Lsi03G003280 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTGGGACACAATTCTTGCTAACCTGATCTTTATCTTTTTTGTTCTTTCTTTTCTTTTCCATTTTAATTATGTCTAATGCGTTGTAATCAGATACATTAATCAATAAAATCCTTTCTTTAATTTTTCTCTTTATTATTACCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAGGGGGTCCAATCCAATCCTTCTTCTTGTTTTTCTCTTCTTCCCACGATTTTTCTTCCCTTTTCCCCTCGACCCTTTTCCCCATCTCGAATATCTCTGACGATTTCGCTTTTGGGTTCTTTGTTTTGCTACTTTTGGTTTACAGATCCACCGTTTTTCCAATCTCTAATCTCAGGTATGTGATTTTAACTCGATTTTCTTTCACATTTCCCAGATCACGATTGATTTTTGCGTCTTTAAGATCTTTGTTGCCTATTTCTATTGTTAAACAGTCTTGATTCTGGGTTTATTGGCTTCAGGTTCATGTTTGTTTGTTGTAATTTTATAATCTAGTCTTGAATGGGTTCGGGAGTTTGAAGTTAATCTCTCTGTGTTGAAAATATTTTTGCATTTTCTTCTACACGAAACAGAAATGGATTTGAGGAGCATATGTAATCAGTTTGATTAATGTAATGCTTATGATTTTGATCTAACAAAACAGAGAAGGGAAGTTAACTTTGAGAGTTGGGGATTGCCTGTCATCTTGGTTGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGGTATTGCACTGTGTTTTTTGGGCTGGATTCGCATCTTTAATATACCTAAATCGTCTCTGAACCAAAGGGTTAGGATATATTTATTCTTTCATATGTGTTTTGGAAGCTCTGGTACTATGCTAATTGACATGACAACTAAATTTAAAAGCTTAAGTTGATTGGTTATAGATATATTCTTTTACATGTATTCGTAATAAGGCTTTCTACTCAGTATTGGGGAATCTAAGCATCTTGCCAAACTATTTTCTAAAGGATATCTAAATGTGGCATCAACTTCTGCCTCAAGTATCCATCTGTTGATGTATCTATCACAAGTAAACACAACCTAGATATCAAAGCTTTCCAAGTATGGTTAGAATTGGGTAAATGGCGTTTAACTATTTAGTATGATGACTCCTGATATTGACTCGAGCGATAACAAGAGATTTTCTAGAAGGATTGGAAGGTGGTTTATGTTTTTTAAGAATTGGAACTCTATCTTACTGTTAATAACCTTGATCTTTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACGTACGCTCTGATTTCTTTCAGATAACTTTATGTTTCACTTCCCAAAAATTTTGCTTTCACATATTTAATTGTTTTTGAGTTTTATTTTCTACAGCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATCTGATATTGGGAAGCTTTTTCTCCAAGGAGATAAAATTATGTTGTGTATTGCAACTGATTCTTGTAACCACTAACTGGTTTCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACCCACCTACTGAGATCTTGACAAATAATTCATTATCCCCTCCCCCTTCAACAAAAGGAAGAGTGAATATTTGTTGGAGCATCCAATCTATGATGCATTAATGCATGAATGAACATCTGTTGGAGCAGACTAATTAGTTTTGGTTCAAGTTTTGAAATAAAGCTGTGAAGATACAAAATTTGAACAGTGCCATTGGGGATTAGTGGATGTTCTTAGTTGCATAGATTAAAATATTCATCACATTGTTAGTATATTTCAATTGATAGTTTTGTAGAGGATTTTATGAATTTGTTATTACAAATACTTGCAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA GTGGGACACAATTCTTGCTAACCTGATCTTTATCTTTTTTGTTCTTTCTTTTCTTTTCCATTTTAATTATGTCTAATGCGTTGTAATCAGATACATTAATCAATAAAATCCTTTCTTTAATTTTTCTCTTTATTATTACCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAGGGGGTCCAATCCAATCCTTCTTCTTGTTTTTCTCTTCTTCCCACGATTTTTCTTCCCTTTTCCCCTCGACCCTTTTCCCCATCTCGAATATCTCTGACGATTTCGCTTTTGGGTTCTTTGTTTTGCTACTTTTGGTTTACAGATCCACCGTTTTTCCAATCTCTAATCTCAGAGAAGGGAAGTTAACTTTGAGAGTTGGGGATTGCCTGTCATCTTGGTTGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPIPEA Homology
BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 1.2e-92 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 3.9e-91 Identity = 156/185 (84.32%), Postives = 171/185 (92.43%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71 Identity = 122/184 (66.30%), Postives = 152/184 (82.61%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 8.5e-70 Identity = 117/184 (63.59%), Postives = 154/184 (83.70%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69 Identity = 124/189 (65.61%), Postives = 147/189 (77.78%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105 Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105 Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 6.0e-103 Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 6.0e-103 Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A059BIA9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G03023 PE=4 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 6.2e-100 Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0
BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus]) HSP 1 Score: 391.7 bits (1005), Expect = 3.5e-105 Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0
BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida]) HSP 1 Score: 390.2 bits (1001), Expect = 1.0e-104 Identity = 184/189 (97.35%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 383.3 bits (983), Expect = 1.2e-102 Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Lsi03G003280 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102 Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]) HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102 Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94 Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|