Lsi04G003250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G003250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	chaperonin 60 beta
Location	chr04: 3316174 .. 3321444 (+)
RNA-Seq Expression	Lsi04G003250
Synteny	Lsi04G003250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAATCATAAATGACTCGTGAAATAGCCATTCCTACACAAATCTCAAAGGAAAAAAAAAGCCTTTACCGTTAAATGACGGACCCTGAATCGCGCCAAAATAACCCGTCCAGATATTTCCCGCTTGGTTATTCCATTTGCAGGCATATCTTCCTCCTTATCCACCAACCGAAATGTAATCCGCTATAGCAATTTATCTTCATCGTACACTTTTGATGCTTTTGTTCTGCGAATTGCAGAACCATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAGGTCAAAACCAAAACCAATGCCAAACAAACCGCCGTCTTCATTGCCTCCTGCGTTGAACCCCACCTCCAAATCTCCGCCCAAGGAACTTTACTTCAACCACGATGGCTCTACCTTTAAAAAACTTCAGGTTACGTCCTCGGACGAAGCACCTGTTTCTTTGCCCTAACGGTTTTGCTTCGTACGATGTTTGAACGGTTTGATTTTGTTGAACAGGTCGGAGTTAATTTGGTGGCGGAGCTGGTGGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATCGTCAACGACGGTGAAACTGTCCTGAAAGAGGTATTCCAACTTTTTTTTTTCCCCCTTTTCCCTGGACCTTTTGGTTAAGGTCTTTCTCTTATGCGTTTTCTTTTTCCTCTTCATTATTATGGTATCTGAAACTAAAATGCTTGATCAGTTGGGGGATTCATTCGATTAAAGAAGAACTAAGTTGGGGAAGGGCTAAAAAGTTAGAAAGTTATATGGTTAAGAAACATAACGAGATTTTTTTCTTGATATCTATGACTGTATGGGCCATTAGCCAGCTCGCGGATTTCTTTTATACATCTCATATTATACTCAACAAAGAATTTCAGTAAAGCTATATAGTACCTTGACAACTTAATGTAAATTGAAATTGTTTTTGACAATAAGTTTCTTTGAAATACAACTTTGGGATTAAAGATAAAAGGGAAAGAAATTCGTTTGAAAATCCCCTTGCATAGTTCAGCATGTCTAGGCTTATGAATAACGACACAAGTAATTATTCAAGGTCATCTATATATCCTTTTGGTGTATCCTCTAAGATAAGACTATCCTTTTGGAATTTGATTATTATCTGGTTGGAAAGCTAGATTGAGCTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCTGAGGGTATGAAGGTAGTTAATGGAATTCCATGCATGAATATCAGCCATATAAAACAACTAGTACTGTTATGTGGACCATGGAATACAGCATCCGATTTTAACTTTTAAGGAAGTTTTCAATAACTTGTGATTCATTCAACGTTATTTTATTAAAAAGACGAACCTACTATGTGAAAAACAAAACAAAATTTGTATATATCTGTATAAATAATTAAAATTTAATTTTTATATTTTATTAAATAAAATTTTTCTATATTTAATTTTATGGTACATGATTAATGATTTAAATATCTAAAATATTCGAGTTACACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAACACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAGAAGATGAAAAATAAGGAAAAGGGCGCTGTTCTTTTCTTCAATGCTAACATGAATAAATGCAACTAATTACTAGATCCATGGAGTGGTGCAATACTATATTCAATGAGATTTCAGCATAAACGTATATCAGAGATAAAGGGAATTCAGTCAAAGACATTTCATTATGAAAATGGGATGAAATACCATGAATTTTCAAGGATGATGCATCTAATTAAATATAACATCATATTCGTAATTTAACAATATACTATCTTTGATCTAATATACATGATGATAATGAAAGGAAAAGACATTTTACCTGTCGTTTTCTTTTAGTTCTCGGAAGGTTTTGATATAAAATTTGATCCAAAGTGCAACTCTTTGATATGTTTGCAGCTACTGTGGTCAGAGAAGATATTGGATTGACTTTAGAAAAGATCGGGAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAAGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGGTGCTGGAATCCTCCCTTATCTAATGCTGAGATATCCTACATTTCGAGGTTTTCTGCATTGCAGGATCCATTTCTGAGTAATATAAAAGAACACAAATTTCCATGATGAAGTATATTGCTTTGACGTTTAGTTGAATACACCAAGAGACATACTATCATCTATTCTGCAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGCCGAATTGCAATACTTCAGGTGATGATATTTTAAGAAAATCAAAATATTTACTATTATCATCATCGGGAAATAGCAACTTACACAAGACTCATTCACTTTGTCCATATTCTAAATTGTAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCGTTGAATGCATCAAAGGTGTATAGTTGGTCTGTTTTCCTTGAGAATATGAGTTCCAAATATCAGTTATAACCTTATGTTTGTTATAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGACGAACAGATGGTATCCCTCTTGGTTTACCCCAAATTTTTTCTGTTATAAATTCTTAATATTAAATGTTAAATTGTTTGATTATGATGATTACAGGTAGATTTAGTTTTAATTAGCATATCAACTAGAAAATCACGTTAATTCATACGATGGGTTCTCTAATTTGTTTATATCAATTGCACTGGTCAACTGCAGATTGGAGCCGAAATTTTCAAAAGGGCTTTGGGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGGTCGCTGTGAACAAAGGAATTTGCTTCTAATTTGGTGTATAATTTTTTTTCCTCTCATTTTCACATATCGAGTCTAATCAATCTTGGTAAAAATATTTATATCTCACAGGTTCTAATTAACAATGATTTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCATGGATCCATCAAAGGTTTATGAACTTTCTTCAGACCTCTTTGACAGTCTTGTTTTACCATTCCGAATAGTTTTTAAGCAATTCGACCGAATTAGCAGAAAAGCATCCATCTTTTGGTGAAACCTGAAATTTTTAGTAGCTAAAGGAACTTAAAAAATATAGATTGAGTGAGGTTGATTGAAAAATATAGAACTGTGAAGAGTGGTTTTCCATCAACCAACAATTTCATTGCACTAACTCTTAGTTCTCTACTGATATCTGAGACAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTGGTTGATATGAAGAAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGTAAGTGGGTTAACAAATATATGGTTGCCTTTATTCTCTGAACCCAATTCGTTTTGATTAACAATCCTGCTTTTGATGCTATAGGCGGCATCAGACAAATGGGTCTCTAGCTCGACGGACAAGATCAGACTATGTCGGGAGTATTCTCAAGTTGAAGGAATTCTATGGGAGTATCGTTTTCAGACAGCCGTACGGTATTTCAGTCACCAGACAAATGGGTCTCGACTCTGGAGCCACCATTAAAATGGTATGTAGCCATGAACTAGCTGATACAAGGCATGTTGAGCAGCAAGTGAAAGACAAGGAGGCCGAGAATTTGTAGATAGAACGCTCTCTTCAAAGACGAAAATTTGATTAAAGTTGAAAATCCACAAGTCAATCAAACTACTTGTGCTACCCATAATGTCCTGTATTTTGTTGATTAGCATGTAACTGGGATGAAGGGAATAATCTTAAGACTCAGTTTGTCTTTAAGAACTGTCTGGAGTTAAAGATTTCGTCCAATTAATGCTGTAATCTTACATCCACGAATGACAAATTTATAAGGTTTAAACATTTTATTTTGGTCATT

