Lsi01G016660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G016660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	chr01: 15210535 .. 15212927 (+)
RNA-Seq Expression	Lsi01G016660
Synteny	Lsi01G016660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAACCCTACGCGAGATTTTGCAGCGAGCCTCCGGTAAAGAAAAGCTCCCTCTTTTTTCGCACAGCAAGAGCAGAAGAATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGCGGCAGAGGAGGTGGCCGAGGCGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTTGTTGGTTCGTATCTCCCATTACTTCTTTAATCATTCGTTGCTTTGGGCTTTCCTTCATCTTTCGCTTCTTTGTTACCAGTATGAAAAGTTTCATGAAATAGTTCTAGTTACAATGCGATGTTCACTTAGGCTCCTTAAGACTAATTATATTTTGATGTTATTGTTTTTTGCGGTTGTATATTCGGAATAAACGATGGATTCTGTTTTTGAGCTTTCCCTTTCTCTCTAGCAGTTTGTACTTTGAAGTTTCAAAAGTCTTAAGAATGAATCTCACAAGTTTTGTCTATTTTTTCTCTAAGATAGTTAATGAATCGCACAAGTTCAACTGTATTCATCACTAAAAAGGTTTTTTTTTCCTGTTACAGAGGTTTCTACTTTCCTTCATGCTTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCCATTTATCTTCAAAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCCGTGAGTCCACTGGCCTTGATTTGGTTAGTTGTTGAGTTTTGGATGCAGTTTTGGTATTTGATAAATCATTGTTTATGTTAACCTGATTGCAGTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCGAAGTACGTAATCCATCTCTTCCCTTTCCTCACCTCGACTGAGGTTTAGAATTTGAGTTGGTTCATAAACATGTTTCTTAGCATCCTTTTTCAAGTTATTGCATATGTCCATTTGAATTGAGCGGTTTTATAAGGGCTTTTGTGGTGTGCCCGTTGCACGTAGTTTTAGGTTTATTGTTCATGAGTAAGGTTTGGATAGAATTTCAGGTTAGCATGTTTTTTATTTTTCTTTGTTCTTATTGAATCTTGAACGGAGGTGGCGTGATGTGTGAAAGATTCTATTGTAATTAAAACTTTGGCCTCCAAATTGAGTAGAACCACAAGATATTGAAAATAGGGGTGTTATCCTGAATAGACTTTTGTCAGTTTGTTTTATTTTATTTTTTATTGTTATTATCTTTATTGAGTGTTTCGGTAGTATCTCTATCTAGATGGTCTATATGGTTCCAAAATTTCATATTCTAAACTAACAATGTAGGTTAGTATTATGAGGTCTAATGTGACTGATTCGAAAACCTATCTTTTGTGCTTCTACTTCCTTTTGCTTCATTAAGCTGATGTCTTCAGTGACCCTATTGTGTACTTGAGATGAACAATTTAGTTTATTGCGACTCTCTGGCTTCTGTGTTTGGCACTTATCATGGCTTCTTTTTTCTATTCAGTATCCGAATATTGGTTGTGGATCACGATTCATATTATTTGTTTCCTGTTAGAAGGTTATAGGACTTATTTTTTAAATGGAAAGAATCAAAGAACTAGTGAGCAATGCTTCACAATGTTTGTGTTAGATTCAGTATAGAAATAACTTTTATGTCTGTTCATTATTTCAGGGGAACGTTTTCCTCTAGAGGCGGAGGTCGTGGAGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTAATATCATAGTTTTATCAATTTTCCATTTGCAATGTCGTTTGGAGAAGCGTTTGCAAGAGTCTTTTGTTTGTACTGTATTTTATTTGGAATTGAACTTCTCGGTATTGAAGCTACTACCTAATTTAATTCTACTGCAAATTTTAACGTTTTACTAACCACTGGAACTGATTGCAATCTTTTCCTGAATATAATGTATGGATTGAGTTCGTGGATGATGAACTTACGATTGCCATATTTCTCTTACTGCCGAATTTCTGAGTGCTGCCTGTTTTGAACAGAATAAGACCATTGTCCGTAGGTCTTGTACTCATTTTTTTGGATTGGAGTCCTTTAAGGGGTTACTGGACTGGACTAGTGTTATATCCTTGTCATTTTTGCAATGAAGTTTTGGTTTCTTATGAAAAAGAACTATTGTCATATTGGTATGGTACTGTCG

