Lsi04G010300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G010300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 11790513 .. 11790740 (+)
RNA-Seq ExpressionLsi04G010300
SyntenyLsi04G010300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

mRNA sequence

ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Coding sequence (CDS)

ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Protein sequence

MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of Lsi04G010300 vs. ExPASy TrEMBL
Match: A0A0A0KQN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 1  MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDND 60
          +KMIRIK+LLLL L +FFV G GVCSSACRLPCHRVA+  AQ+HEE+GDGSLDDDSKDND
Sbjct: 7  IKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDND 66

Query: 61 PYRMYGDVPSPGVGH 76
          PYRMYGDVPSPGVGH
Sbjct: 67 PYRMYGDVPSPGVGH 81

[Close]
BLAST of Lsi04G010300 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_005780 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.6e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 1  MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDND 60
          +KMIRIK+LLLL L +FFV G GVCSSACRLPCHRVA+  AQ+HEE+GDGSLDDDSKDND
Sbjct: 7  IKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDND 66

Query: 61 PYRMYGDVPSPGVGH 76
          PYRMYGDVPSPGVGH
Sbjct: 67 PYRMYGDVPSPGVGH 81

[Close]
BLAST of Lsi04G010300 vs. NCBI nr
Match: KAG6599948.1 (hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-17
Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 3   MIRIKDLLLLFLFVF-FVLGAGVCSSACRLPCHRVAVVGAQKH-EEMGDGSLDDDSKDND 62
           +IRI+ LLLL L VF FVL A VC++ACR PC+ VAV  AQ+H E+M +G+LDD++KDND
Sbjct: 40  IIRIRALLLLALTVFVFVLAARVCNAACRPPCYGVAVTRAQEHDEDMEEGALDDETKDND 99

Query: 63  PYRMYGDVPSPGVGH 76
           PYRMYGDVPSPGVGH
Sbjct: 100 PYRMYGDVPSPGVGH 114

The following BLAST results are available for this feature:
BLAST of Lsi04G010300 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G010300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN41.3e-2784.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1[more]
BLAST of Lsi04G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50727.12.6e-2784.00hypothetical protein Csa_005780 [Cucumis sativus][more]
KAG6599948.13.2e-1769.33hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi04G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010300.1Lsi04G010300.1mRNA