mRNA sequence

TTTCAATCATAAATGACTCGTGAAATAGCCATTCCTACACAAATCTCAAAGGAAAAAAAAAGCCTTTACCGTTAAATGACGGACCCTGAATCGCGCCAAAATAACCCGTCCAGATATTTCCCGCTTGGTTATTCCATTTGCAGGCATATCTTCCTCCTTATCCACCAACCGAAATGTAATCCGCTATAGCAATTTATCTTCATCGTACACTTTTGATGCTTTTGTTCTGCGAATTGCAGAACCATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAGGTCAAAACCAAAACCAATGCCAAACAAACCGCCGTCTTCATTGCCTCCTGCGTTGAACCCCACCTCCAAATCTCCGCCCAAGGAACTTTACTTCAACCACGATGGCTCTACCTTTAAAAAACTTCAGGTCGGAGTTAATTTGGTGGCGGAGCTGGTGGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATCGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAGCTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCTGAGGCTACTGTGGTCAGAGAAGATATTGGATTGACTTTAGAAAAGATCGGGAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAAGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGCCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCGTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGGGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGGTTCTAATTAACAATGATTTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCATGGATCCATCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTGGTTGATATGAAGAAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGTAAGCGGCATCAGACAAATGGGTCTCTAGCTCGACGGACAAGATCAGACTATGTCGGGAGTATTCTCAAGTTGAAGGAATTCTATGGGAGTATCGTTTTCAGACAGCCGTACGGTATTTCAGTCACCAGACAAATGGGTCTCGACTCTGGAGCCACCATTAAAATGGTATGTAGCCATGAACTAGCTGATACAAGGCATGTTGAGCAGCAAGTGAAAGACAAGGAGGCCGAGAATTTGTAGATAGAACGCTCTCTTCAAAGACGAAAATTTGATTAAAGTTGAAAATCCACAAGTCAATCAAACTACTTGTGCTACCCATAATGTCCTGTATTTTGTTGATTAGCATGTAACTGGGATGAAGGGAATAATCTTAAGACTCAGTTTGTCTTTAAGAACTGTCTGGAGTTAAAGATTTCGTCCAATTAATGCTGTAATCTTACATCCACGAATGACAAATTTATAAGGTTTAAACATTTTATTTTGGTCATT