mRNA sequence

CTAAAAACCCTACGCGAGATTTTGCAGCGAGCCTCCGGTAAAGAAAAGCTCCCTCTTTTTTCGCACAGCAAGAGCAGAAGAATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGCGGCAGAGGAGGTGGCCGAGGCGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTTGTTGAGGTTTCTACTTTCCTTCATGCTTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCCATTTATCTTCAAAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCGAATATCCGAATATTGGTTGTGGATCACGATTCATATTATTTGTTTCCTGTTAGAAGGGGAACGTTTTCCTCTAGAGGCGGAGGTCGTGGAGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTAATATCATAGTTTTATCAATTTTCCATTTGCAATGTCGTTTGGAGAAGCGTTTGCAAGAGTCTTTTGTTTGTACTGTATTTTATTTGGAATTGAACTTCTCGGTATTGAAGCTACTACCTAATTTAATTCTACTGCAAATTTTAACGTTTTACTAACCACTGGAACTGATTGCAATCTTTTCCTGAATATAATGTATGGATTGAGTTCGTGGATGATGAACTTACGATTGCCATATTTCTCTTACTGCCGAATTTCTGAGTGCTGCCTGTTTTGAACAGAATAAGACCATTGTCCGTAGGTCTTGTACTCATTTTTTTGGATTGGAGTCCTTTAAGGGGTTACTGGACTGGACTAGTGTTATATCCTTGTCATTTTTGCAATGAAGTTTTGGTTTCTTATGAAAAAGAACTATTGTCATATTGGTATGGTACTGTCG

Coding sequence (CDS)

ATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGCGGCAGAGGAGGTGGCCGAGGCGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTTGTTGAGGTTTCTACTTTCCTTCATGCTTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCCATTTATCTTCAAAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCGAATATCCGAATATTGGTTGTGGATCACGATTCATATTATTTGTTTCCTGTTAGAAGGGGAACGTTTTCCTCTAGAGGCGGAGGTCGTGGAGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGFRGRGRF

Homology

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BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-57
Identity = 158/217 (72.81%), Postives = 165/217 (76.04%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGRGGGRGGGGGRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GG GG  G GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGR 180
           ATSY+ GDKF+IDP KLLPLARFLPQP  +                G     G GRG  R
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQ--------------STGGRGGAGRGRGDSR 180

Query: 181 G-GRGGGGFRGRGGPRGGRGGPPRGGGRGGFRGRGRF 212
           G GRGG   RGRG PRGGR  PPRGG RG FRGRGRF
Sbjct: 181 GRGRGGSFSRGRGAPRGGR-FPPRGGSRGSFRGRGRF 202

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BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-48
Identity = 142/214 (66.36%), Postives = 149/214 (69.63%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGG FR        GRGG   GG GRG GR  GR GGG  DEGPPSEVVEV+TFL
Sbjct: 1   MRPPRGGGSFR--------GRGGRDNGGRGRGRGRGRGRFGGGNYDEGPPSEVVEVATFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+
Sbjct: 61  HACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRG---G 180
            GDKF+I P KLLPL+RFLPQP                  +G    RG GR   RG    
Sbjct: 121 QGDKFFISPEKLLPLSRFLPQP------------------KGQSGGRGEGRVPPRGRGPP 180

Query: 181 RGGGGFRGRGGPRG-GRGGPPRGGGRGGFRGRGR 211
           RG G FRGRG PRG  RG  PRGG RGGFRGRGR
Sbjct: 181 RGRGNFRGRGAPRGASRGFQPRGGPRGGFRGRGR 188

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BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot
Match: Q2HH48 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-38
Identity = 126/212 (59.43%), Postives = 140/212 (66.04%), Query Frame = 0


Query: 21  RGGGRG-GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFF 80
           RG  RG GGGG GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P F
Sbjct: 4   RGAPRGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHF 63

Query: 81  NAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFL 140
           NAPIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RFL
Sbjct: 64  NAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFL 123

Query: 141 PQPNIRILVVDHDSYYLFPVRRGTFS----------SRGGGRGGGRGG----RGGGGF-- 200
           P+P      V   S    P R G             SRGGGRGGGRGG    RGGGGF  
Sbjct: 124 PKPKPPPGTV---SKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGG 183

