTTCGGTCTTTGTTTGACGGTTGAGACTAGGAATTCTCTTAGAACATGTAATGGGATGGGGCTTAAATATGTCGTACAAAATATACGTCGTTGCTGCACAAAGTTAGCCACAGATTAATGTGGAATTCGGTCTCATATTTTCCTCCATATTCTTTCTAGAAAATACAAACACGAATCTGTTGTTGCTCAAGTGGTGGTTTTCATTCAAGATTTTGTAAATTGTTTACAGGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGATGGCCAAACAGGTACTTTTCTTCATTTACTTTCTCCAGAAAAGTATTGACTAAAGGAAACATACGCGTTTAAATTGTTAGATCATGCTCTATATATAAAGTTTTTTTCCCCTCAAGTATTAGGTCGGCAACTCTATTTCACTTAGATTCAATGTGATGAAATGTTGATATATTATATCTAGAAAAATGATAATATGAAGTTTGGGAATTTGATGTCTGATGAAAATAGGATGAATTGTATTTGGTGGCCGGTGGGTGGAAATGTGATTTAGATTTTTATTATATATAAGTTAAAATCTAATGGTATGCTTAATAATATTTACATCGAGAATAATTTGTTTAACGTGCACACTGAATTCAAAATTATTTCTAACAAATAATTATAAATGAGACTACGGTTTCTTTTAATAACCACATTGTTTATAGTTTCTGGTTTTGAAATTTATGATTGTTCCTTCTCAATCTTTTTACCATAGTTTCACTTTCTTGGAGAAATATTTGATTTTTTTTTTTTTTTGAAACGGAAACTAGGAGAAATATTTGAATTCTGAGTCAAATTTCAAAAACAAAAACAAGTTTTCAAAATTGTATCTTTTAGTTTTCAAAATTTGGCTTGGTTATTGATAACATGGATAGATTGTGGATAACAAAACAAACAAACTTATAGGTGAAATAGTAGTGTTTATAAGTTTAATTTCTAAAAATTAAAACTAGGACTTCGTTTGATAACCAGTTGGTTTTAAATTTTTTGCTTTTGAAAATTAAGTTTATAAACATTACTCTTTCACATATAAGTTTCTTTGTTTTATTATTTACTTTCTAATATTGTTTTCAAAAAGCAACCCAAGTTTTGAAAAAATAGAACAGAATTTTAGTTAATGTATTGATAGTTGGTGCCTCTTTTACTCTTTTATCGGAGGACGAGGATTCAAAAAGACATTGGTAATTGGAGGAACGGCTTTGACAATTACACTTTTTTTTCTTGTTCTGGAACTGAAGTCGGTTGGACTTGATACCTTTTACTAATTTTTTTTTAGAAGGAATGACCCTGACTTGTACTGTATTATTCTTGATCTGGAACTGGGATTGAGTGATTGCAATACCTATTCTGCTAATTTATGCAACGATGATGTCCTGTTCAAATGCAGGATGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGATGATTCTGCATTTGTGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGTCAGTACTCGTGCAACGCATTGATTATTCATTTGGCAATAGCCTGAATTCCTTTACTATGCTTGTGCAAAAGATTGCAGCTTTTAGATTTCATGTCACCCTGTACTCATAGTCTTATCTTAAGTTTTTGGTGTACCTCTTCTTTGTGCCATTTCATTTTTCACTTAACATCTGTACAAAGCTAATACAAGGTTCTTATTTATTCAAAATTTTATTCTTCTTTAGCTATTAGAAATGTTAACGCAGTGAAGTGGACATTTTTGTCTCAAGTGCTCTATTATCTGCTTTATCGTGATTTAAAAGGTTGCAATTTCCAATTGGTGCGTATAGTATTTGTACCATTTGCCAGCAAGCAACCAATATTAAATATGCAAAAGGCTTTTCTTAGGATTTGATATCCACATTAGATGGTATTGTGGGTATTTCGATCTTTTGGATAAAGCTTACACAACCAAATGTCTCACCCTCTCCATGTAGAAGCGTCGTGTTTTTAAGTATTTGCAGAGTCATTGTTTAATGCTAAACCATTTCCTGAATTCCCTCCTGCAGATCACTGAAGAGTGGACAACACAAGTTCAATCAAAATTTGGTAAGGATTCTTTTCAAGCTTTCTACAGACATTCCGATGCAGATAAATTGTTTGTGCTTATTAGCAAATGGGCATGCATAGTTCGTTACTTGCTGCTTAATTAGTATTTACGATCTAAATTTAGAACCAAATCGAATTCCAACTTTCAACCTTCCCAGTAAAAAATCAAGTCACTACCACTCGAATCATAGATTATAGTTTTTTTCCCCTCAATATGGAGTGAAAGAATCAAACTTCTGATCTTGTAGGATGAAGGAATCAAATTTCTGATCTCGAAGTCGATAGTAAGCTTTATGTAGATTGAGCTATGCTCATGTTGGCATTGATTACCGTTATCCCCTATCCGTTCTGGCACTTAGTTAATGTTTAGACCTATCCCATCTTTTAAACTCTAGCCAATTTACGAAAATGTTAAAAAATATATATATATGTGATGACAACCCTAAAAAGTTCAATAATGGTTGCATTTGCTGCAATGTCGAAACTAAAGTTTGTTTCTCCTTTCTTACTTAACTTTTCGTTGTGTTTTTCTTAAAAATATGGGGATTATGAGTTTTTTTCTTTTCACCGATTATGAATGAAGATCAAACTATTGACTTTTAAGATGGTAATTAGAATCATCTGAAATTTTATTTTGGATATGTTCAAATGTGTTAATATTATATGTGTGTGCAAATTGTGTGTTGGCGCTAATGCAGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTTGCTATTCTCAGCCGTTGTGCAGGCATGA AAAAAAGAAAAAACAACGTATTTTAATTTTTTTGGCCATTGGATGTAGGAGAGAGGAGCCACAATTTTTTTTATTGAGTAGTTATTAAAAATATGCAAATGATTGAATTCACATCTAACGATTTGTCGGCTCACAATTATTAAGAGACAGTTACATTATGGTGATCTTATTAACCAAAGCCTTCGAATCATTGGATCTGGACTGAGTTTGGGCTATCAATTTTTGAATCCGCCCAATGATGAGAGCGACCAACACTAGTTAATGACATGAATTTCAACAATTACAAGTACATTAATTAGGTTTTCAATTCAAAATGTTTTTGCAATTTTGCAATAGTGTCATTTATTTGATTTTACAACTTAAGAAGGCTATTTTCCTTGAAAAAACTATTTCGAGGCATATAACACGTGGCGCAAAGTAAATGCATCCATCACATCACCCCAATCTTTCTTTTGAAAGAAGGCAAATACATAGAATCCATTGGCGCGGAAGGAGGTTCAAATTAAGAGAGCGCGAAAATCCTAGCAGAGAGAGAAGATGGGGTTCGATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATATATCCTGAGAGCGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGATGGCCAAACAGGATGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGATGATTCTGCATTTGTGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTTGCTATTCTCAGCCGTTGTGCAGGCATGA ATGGGGTTCGATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATATATCCTGAGAGCGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGATGGCCAAACAGGATGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGATGATTCTGCATTTGTGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTTGCTATTCTCAGCCGTTGTGCAGGCATGA MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQASMGVPFVSDLDDSAFVQFKQVFIVNVPWFAFCGEDGQEEADCNDVNKLLFSAVVQA Homology