Coding sequence (CDS)

ATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAGGTCAAAACCAAAACCAATGCCAAACAAACCGCCGTCTTCATTGCCTCCTGCGTTGAACCCCACCTCCAAATCTCCGCCCAAGGAACTTTACTTCAACCACGATGGCTCTACCTTTAAAAAACTTCAGGTCGGAGTTAATTTGGTGGCGGAGCTGGTGGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATCGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAGCTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCTGAGGCTACTGTGGTCAGAGAAGATATTGGATTGACTTTAGAAAAGATCGGGAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAAGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGCCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCGTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGGGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGGTTCTAATTAACAATGATTTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCATGGATCCATCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTGGTTGATATGAAGAAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGTAAGCGGCATCAGACAAATGGGTCTCTAGCTCGACGGACAAGATCAGACTATGTCGGGAGTATTCTCAAGTTGAAGGAATTCTATGGGAGTATCGTTTTCAGACAGCCGTACGGTATTTCAGTCACCAGACAAATGGGTCTCGACTCTGGAGCCACCATTAAAATGGTATGTAGCCATGAACTAGCTGATACAAGGCATGTTGAGCAGCAAGTGAAAGACAAGGAGGCCGAGAATTTGTAG

Protein sequence

MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEATVVREDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQMIGAEIFKRALGYPTKLIARNAGVNGSVVIDKVLINNDLDYGYNAATDRYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKKPEPIPRRTPMPISGKRHQTNGSLARRTRSDYVGSILKLKEFYGSIVFRQPYGISVTRQMGLDSGATIKMVCSHELADTRHVEQQVKDKEAENL

Homology

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BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot
Match: Q9C667 (Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B4 PE=1 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 1.3e-114
Identity = 267/591 (45.18%), Postives = 323/591 (54.65%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MA S   +S L    P+     R KP        SS  P      ++  KE++FN DGS 
Sbjct: 1   MAFSQAALSAL----PLSDRTFRKKP-----SSSSSSSPNFVLRVRAAAKEVHFNRDGSV 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQ G ++VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLENVGVK
Sbjct: 61  TKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTS++LA GLI E                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 SMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAED 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+R+++GL+LEK G
Sbjct: 301 IEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 396
           KEVLG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTEENF KKILNER+ARLS
Sbjct: 361 KEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLS 420

[Close]

BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot
Match: P21240 (Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B1 PE=1 SV=3)

HSP 1 Score: 413.7 bits (1062), Expect = 2.8e-114
Identity = 242/541 (44.73%), Postives = 307/541 (56.75%), Query Frame = 0


Query: 50  KELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 109
           KEL+FN DG+T ++LQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+E
Sbjct: 57  KELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 116

Query: 110 LEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------- 169
           LEDP+EN+G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE                   
Sbjct: 117 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIE 176

Query: 170 ------------------------------------------------------------ 229
                                                                       
Sbjct: 177 KTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKS 236

Query: 230 ------------------------------------------------------------ 289
                                                                       
Sbjct: 237 AENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIR 296

Query: 290 -------------------------------------------------------ATVVR 349
                                                                  ATV+R
Sbjct: 297 GGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIR 356

Query: 350 EDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPK 397
           E++GL+L+K GKEVLG+ASKVV++K+++ IV DG+T++AV+KRV QI+ L+E  E+++ K
Sbjct: 357 EEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEK 416

[Close]

BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot
Match: P21241 (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.2e-112
Identity = 240/540 (44.44%), Postives = 304/540 (56.30%), Query Frame = 0


Query: 42  NPTSKSPPKELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 101
           +P      KEL+FN DG+T +KLQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG
Sbjct: 49  SPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDG 108

Query: 102 ETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE----------- 161
            TV +E+ELEDP+EN+G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE           
Sbjct: 109 VTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANP 168

Query: 162 ------------------------------------------------------------ 221
                                                                       
Sbjct: 169 VLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGV 228

Query: 222 ------------------------------------------------------------ 281
                                                                       
Sbjct: 229 VTLEEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLV 288

Query: 282 ------------------------------------------------------------ 341
                                                                       
Sbjct: 289 GVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAI 348

Query: 342 ---ATVVREDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLME 388
              ATV+RE++GL+L+K GKEVLG A+KVV++K+++ IV DG+T++AVQKRV QI+ L+E
Sbjct: 349 LTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIE 408