Query: 201 ---RGRGG-PRGGRGGPPRGGGRGGFRGRGRF 212
               GRGG PRGGRGG  RGGGRGG  GRGRF
Sbjct: 184 GFGGGRGGAPRGGRGGFSRGGGRGG--GRGRF 210

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BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot
Match: Q6FSB0 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-36
Identity = 114/202 (56.44%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 16  GGF-GGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNE 75
           GGF GGRGG RGG GGRGG R     GG    +GPP  V+E+  F+H CEGD V +  N 
Sbjct: 5   GGFRGGRGGSRGGFGGRGGAR-----GGRPIQQGPPDTVLEMGEFMHPCEGDVVCRSINT 64

Query: 76  KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLP 135
           K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF+IK  EG+ ATS+  GDKFYI P KLLP
Sbjct: 65  KVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKLLP 124

Query: 136 LARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRG--GGRGGGRGGRGG-----GGFRGRG 195
           + RF+P+P +       +         G   +RG  GGRGG RGG GG     GGF GRG
Sbjct: 125 IERFIPKPKVAGPPKPKNKKKRSGAPAGRGGARGGFGGRGGSRGGFGGRGGSRGGFGGRG 184

Query: 196 GPRGGRGGPPRGGGRGGFRGRG 210
           G RGG GG  RGG RGGF GRG
Sbjct: 185 GSRGGFGG--RGGSRGGFGGRG 199

[Close]

BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot
Match: Q757V8 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-35
Identity = 110/195 (56.41%), Postives = 128/195 (65.64%), Query Frame = 0


Query: 21  RGGGRGGGGGRGGGRFGGRGGGGFR--DEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPF 80
           RG  RGG GG  GG  GGRGG G R   +GPP  VVE+  F+H CEGD V +  N KIP+
Sbjct: 4   RGNSRGGRGGARGGSRGGRGGFGGRQFQQGPPDSVVEMGAFMHDCEGDIVCRSINTKIPY 63

Query: 81  FNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARF 140
           FNA IYL+NKT++GKVDEI GP+NE +F+IK  EG+ A+S+  GDKFYI P KLLP+ RF
Sbjct: 64  FNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERF 123

Query: 141 LPQPNIRILVVDHDSYYLFPV-RRGTFSSRGGGRGGGRGGRGG--GGFRGRGGPRGGRGG 200
           +P+P +                 RG F  RGG R GG GGRGG  GGF GRGG RGG GG
Sbjct: 124 IPKPKVAGPPKPKRKRAAGGAPGRGGFGGRGGSR-GGFGGRGGARGGFGGRGGARGGFGG 183

Query: 201 -PPRGGGRGGFRGRG 210
              RGG RGGF GRG
Sbjct: 184 FGGRGGSRGGFGGRG 197

[Close]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 189/212 (89.15%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           F  R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FAARGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 189/212 (89.15%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           F  R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FAARGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL
Match: A0A6J1GF54 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111453623 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.3e-79
Identity = 181/212 (85.38%), Postives = 187/212 (88.21%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGR    GRGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGR----GRGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP                  +G F++RGGGRGGGRGGRG 
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQP------------------KGQFAARGGGRGGGRGGRGA 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGR+
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRY 190

[Close]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL
Match: A0A5D3C949 (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00380 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78
Identity = 187/212 (88.21%), Postives = 188/212 (88.68%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRD   GGRGGGR GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRD---GGRGGGR-GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           FP R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FPSRGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL
Match: A0A0A0KWF0 (H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G192120 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78
Identity = 187/212 (88.21%), Postives = 188/212 (88.68%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRD   GGRGGGR GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRD---GGRGGGR-GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           FP R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FPSRGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of Lsi01G016660 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.9e-81
Identity = 189/212 (89.15%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           F  R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FAARGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Lsi01G016660 vs. NCBI nr
Match: KAG6595505.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308.9 bits (790), Expect = 3.3e-80
Identity = 188/212 (88.68%), Postives = 189/212 (89.15%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           F  R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FAARGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGP RGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPARGGGRGGGFRGRGRF 198

[Close]

BLAST of Lsi01G016660 vs. NCBI nr
Match: XP_022950557.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >KAG6603490.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.1 bits (780), Expect = 4.8e-79
Identity = 181/212 (85.38%), Postives = 187/212 (88.21%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGR    GRGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGR----GRGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP                  +G F++RGGGRGGGRGGRG 
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQP------------------KGQFAARGGGRGGGRGGRGA 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGR+
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRY 190

