Lsi02G024500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G024500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 31041171 .. 31041541 (+)
RNA-Seq ExpressionLsi02G024500
SyntenyLsi02G024500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAGAACCCTCGACTGTGGAGCATCGGGATCTCCACGCATCGCATTTTCTTTCCAAATCTCCGTCGCTCTCCGAAGCGAATCCTCCGCCGTATCCAGCTGCTCCGGCAACCACCCAATCACATCCTTCCCGGCCCCATCGTACGCCGTCCCGTCCGTCGCTCTGGTTATCGGCTTGCGAGTATCCGCAAACTCGATCTCCGCCAACGGCGACGCCTTGTGGTGCTTGTAATAATCTCTATTGTCTTCCTCCTGTTCTTTCATTTCAGTTCTGTTTTTATTCGCTTCCTCCAAAGGCCCGCCGTAGACGCCGATGCAACTCACGTCGTCGGTCACCGTACTGTGGGCTCTTTTTTGTTGAGTAATGGGCTT

mRNA sequence

CTAAGAACCCTCGACTGTGGAGCATCGGGATCTCCACGCATCGCATTTTCTTTCCAAATCTCCGTCGCTCTCCGAAGCGAATCCTCCGCCGTATCCAGCTGCTCCGGCAACCACCCAATCACATCCTTCCCGGCCCCATCGTACGCCGTCCCGTCCGTCGCTCTGGTTATCGGCTTGCGAGTATCCGCAAACTCGATCTCCGCCAACGGCGACGCCTTGTGGTGCTTTTCTGTTTTTATTCGCTTCCTCCAAAGGCCCGCCGTAGACGCCGATGCAACTCACGTCGTCGGTCACCGTACTGTGGGCTCTTTTTTGTTGAGTAATGGGCTT

Coding sequence (CDS)

CTAAGAACCCTCGACTGTGGAGCATCGGGATCTCCACGCATCGCATTTTCTTTCCAAATCTCCGTCGCTCTCCGAAGCGAATCCTCCGCCGTATCCAGCTGCTCCGGCAACCACCCAATCACATCCTTCCCGGCCCCATCGTACGCCGTCCCGTCCGTCGCTCTGGTTATCGGCTTGCGAGTATCCGCAAACTCGATCTCCGCCAACGGCGACGCCTTGTGGTGCTTTTCTGTTTTTATTCGCTTCCTCCAAAGGCCCGCCGTAGACGCCGATGCAACTCACGTCGTCGGTCACCGTACTGTGGGCTCTTTTTTGTTGAGTAATGGGCTT

Protein sequence

LRTLDCGASGSPRIAFSFQISVALRSESSAVSSCSGNHPITSFPAPSYAVPSVALVIGLRVSANSISANGDALWCFSVFIRFLQRPAVDADATHVVGHRTVGSFLLSNGL
Homology
[Close]
BLAST of Lsi02G024500 vs. ExPASy TrEMBL
Match: A0A2G9I347 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03124 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   LRTLDCGASGSPRIAFSFQISVALRSESSAVSSCSGNHPITSFPAPSY 49
           L TL  G SGSP IA    IS+ALRSESSAVSSCSG H +T  P PS+
Sbjct: 117 LSTLPWGESGSPLIALVLNISIALRSESSAVSSCSGRHTLT--PVPSF 162

[Close]
BLAST of Lsi02G024500 vs. NCBI nr
Match: PIN24174.1 (hypothetical protein CDL12_03124 [Handroanthus impetiginosus])

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-04
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   LRTLDCGASGSPRIAFSFQISVALRSESSAVSSCSGNHPITSFPAPSY 49
           L TL  G SGSP IA    IS+ALRSESSAVSSCSG H +T  P PS+
Sbjct: 117 LSTLPWGESGSPLIALVLNISIALRSESSAVSSCSGRHTLT--PVPSF 162

The following BLAST results are available for this feature:
BLAST of Lsi02G024500 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G024500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G9I3472.2e-0464.58Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03124 P... [more]
BLAST of Lsi02G024500 vs. NCBI nr
Match NameE-valueIdentityDescription
PIN24174.14.5e-0464.58hypothetical protein CDL12_03124 [Handroanthus impetiginosus][more]
BLAST of Lsi02G024500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G024500.1Lsi02G024500.1mRNA