[Close]

BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot
Match: Q9LJE4 (Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B2 PE=1 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 2.0e-112
Identity = 258/593 (43.51%), Postives = 321/593 (54.13%), Query Frame = 0


Query: 1   MASSPTPISPLS---FPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHD 60
           MAS+ T  S L     PN I  S + S       +  +       P      KEL+FN D
Sbjct: 1   MASTFTATSSLGSLLAPNAIKLSSATSISSSSFGRRHNVCVRRSRPAIVCAAKELHFNKD 60

Query: 61  GSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENV 120
           G+T +KLQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+ELEDP+EN+
Sbjct: 61  GTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120

Query: 121 GVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE--------------------------- 180
           G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE                           
Sbjct: 121 GAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVN 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 ELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVV 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 EGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLEDAIRGGYPILII 300

Query: 301 -----------------------------------------------ATVVREDIGLTLE 360
                                                          ATV+RE++GL+L+
Sbjct: 301 AEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLD 360

Query: 361 KIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIA 397
           K GKEVLG+ASKVV++K+ T IV DG T+EAV KRV+QI+ L+E  E+++ K+ LNERIA
Sbjct: 361 KAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYEKEKLNERIA 420

[Close]

BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot
Match: P08927 (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 404.4 bits (1038), Expect = 1.7e-111
Identity = 244/541 (45.10%), Postives = 299/541 (55.27%), Query Frame = 0


Query: 50  KELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 109
           KEL+FN DGS  KKLQ GVN +A+LVGVTLGPKGRNVVL++KYG PKIVNDG TV KE+E
Sbjct: 51  KELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVE 110

Query: 110 LEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------- 169
           LEDP+EN+G KLVRQA AKTNDLAGDG+TTSVVLAQGLIAE                   
Sbjct: 111 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 170

Query: 170 ------------------------------------------------------------ 229
                                                                       
Sbjct: 171 KTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGKS 230

Query: 230 ------------------------------------------------------------ 289
                                                                       
Sbjct: 231 AENSLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKITNARDLINILEDAIR 290

Query: 290 -------------------------------------------------------ATVVR 349
                                                                   TV+R
Sbjct: 291 SGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIR 350

Query: 350 EDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPK 397
           E++GLTL+K  KEVLG+A+KVV++KD+T IV DG+T+EAV KRV QI+  +E  E+ + K
Sbjct: 351 EEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEK 410

[Close]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL
Match: A0A0A0KWB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607990 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 7.4e-174
Identity = 368/590 (62.37%), Postives = 378/590 (64.07%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSF NPI  SR++ K  P PNKPPSSLPPALN T K PPK+LYFNHDGST
Sbjct: 23  MASSPTPISPLSFTNPISTSRTKPKSLPFPNKPPSSLPPALNSTPKPPPKDLYFNHDGST 82

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
           FKKLQVGVNLVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK
Sbjct: 83  FKKLQVGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 142

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 143 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELK 202

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 203 LMSREVEDHEIAHVAAVSAGNDYAVGSLVSDAFRQVGWKGVVQIEKGKSVDNSLQIVEGM 262

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 263 QFDRGYLSPYFVTDRRKMVVEFHECKLLLVDKKISDPKEMFKILDNAVKEKYPIVILAEG 322

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATVVRED GLTLEK G
Sbjct: 323 IEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTG 382

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 397
           KEVLGSA KVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEE FPKKILNERIARLS
Sbjct: 383 KEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLS 442

[Close]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL
Match: A0A5D3CCJ6 (RuBisCO large subunit-binding protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00380 PE=3 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 2.4e-172
Identity = 366/592 (61.82%), Postives = 379/592 (64.02%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPM--PNKPPSSLPPALNPTSKSPPKELYFNHDG 60
           MASSP+PISPLSF NPI  SR++ KP P+  PNKPPSS PPA NPT K PPKELYFNHDG
Sbjct: 1   MASSPSPISPLSFTNPISTSRTKPKPLPLPFPNKPPSSFPPASNPTPKPPPKELYFNHDG 60

Query: 61  STFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120
           STFKKLQ+GVNLVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG
Sbjct: 61  STFKKLQIGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120

Query: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE---------------------------- 180
           VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                            
Sbjct: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSE 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LKLMSREVEDHEIAHVAAVSAGNDYAVGNLVSDALRQVGWKGVVQIEKGKSVDNSLQIVE 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 GMQFDRGYLSPYFVTDRRKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILA 300