[Close]

BLAST of Lsi01G016660 vs. NCBI nr
Match: XP_004147534.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus] >XP_008441980.1 PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo] >XP_038881914.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Benincasa hispida] >KAA0060108.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa] >TYK08423.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.4e-78
Identity = 187/212 (88.21%), Postives = 188/212 (88.68%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRD   GGRGGGR GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRD---GGRGGGR-GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP  +           FP R G    RGGGRGGGRGGRGG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQ-----------FPSRGG---GRGGGRGGGRGGRGG 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGRF
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of Lsi01G016660 vs. NCBI nr
Match: KAG7033669.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 4.1e-78
Identity = 180/212 (84.91%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGR    GRGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGR----GRGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRGGRGG 180
           SGDKFYIDPAKLLPLARFLPQP                     F++RGGGRGGGRGGRG 
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKY-------------------FAARGGGRGGGRGGRGA 180

Query: 181 GGFRGRGGPRGGRGGPPRGGGR-GGFRGRGRF 212
           GGFRGRGGPRGGRGGPPRGGGR GGFRGRGR+
Sbjct: 181 GGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRY 189

[Close]

BLAST of Lsi01G016660 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 222.2 bits (565), Expect = 3.8e-58
Identity = 158/217 (72.81%), Postives = 165/217 (76.04%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGRGGGRGGGGGRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GG GG  G GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGR 180
           ATSY+ GDKF+IDP KLLPLARFLPQP  +                G     G GRG  R
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQ--------------STGGRGGAGRGRGDSR 180

Query: 181 G-GRGGGGFRGRGGPRGGRGGPPRGGGRGGFRGRGRF 212
           G GRGG   RGRG PRGGR  PPRGG RG FRGRGRF
Sbjct: 181 GRGRGGSFSRGRGAPRGGR-FPPRGGSRGSFRGRGRF 202

[Close]

BLAST of Lsi01G016660 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-49
Identity = 142/214 (66.36%), Postives = 149/214 (69.63%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGG FR        GRGG   GG GRG GR  GR GGG  DEGPPSEVVEV+TFL
Sbjct: 1   MRPPRGGGSFR--------GRGGRDNGGRGRGRGRGRGRFGGGNYDEGPPSEVVEVATFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+
Sbjct: 61  HACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPNIRILVVDHDSYYLFPVRRGTFSSRGGGRGGGRG---G 180
            GDKF+I P KLLPL+RFLPQP                  +G    RG GR   RG    
Sbjct: 121 QGDKFFISPEKLLPLSRFLPQP------------------KGQSGGRGEGRVPPRGRGPP 180

Query: 181 RGGGGFRGRGGPRG-GRGGPPRGGGRGGFRGRGR 211
           RG G FRGRG PRG  RG  PRGG RGGFRGRGR
Sbjct: 181 RGRGNFRGRGAPRGASRGFQPRGGPRGGFRGRGR 188

The following BLAST results are available for this feature:

BLAST of Lsi01G016660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	5.4e-57	72.81	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	1.6e-48	66.36	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q2HH48	2.5e-38	59.43	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
Q6FSB0	1.4e-36	56.44	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]
Q757V8	5.8e-35	56.41	H/ACA ribonucleoprotein complex subunit GAR1 OS=Ashbya gossypii (strain ATCC 108...	[more]

BLAST of Lsi01G016660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPE3	1.9e-81	89.15	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	1.9e-81	89.15	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1GF54	2.3e-79	85.38	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5D3C949	1.2e-78	88.21	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KWF0	1.2e-78	88.21	H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G1921...	[more]

BLAST of Lsi01G016660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925015.1	3.9e-81	89.15	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
KAG6595505.1	3.3e-80	88.68	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
XP_022950557.1	4.8e-79	85.38	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_004147534.1	2.4e-78	88.21	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativ...	[more]
KAG7033669.1	4.1e-78	84.91	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]

BLAST of Lsi01G016660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	3.8e-58	72.81	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	1.1e-49	66.36	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 44..139 e-value: 7.2E-35 score: 120.0
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 49..140 e-value: 5.0E-42 score: 143.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..205
None	No IPR available	PANTHER	PTHR23237:SF12	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 1..205
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 54..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016660.1	Lsi01G016660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0000454	snoRNA guided rRNA pseudouridine synthesis
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:1990381	ubiquitin-specific protease binding