BLAST of Lsi04G013550 vs. ExPASy Swiss-Prot
Match: Q8WVK7 (Spindle and kinetochore-associated protein 2 OS=Homo sapiens OX=9606 GN=SKA2 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04 Identity = 28/88 (31.82%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy Swiss-Prot
Match: Q4R8E8 (Spindle and kinetochore-associated protein 2 OS=Macaca fascicularis OX=9541 GN=SKA2 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04 Identity = 26/88 (29.55%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy Swiss-Prot
Match: Q2TBY0 (Spindle and kinetochore-associated protein 2 OS=Bos taurus OX=9913 GN=SKA2 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 6.6e-04 Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy TrEMBL
Match: A0A0A0L5I9 (Protein FAM33A OS=Cucumis sativus OX=3659 GN=Csa_4G651780 PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 3.8e-63 Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy TrEMBL
Match: A0A6J1CJF1 (Protein FAM33A OS=Momordica charantia OX=3673 GN=LOC111011710 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 5.0e-63 Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy TrEMBL
Match: A0A6J1F6V9 (Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 6.5e-63 Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy TrEMBL
Match: A0A6J1FBS9 (Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61 Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 0
BLAST of Lsi04G013550 vs. ExPASy TrEMBL
Match: A0A6J1IP41 (Protein FAM33A OS=Cucurbita maxima OX=3661 GN=LOC111477290 PE=3 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61 Identity = 128/158 (81.01%), Postives = 136/158 (86.08%), Query Frame = 0
BLAST of Lsi04G013550 vs. NCBI nr
Match: XP_038898183.1 (spindle and kinetochore-associated protein 2 [Benincasa hispida] >XP_038898184.1 spindle and kinetochore-associated protein 2 [Benincasa hispida]) HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65 Identity = 136/159 (85.53%), Postives = 141/159 (88.68%), Query Frame = 0
BLAST of Lsi04G013550 vs. NCBI nr
Match: KAG6591515.1 (hypothetical protein SDJN03_13861, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253.8 bits (647), Expect = 9.4e-64 Identity = 131/158 (82.91%), Postives = 138/158 (87.34%), Query Frame = 0
BLAST of Lsi04G013550 vs. NCBI nr
Match: XP_004145489.1 (spindle and kinetochore-associated protein 2 [Cucumis sativus] >KGN55411.1 hypothetical protein Csa_012758 [Cucumis sativus]) HSP 1 Score: 250.8 bits (639), Expect = 7.9e-63 Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 0
BLAST of Lsi04G013550 vs. NCBI nr
Match: XP_022141272.1 (spindle and kinetochore-associated protein 2 [Momordica charantia]) HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62 Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0
BLAST of Lsi04G013550 vs. NCBI nr
Match: XP_022935897.1 (spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita moschata]) HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62 Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0
BLAST of Lsi04G013550 vs. TAIR 10
Match: AT2G24970.1 (unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 147.9 bits (372), Expect = 6.7e-36 Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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