Query: 301 ----------------------------------------------ATVVREDIGLTLEK 360
                                                         ATVVRED GLTLEK
Sbjct: 301 EGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEK 360

Query: 361 IGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIAR 397
            GKEVLGSA KVVISKDSTLIVTDGNTREAVQKRV+QIQKLMENTEE FPKKILNERIAR
Sbjct: 361 TGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTEEKFPKKILNERIAR 420

[Close]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL
Match: A0A1S3BEP6 (ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489212 PE=3 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 2.4e-172
Identity = 366/592 (61.82%), Postives = 379/592 (64.02%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPM--PNKPPSSLPPALNPTSKSPPKELYFNHDG 60
           MASSP+PISPLSF NPI  SR++ KP P+  PNKPPSS PPA NPT K PPKELYFNHDG
Sbjct: 1   MASSPSPISPLSFTNPISTSRTKPKPLPLPFPNKPPSSFPPASNPTPKPPPKELYFNHDG 60

Query: 61  STFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120
           STFKKLQ+GVNLVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG
Sbjct: 61  STFKKLQIGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120

Query: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE---------------------------- 180
           VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                            
Sbjct: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSE 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LKLMSREVEDHEIAHVAAVSAGNDYAVGNLVSDALRQVGWKGVVQIEKGKSVDNSLQIVE 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 GMQFDRGYLSPYFVTDRRKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILA 300

Query: 301 ----------------------------------------------ATVVREDIGLTLEK 360
                                                         ATVVRED GLTLEK
Sbjct: 301 EGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEK 360

Query: 361 IGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIAR 397
            GKEVLGSA KVVISKDSTLIVTDGNTREAVQKRV+QIQKLMENTEE FPKKILNERIAR
Sbjct: 361 TGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTEEKFPKKILNERIAR 420

[Close]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL
Match: A0A6J1HZU9 (chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467722 PE=3 SV=1)

HSP 1 Score: 584.3 bits (1505), Expect = 4.5e-163
Identity = 354/590 (60.00%), Postives = 369/590 (62.54%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSFPN       RSKPK  PNKPP SLPPA  P+ KS PKE+YFN DGS 
Sbjct: 1   MASSPTPISPLSFPN------RRSKPK--PNKPPPSLPPAWKPSPKSMPKEIYFNRDGSA 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQVGV+LVAELVGVTLGPKGRNVVLQ+KYGPPKIVNDGETVLKEIELED LENVGVK
Sbjct: 61  LKKLQVGVDLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELE 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEG 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+RED GLTLEK G
Sbjct: 301 FEQAALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 397
           KEVLGSA+KVVI+KDSTLIVTDG TREAVQKRVLQIQKL+ENTEE FPKKILNERIARLS
Sbjct: 361 KEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLS 420

[Close]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL
Match: A0A6J1G0R7 (chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449606 PE=3 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 6.5e-162
Identity = 351/590 (59.49%), Postives = 368/590 (62.37%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSFPN       RSKPK  PNKPP SLPP   P+ KS PKE+YFN DGS 
Sbjct: 1   MASSPTPISPLSFPN------RRSKPK--PNKPPPSLPPPWKPSPKSMPKEIYFNRDGSA 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQVGV+LVAELVGVTLGPKGRNVVLQ KYGPPKIVNDGETVLKEIELED LENVGVK
Sbjct: 61  LKKLQVGVDLVAELVGVTLGPKGRNVVLQRKYGPPKIVNDGETVLKEIELEDRLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEG 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+RED GLTLEK G
Sbjct: 301 IEQAALAPVIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 397
           KEVLGSA+KVVI+KDSTLIVTDG TREAVQKRVLQIQKL+ENTEE FPKKILNERIARLS
Sbjct: 361 KEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLS 420

[Close]

BLAST of Lsi04G003250 vs. NCBI nr
Match: XP_038892006.1 (ruBisCO large subunit-binding protein subunit beta, chloroplastic [Benincasa hispida])

HSP 1 Score: 634.8 bits (1636), Expect = 6.0e-178
Identity = 377/591 (63.79%), Postives = 385/591 (65.14%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPI PLSFPN  P SRSR+KP+P+PN+PPSSLPPALNPT KSPPKELYFN DGST
Sbjct: 1   MASSPTPIPPLSFPN--PTSRSRTKPRPIPNRPPSSLPPALNPTPKSPPKELYFNRDGST 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
           FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK
Sbjct: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSV+LAQGLIAE                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVILAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LLSREVEDHEIAHVAAVSAGNDYAVGNLVSHALRQVGRKGVVQIEKGKSIDNSLQIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEG 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       A VVRED GLTLEK G
Sbjct: 301 IEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGAIVVREDSGLTLEKTG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 398
           KEVLGSASKVVISKDSTLIVTDGNTREAV+KRVLQIQKLMENTEE FPKKILNERIARLS
Sbjct: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVRKRVLQIQKLMENTEEKFPKKILNERIARLS 420

