Lsi01G009550.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009550.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein RER1
Location	chr01: 7761687 .. 7762493 (+)
Sequence length	624
RNA-Seq Expression	Lsi01G009550.1
Synteny	Lsi01G009550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGAAGAACGGCCAGTTGGTCAACCCTACAATGACAAATGGCAGAAGAGAGAATTATAGAGAGAAACATCGGAATTAGGAAGGGAAAAGTTCAAAGGAAATCTTGAGTATAGAAATTGCGCGACGACACCTGCTGATACTCGTGGTTCCTAATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGGTGCGTCCAAGTTTCCGATTGCTTACATTTTTCCCCCTCCCATTTTTTATTTGAGCCATTGCGGTGTCTTTCCATTGAATACATTCTGATATATATGTGAATCATGCGATCAGGAATTGGTAGTGCAATTATGAACTGTCGAGGTTTGCTTAAGCTTTAGGATATGAGTAATTGTTGGATTAGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

mRNA sequence

GTAAGAAGAACGGCCAGTTGGTCAACCCTACAATGACAAATGGCAGAAGAGAGAATTATAGAGAGAAACATCGGAATTAGGAAGGGAAAAGTTCAAAGGAAATCTTGAGTATAGAAATTGCGCGACGACACCTGCTGATACTCGTGGTTCCTAATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

Coding sequence (CDS)

ATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

Protein sequence

MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKFCVTSLNVNNWGRNSFDFSHIGRGFDYDWCWNL

Homology

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BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

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BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   + +H   R YQH LDK TP+  YRW     +  IY LRVY I+GFYI++YGLG
Sbjct: 10  SVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE   +  GP+LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKF 117

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-26
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   +  H   R YQ+ LDK TP+   RW        IY LRVY I GFYI+SYGLG
Sbjct: 10  SMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE L++  G  LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKF 116

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q5ZHM5 (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-25
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 33  YQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLLIGFLSPQVD 92
           YQ  LDK TPY   RW     ++FIY++RVYL++G+YIV+Y LGIY LNL I FLSP+VD
Sbjct: 29  YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query: 93  PEIL-DLHQGPALPLRESDEFRPFVRRLPEFKF 125
           P ++ D   GP+LP R+++EFRPF+RRLPEFKF
Sbjct: 89  PSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q9CQU3 (Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-25
Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 24  RWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLL 83
           R+   + + YQ  LDK TPY   RW     ++F+Y++RVYL++G+YIV+Y LGIY LNL 
Sbjct: 20  RFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLF 79

Query: 84  IGFLSPQVDPEIL-DLHQGPALPLRESDEFRPFVRRLPEFKF 125
           I FLSP+VDP ++ D   GP+LP ++++EFRPF+RRLPEFKF
Sbjct: 80  IAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1GCX4 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG AEDV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1IRU9 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.0e-57
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGL AAE VSSTTLF+RWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1KTW6 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.5e-56
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVG GAAEDVSSTTLF+RWSHA S RYQHLLD+C+PYIFYRW ACFFI  IYVL
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1HHE0 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.5e-56
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVG GAAEDVSSTTLF+RWSHA S RYQHLLD+C+PYIFYRW ACFFI  IYVL
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1BTU8 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVGLGAAED SSTT+ SRWSHAVSRRYQHLLD+CTP+IFYRW ACF I  IYVL
Sbjct: 1   MESVAAGVGLGAAEDFSSTTIVSRWSHAVSRRYQHLLDRCTPFIFYRWIACFAIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQ--GPALPLRESDEFRPFVRR 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEI DLH+  GPALP+ ESDEFRPFVRR
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEIPDLHEGTGPALPISESDEFRPFVRR 120

Query: 121 LPEFKF 125
           LPEFKF
Sbjct: 121 LPEFKF 126

[Close]