[Close]

BLAST of Lsi04G003250 vs. NCBI nr
Match: XP_004135135.2 (ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 [Cucumis sativus] >KGN52011.1 hypothetical protein Csa_009336 [Cucumis sativus])

HSP 1 Score: 620.2 bits (1598), Expect = 1.5e-173
Identity = 368/590 (62.37%), Postives = 378/590 (64.07%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSF NPI  SR++ K  P PNKPPSSLPPALN T K PPK+LYFNHDGST
Sbjct: 23  MASSPTPISPLSFTNPISTSRTKPKSLPFPNKPPSSLPPALNSTPKPPPKDLYFNHDGST 82

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
           FKKLQVGVNLVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK
Sbjct: 83  FKKLQVGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 142

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 143 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELK 202

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 203 LMSREVEDHEIAHVAAVSAGNDYAVGSLVSDAFRQVGWKGVVQIEKGKSVDNSLQIVEGM 262

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 263 QFDRGYLSPYFVTDRRKMVVEFHECKLLLVDKKISDPKEMFKILDNAVKEKYPIVILAEG 322

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATVVRED GLTLEK G
Sbjct: 323 IEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTG 382

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 397
           KEVLGSA KVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEE FPKKILNERIARLS
Sbjct: 383 KEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLS 442

[Close]

BLAST of Lsi04G003250 vs. NCBI nr
Match: XP_008446493.1 (PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 [Cucumis melo] >KAA0034496.1 ruBisCO large subunit-binding protein subunit beta [Cucumis melo var. makuwa] >TYK09050.1 ruBisCO large subunit-binding protein subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 615.1 bits (1585), Expect = 4.9e-172
Identity = 366/592 (61.82%), Postives = 379/592 (64.02%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPM--PNKPPSSLPPALNPTSKSPPKELYFNHDG 60
           MASSP+PISPLSF NPI  SR++ KP P+  PNKPPSS PPA NPT K PPKELYFNHDG
Sbjct: 1   MASSPSPISPLSFTNPISTSRTKPKPLPLPFPNKPPSSFPPASNPTPKPPPKELYFNHDG 60

Query: 61  STFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120
           STFKKLQ+GVNLVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG
Sbjct: 61  STFKKLQIGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVG 120

Query: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE---------------------------- 180
           VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                            
Sbjct: 121 VKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSE 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LKLMSREVEDHEIAHVAAVSAGNDYAVGNLVSDALRQVGWKGVVQIEKGKSVDNSLQIVE 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 GMQFDRGYLSPYFVTDRRKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILA 300

Query: 301 ----------------------------------------------ATVVREDIGLTLEK 360
                                                         ATVVRED GLTLEK
Sbjct: 301 EGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEK 360

Query: 361 IGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIAR 397
            GKEVLGSA KVVISKDSTLIVTDGNTREAVQKRV+QIQKLMENTEE FPKKILNERIAR
Sbjct: 361 TGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTEEKFPKKILNERIAR 420

[Close]

BLAST of Lsi04G003250 vs. NCBI nr
Match: KAG6574020.1 (Chaperonin 60 subunit beta 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 592.0 bits (1525), Expect = 4.4e-165
Identity = 359/600 (59.83%), Postives = 377/600 (62.83%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSFPN       RSKPK  PNKPP SLPP   P+ KS PKE+YFN DGS 
Sbjct: 1   MASSPTPISPLSFPN------RRSKPK--PNKPPPSLPPPWKPSPKSMPKEIYFNRDGSA 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQVGV+LVAELVGVTLGPKGRNVVLQ+KYGPPKIVNDGETVLKEIELED LENVGVK
Sbjct: 61  LKKLQVGVDLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEG 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+RED GLTLEK G
Sbjct: 301 IEQAALAPVIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 407
           KEVLGSA+KVVISKDSTLIVTDG TREAVQKRVLQIQKL+ENTEE FPKKILNERIARLS
Sbjct: 361 KEVLGSATKVVISKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLS 420

[Close]

BLAST of Lsi04G003250 vs. NCBI nr
Match: XP_023541180.1 (chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 587.8 bits (1514), Expect = 8.4e-164
Identity = 357/600 (59.50%), Postives = 375/600 (62.50%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MASSPTPISPLSFPN       RSKPK  PNKPP SLPP   P+ KS PKE+YFN DGS 
Sbjct: 1   MASSPTPISPLSFPN------RRSKPK--PNKPPPSLPPPWKPSPKSMPKEIYFNRDGSA 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQVGV+LVAELVGVTLGPKGRNVVLQ+KYGPPKIVNDGETVLKEIELED LENVGVK
Sbjct: 61  LKKLQVGVDLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSVDNSLQIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEG 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+RED GLTLEK G
Sbjct: 301 IEQAALAPVIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 407
            EVLGSA+KVVI+KDSTLIVTDG TREAVQKRVLQIQKL+ENTEE FPKKILNERIARLS
Sbjct: 361 NEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLS 420

[Close]

BLAST of Lsi04G003250 vs. TAIR 10
Match: AT1G26230.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 414.8 bits (1065), Expect = 9.0e-116
Identity = 267/591 (45.18%), Postives = 323/591 (54.65%), Query Frame = 0


Query: 1   MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGST 60
           MA S   +S L    P+     R KP        SS  P      ++  KE++FN DGS 
Sbjct: 1   MAFSQAALSAL----PLSDRTFRKKP-----SSSSSSSPNFVLRVRAAAKEVHFNRDGSV 60

Query: 61  FKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
            KKLQ G ++VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLENVGVK
Sbjct: 61  TKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVK 120

Query: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------------------ 180
           LVRQAGAKTNDLAGDGSTTS++LA GLI E                              
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 SMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGM 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 QFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAED 300

Query: 301 --------------------------------------------ATVVREDIGLTLEKIG 360
                                                       ATV+R+++GL+LEK G
Sbjct: 301 IEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAG 360

Query: 361 KEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLS 396
           KEVLG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTEENF KKILNER+ARLS
Sbjct: 361 KEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLS 420

[Close]

BLAST of Lsi04G003250 vs. TAIR 10
Match: AT1G55490.1 (chaperonin 60 beta )

HSP 1 Score: 413.7 bits (1062), Expect = 2.0e-115
Identity = 242/541 (44.73%), Postives = 307/541 (56.75%), Query Frame = 0


Query: 50  KELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 109
           KEL+FN DG+T ++LQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+E
Sbjct: 57  KELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 116

Query: 110 LEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------- 169
           LEDP+EN+G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE                   
Sbjct: 117 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIE 176

Query: 170 ------------------------------------------------------------ 229
                                                                       
Sbjct: 177 KTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKS 236

Query: 230 ------------------------------------------------------------ 289
                                                                       
Sbjct: 237 AENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIR 296

Query: 290 -------------------------------------------------------ATVVR 349
                                                                  ATV+R
Sbjct: 297 GGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIR 356

Query: 350 EDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPK 397
           E++GL+L+K GKEVLG+ASKVV++K+++ IV DG+T++AV+KRV QI+ L+E  E+++ K
Sbjct: 357 EEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEK 416

[Close]

BLAST of Lsi04G003250 vs. TAIR 10
Match: AT1G55490.2 (chaperonin 60 beta )

HSP 1 Score: 413.7 bits (1062), Expect = 2.0e-115
Identity = 242/541 (44.73%), Postives = 307/541 (56.75%), Query Frame = 0


Query: 50  KELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 109
           KEL+FN DG+T ++LQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+E
Sbjct: 57  KELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 116

Query: 110 LEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE------------------- 169
           LEDP+EN+G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE                   
Sbjct: 117 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIE 176

Query: 170 ------------------------------------------------------------ 229
                                                                       
Sbjct: 177 KTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKS 236

Query: 230 ------------------------------------------------------------ 289
                                                                       
Sbjct: 237 AENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIR 296

Query: 290 -------------------------------------------------------ATVVR 349
                                                                  ATV+R
Sbjct: 297 GGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIR 356

Query: 350 EDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPK 397
           E++GL+L+K GKEVLG+ASKVV++K+++ IV DG+T++AV+KRV QI+ L+E  E+++ K
Sbjct: 357 EEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEK 416

[Close]

BLAST of Lsi04G003250 vs. TAIR 10
Match: AT3G13470.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 407.5 bits (1046), Expect = 1.4e-113
Identity = 258/593 (43.51%), Postives = 321/593 (54.13%), Query Frame = 0


Query: 1   MASSPTPISPLS---FPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHD 60
           MAS+ T  S L     PN I  S + S       +  +       P      KEL+FN D
Sbjct: 1   MASTFTATSSLGSLLAPNAIKLSSATSISSSSFGRRHNVCVRRSRPAIVCAAKELHFNKD 60

Query: 61  GSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENV 120
           G+T +KLQ GVN +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+ELEDP+EN+
Sbjct: 61  GTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120