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_022949760.1 (protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucurbita moschata] >KAG6604161.1 Protein RER1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG AEDV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_023544323.1 (protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 115/124 (92.74%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGV LGAAEDV STTLFSRWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESDAAGVRLGAAEDVYSTTLFSRWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_022977598.1 (protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurbita maxima])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGL AAE VSSTTLF+RWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_038880923.1 (protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 115/124 (92.74%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           ME VAAGVGLGAAEDVSSTTLFSR SHAVSRRYQHLLD+CTPYIFYRW ACFFI  IYVL
Sbjct: 1   MEGVAAGVGLGAAEDVSSTTLFSRLSHAVSRRYQHLLDRCTPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDL++GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLNEGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: KAG7034324.1 (Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-56
Identity = 113/124 (91.13%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG A DV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAGDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

[Close]

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

[Close]

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

[Close]

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   + +H   R YQH LDK TP+  YRW     +  IY LRVY I+GFYI++YGLG
Sbjct: 10  SVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE   +  GP+LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKF 117

[Close]

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-27
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   +  H   R YQ+ LDK TP+   RW        IY LRVY I GFYI+SYGLG
Sbjct: 10  SMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE L++  G  LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKF 116

[Close]

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 23  SRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNL 82
           ++W    S+ +Q+ LD+  P I  RW        IY+ RVY + G++++SYGL  YILNL
Sbjct: 20  AKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNL 79

Query: 83  LIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           LIGFLSP+VDPE L+     +LP+ ESDE++PFVRRLPEFKF
Sbjct: 80  LIGFLSPKVDPE-LEALDPDSLPVDESDEYKPFVRRLPEFKF 120

The following BLAST results are available for this feature:

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZWI7	2.4e-30	54.10	Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1	[more]
O48670	1.6e-29	60.19	Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1	[more]
O48671	3.6e-26	59.26	Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2	[more]
Q5ZHM5	5.2e-25	60.22	Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1	[more]
Q9CQU3	6.8e-25	53.92	Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1	[more]

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCX4	4.1e-57	91.94	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1	[more]
A0A6J1IRU9	7.0e-57	91.94	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1	[more]
A0A6J1KTW6	3.5e-56	91.13	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1	[more]
A0A6J1HHE0	3.5e-56	91.13	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1	[more]
A0A6J1BTU8	1.6e-53	88.10	Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1	[more]

BLAST of Lsi01G009550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949760.1	8.5e-57	91.94	protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucu...	[more]
XP_023544323.1	1.1e-56	92.74	protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-li...	[more]
XP_022977598.1	1.5e-56	91.94	protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurb...	[more]
XP_038880923.1	2.5e-56	92.74	protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benin...	[more]
KAG7034324.1	5.5e-56	91.13	Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi01G009550.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23310.1	1.7e-31	54.10	Rer1 family protein	[more]
AT2G23310.2	1.7e-31	54.10	Rer1 family protein	[more]
AT4G39220.1	1.1e-30	60.19	Rer1 family protein	[more]
AT2G21600.1	2.6e-27	59.26	endoplasmatic reticulum retrieval protein 1B	[more]
AT2G18240.1	1.7e-23	51.96	Rer1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004932	Retrieval of early ER protein Rer1	PFAM	PF03248	Rer1	coord: 25..129 e-value: 6.9E-37 score: 126.8
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 13..126
None	No IPR available	PANTHER	PTHR10743:SF11	PROTEIN RER1C	coord: 13..126

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G009550	Lsi01G009550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G009550.1.exon.1	Lsi01G009550.1.exon.1	exon
Lsi01G009550.1.exon.2	Lsi01G009550.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G009550.1.five_prime_UTR.1	Lsi01G009550.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G009550.1.CDS.1	Lsi01G009550.1.CDS.1	CDS
Lsi01G009550.1.CDS.2	Lsi01G009550.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G009550.1	Lsi01G009550.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process	GO:0006621	protein retention in ER lumen
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030173	integral component of Golgi membrane