Query: 121 GVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAE--------------------------- 180
           G KLVRQA AKTNDLAGDG+TTSVVLAQG IAE                           
Sbjct: 121 GAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVN 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 ELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVV 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 EGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLEDAIRGGYPILII 300

Query: 301 -----------------------------------------------ATVVREDIGLTLE 360
                                                          ATV+RE++GL+L+
Sbjct: 301 AEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLD 360

Query: 361 KIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIA 397
           K GKEVLG+ASKVV++K+ T IV DG T+EAV KRV+QI+ L+E  E+++ K+ LNERIA
Sbjct: 361 KAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYEKEKLNERIA 420

[Close]

BLAST of Lsi04G003250 vs. TAIR 10
Match: AT1G26230.2 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-111
Identity = 244/528 (46.21%), Postives = 296/528 (56.06%), Query Frame = 0


Query: 64  LQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVR 123
           ++ G ++VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLENVGVKLVR
Sbjct: 3   VKAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVR 62

Query: 124 QAGAKTNDLAGDGSTTSVVLAQGLIAE--------------------------------- 183
           QAGAKTNDLAGDGSTTS++LA GLI E                                 
Sbjct: 63  QAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMS 122

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 123 REIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFN 182

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 183 RGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQ 242

Query: 304 -----------------------------------------ATVVREDIGLTLEKIGKEV 363
                                                    ATV+R+++GL+LEK GKEV
Sbjct: 243 DALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEV 302

Query: 364 LGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLSGRI 396
           LG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTEENF KKILNER+ARLSG I
Sbjct: 303 LGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLSGGI 362

The following BLAST results are available for this feature:

BLAST of Lsi04G003250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C667	1.3e-114	45.18	Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
P21240	2.8e-114	44.73	Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
P21241	1.2e-112	44.44	RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica na...	[more]
Q9LJE4	2.0e-112	43.51	Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
P08927	1.7e-111	45.10	RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativ...	[more]

BLAST of Lsi04G003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWB1	7.4e-174	62.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607990 PE=3 SV=1	[more]
A0A5D3CCJ6	2.4e-172	61.82	RuBisCO large subunit-binding protein subunit beta OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BEP6	2.4e-172	61.82	ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 OS=...	[more]
A0A6J1HZU9	4.5e-163	60.00	chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1G0R7	6.5e-162	59.49	chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Lsi04G003250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892006.1	6.0e-178	63.79	ruBisCO large subunit-binding protein subunit beta, chloroplastic [Benincasa his...	[more]
XP_004135135.2	1.5e-173	62.37	ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 [Cu...	[more]
XP_008446493.1	4.9e-172	61.82	PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic iso...	[more]
KAG6574020.1	4.4e-165	59.83	Chaperonin 60 subunit beta 4, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_023541180.1	8.4e-164	59.50	chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi04G003250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26230.1	9.0e-116	45.18	TCP-1/cpn60 chaperonin family protein	[more]
AT1G55490.1	2.0e-115	44.73	chaperonin 60 beta	[more]
AT1G55490.2	2.0e-115	44.73	chaperonin 60 beta	[more]
AT3G13470.1	1.4e-113	43.51	TCP-1/cpn60 chaperonin family protein	[more]
AT1G26230.2	2.3e-111	46.21	TCP-1/cpn60 chaperonin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 192..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..406
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR45633:SF7	CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC	coord: 25..151 coord: 150..385
None	No IPR available	PANTHER	PTHR45633	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	coord: 25..151 coord: 150..385
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	PRINTS	PR00304	TCOMPLEXTCP1	coord: 73..89 score: 58.15 coord: 129..148 score: 52.66 coord: 95..113 score: 53.14
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	1.10.560.10		coord: 264..378 e-value: 2.1E-76 score: 259.4 coord: 62..150 e-value: 1.4E-36 score: 128.0
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	48592	GroEL equatorial domain-like	coord: 58..380
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	GENE3D	3.30.260.10		coord: 227..263 e-value: 2.1E-76 score: 259.4
IPR027409	GroEL-like apical domain superfamily	GENE3D	3.50.7.10	GroEL	coord: 151..226 e-value: 2.1E-76 score: 259.4
IPR027409	GroEL-like apical domain superfamily	SUPERFAMILY	52029	GroEL apical domain-like	coord: 148..229
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 161..380 e-value: 1.3E-41 score: 142.8 coord: 71..165 e-value: 9.0E-25 score: 87.3
IPR018370	Chaperonin Cpn60, conserved site	PROSITE	PS00296	CHAPERONINS_CPN60	coord: 258..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G003250.1	Lsi04G003250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity