Lsi01G006340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G006340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	thioredoxin H-type-like
Location	chr01: 5114537 .. 5115623 (+)
RNA-Seq Expression	Lsi01G006340
Synteny	Lsi01G006340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGTCGGTTTTATCAGAGAATCGTAAAAGTAGAGACGGAAACGAGAAATGGCAGCAGCAGCAGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTTATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAAGAACTGGTATAACCTTTTCAATTTCCATTCCTTCACAATTCTTTTCTTTTGCTTTTTTTTTTCCTTCAATTGCTTTGATTTGATCCTCAGTAATATAATGTTTATTGATTTCAATGCATCGCCATTACTTGATTTGATCATCCGCACCACCCTCTTATGTGTATTTCAAAATGATATTGATATGCTCGAGCAACTTTTCCATTCTTTTTCTTTGCTTTTGTGGTATGGTAGATAAAGTAGTAATCAAAGTGTGAAATGTTTCGAATCTTTCGTGCTTCCTTTTCTTTATTCAACAATCAATACCATTTTTGTCTCCCACTTAATTGCTTTCCAGACCAAACAAATTGGATACCATCTGTAGTATATATTATTATATATTATATGTTTAGTACATTGATATGATTATACTAAGCCGATCCCAATCCACTCCTTGACTAAATTTCACCTCCAATCATTTTCTCACGAGAATAGAACCAATTTGCATGTAGTAAGGACTACCAATTAGTGAGTTCTTGACATTAAAACTAATGCAGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTACCTGGTGTCACATTTCTCAAGGTTGATGTGGATGATCTAGAGGTACTATAAATTACCATTTATAAATCTCTCTCTTGCTTTTGCTGAACATAAGTATAGTTCAACTGATTTAAATATATACCATGTCAGAGGAATCAATCCCATAACTTCAAAATGTTGTTAAAATGTGTTGATTGATGCAGTCGGTAGCAAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTTCTGAAAGAGGGAAGAATTGTGGATAAGGTGGTTGGAGCAAAGAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCTACTGCTTCTGCCTGA

mRNA sequence

CGTGTCGGTTTTATCAGAGAATCGTAAAAGTAGAGACGGAAACGAGAAATGGCAGCAGCAGCAGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTTATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTACCTGGTGTCACATTTCTCAAGGTTGATGTGGATGATCTAGAGTCGGTAGCAAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTTCTGAAAGAGGGAAGAATTGTGGATAAGGTGGTTGGAGCAAAGAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCTACTGCTTCTGCCTGA

Coding sequence (CDS)

ATGGCAGCAGCAGCAGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTTATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTACCTGGTGTCACATTTCTCAAGGTTGATGTGGATGATCTAGAGTCGGTAGCAAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTTCTGAAAGAGGGAAGAATTGTGGATAAGGTGGTTGGAGCAAAGAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCTACTGCTTCTGCCTGA

Protein sequence

MAAAAAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA

Homology

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BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.2e-46
Identity = 84/117 (71.79%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           AA EG+VI C T++ WN Q+QKGN ++ LIVVDFTASWCGPCRFIAPFL ELA+KLP VT
Sbjct: 2   AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 123
           FLKVDVD+L++VA +W VE+MPTFMFLKEG+I+DKVVGAKK+EL QT+ KHMA  ++
Sbjct: 62  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAST 118

[Close]

BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-43
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A+ EG+VI C T++ WN Q+QK N S+ L+VVDFTASWCGPCRFIAPF  +LA+KLP V 
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA 119
           FLKVD D+L+SVA DW ++AMPTFMFLKEG+I+DKVVGAKK+EL  T+ KH+A
Sbjct: 62  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-43
Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 7   AAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTF 66
           A EG+VI   T+D WN  +QKG   ++LIVVDFTASWCGPC+FIA F  ELA+K+P VTF
Sbjct: 2   AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTF 61

Query: 67  LKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           LKVDVD+L+SVA DW VEAMPTFMFLKEG+IVDKVVGAKK+EL QT+ KH+++T++A
Sbjct: 62  LKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTSTA 118

[Close]

BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 71/121 (58.68%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 4   AAAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPG 63
           A ++ EG+V  C  ++ WN   +KG  +++L+VVDFTASWCGPCRFIAP L ++A+K+P 
Sbjct: 6   ATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPH 65

Query: 64  VTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA-ATAS 123
           V FLKVDVD+L++V+ +W VEAMPTF+F+K+G+ VD+VVGAKKEEL QT+ KH A AT +
Sbjct: 66  VIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPATVT 125

[Close]

BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot
Match: Q39241 (Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-35
Identity = 64/117 (54.70%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 7   AAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTF 66
           A EG VI C T+++WN +++  N S++LIV+DFTASWC PCRFIAP   E+A+K   V F
Sbjct: 2   AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61

Query: 67  LKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
            K+DVD+L++VA+++ VEAMPTF+F+KEG I+D+VVGA K+E+++ + KH    ASA
Sbjct: 62  FKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118

[Close]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL
Match: A0A6J1IQD5 (thioredoxin H-type OS=Cucurbita maxima OX=3661 GN=LOC111477862 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.5e-57
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVIRC TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 123
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+S
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSS 118

[Close]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL
Match: A0A6J1GE02 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453323 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.5e-57
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVIRC TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGA+KEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGARKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL
Match: A0A6J1BTW6 (thioredoxin H-type OS=Momordica charantia OX=3673 GN=LOC111005317 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           AA+EGRVIRC T+D WN QIQKGN SQELIVVDFTASWCGPCRFI PFLDELA K P VT
Sbjct: 2   AASEGRVIRCNTVDAWNQQIQKGNGSQELIVVDFTASWCGPCRFIGPFLDELAHKCPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 123
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAATAS
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATAS 118

[Close]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL
Match: A0A6J1HER7 (thioredoxin H-type OS=Cucurbita moschata OX=3662 GN=LOC111463317 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 5   AAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGV 64
           AAAAEGRVIRC TID WN QIQKGNAS+ELIVVDF+ASWCGPCRFI PFL++LAQK P V
Sbjct: 2   AAAAEGRVIRCNTIDSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTV 61

Query: 65  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHM+ATASA
Sbjct: 62  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATASA 120

[Close]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL
Match: A0A6J1KSA6 (thioredoxin H-type-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496792 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.8e-54
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 5   AAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGV 64
           AAAAEGRVIRC TI  WN QIQKGNAS+ELIVVDF+ASWCGPCRFI PFL++LAQK P V
Sbjct: 2   AAAAEGRVIRCNTIGSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTV 61

Query: 65  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHM+ATASA
Sbjct: 62  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATASA 120

[Close]

BLAST of Lsi01G006340 vs. NCBI nr
Match: XP_038882042.1 (thioredoxin H-type [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 5.2e-57
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 4   AAAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPG 63
           AAAAAEGRVIRCTTID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPF+DELAQK P 
Sbjct: 2   AAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFVDELAQKFPS 61

Query: 64  VTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 123
           VTFLKVDVDDLESVAKDWGVEAMPTFMFLKEG IVD+VVGAKKEELHQ + KHMAATASA
Sbjct: 62  VTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGSIVDRVVGAKKEELHQRILKHMAATASA 121

[Close]

BLAST of Lsi01G006340 vs. NCBI nr
Match: KAG6603933.1 (hypothetical protein SDJN03_04542, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034113.1 hypothetical protein SDJN02_03840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 8.8e-57
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVIRC TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Lsi01G006340 vs. NCBI nr
Match: XP_022950147.1 (thioredoxin H-type-like [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-56
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVIRC TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGA+KEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGARKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Lsi01G006340 vs. NCBI nr
Match: XP_022977568.1 (thioredoxin H-type [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-56
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVIRC TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 123
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+S
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSS 118

[Close]

BLAST of Lsi01G006340 vs. NCBI nr
Match: XP_023543830.1 (thioredoxin H-type-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.3e-56
Identity = 110/118 (93.22%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A AEGRVI C TID WNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK P VT
Sbjct: 2   AVAEGRVIHCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
           FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Lsi01G006340 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 175.6 bits (444), Expect = 2.4e-44
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVT 65
           A+ EG+VI C T++ WN Q+QK N S+ L+VVDFTASWCGPCRFIAPF  +LA+KLP V 
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61

Query: 66  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA 119
           FLKVD D+L+SVA DW ++AMPTFMFLKEG+I+DKVVGAKK+EL  T+ KH+A
Sbjct: 62  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi01G006340 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-36
Identity = 64/117 (54.70%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 7   AAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTF 66
           A EG VI C T+++WN +++  N S++LIV+DFTASWC PCRFIAP   E+A+K   V F
Sbjct: 2   AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61

Query: 67  LKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
            K+DVD+L++VA+++ VEAMPTF+F+KEG I+D+VVGA K+E+++ + KH    ASA
Sbjct: 62  FKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118

[Close]

BLAST of Lsi01G006340 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-34
Identity = 66/118 (55.93%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 6   AAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQK-LPGV 65
           AA EG+VI C T D+W  Q+ K   S +LIV+DFTASWC PCR IAP  ++LA+K +   
Sbjct: 2   AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSA 61

Query: 66  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 123
            F KVDVD+L+SVAK++GVEAMPTF+F+K G +VDK+VGA KE+L   + KH   T +
Sbjct: 62  IFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119

[Close]

BLAST of Lsi01G006340 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-32
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 7   AAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTF 66
           AAEG VI C T++ W  +++  N S++LIV+DFTA+WC PCRFIAP   +LA+K   V F
Sbjct: 2   AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVF 61

Query: 67  LKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 124
            KVDVD+L +VA+++ V+AMPTF+F+KEG I + VVGA KEE+   + KH    A+A
Sbjct: 62  FKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAAA 118

[Close]

BLAST of Lsi01G006340 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-24
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 2   AAAAAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKL 61
           AA   +   RV++ ++   W     +   S +L+VVDF+ASWCGPCR I P +  +A K 
Sbjct: 17  AAGTESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKF 76

Query: 62  PGVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFK 116
             V F+K+DVD+L  VAK++ V AMPTF+ +K G+ +++++GAKK+EL + V K
Sbjct: 77  NDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130

The following BLAST results are available for this feature:

BLAST of Lsi01G006340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43636	7.2e-46	71.79	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
P29448	3.4e-43	68.14	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q07090	7.5e-43	69.23	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]
P29449	2.1e-37	58.68	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q39241	3.4e-35	54.70	Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1	[more]

BLAST of Lsi01G006340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQD5	9.5e-57	94.02	thioredoxin H-type OS=Cucurbita maxima OX=3661 GN=LOC111477862 PE=4 SV=1	[more]
A0A6J1GE02	9.5e-57	93.22	thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453323 PE=4 SV=1	[more]
A0A6J1BTW6	1.2e-54	90.60	thioredoxin H-type OS=Momordica charantia OX=3673 GN=LOC111005317 PE=4 SV=1	[more]
A0A6J1HER7	1.5e-54	89.92	thioredoxin H-type OS=Cucurbita moschata OX=3662 GN=LOC111463317 PE=4 SV=1	[more]
A0A6J1KSA6	9.8e-54	89.08	thioredoxin H-type-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496792 P...	[more]

BLAST of Lsi01G006340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882042.1	5.2e-57	92.50	thioredoxin H-type [Benincasa hispida]	[more]
KAG6603933.1	8.8e-57	94.07	hypothetical protein SDJN03_04542, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022950147.1	2.0e-56	93.22	thioredoxin H-type-like [Cucurbita moschata]	[more]
XP_022977568.1	2.0e-56	94.02	thioredoxin H-type [Cucurbita maxima]	[more]
XP_023543830.1	3.3e-56	93.22	thioredoxin H-type-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G006340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	2.4e-44	68.14	thioredoxin H-type 1	[more]
AT1G45145.1	2.4e-36	54.70	thioredoxin H-type 5	[more]
AT1G19730.1	2.2e-34	55.93	Thioredoxin superfamily protein	[more]
AT5G42980.1	8.0e-32	52.99	thioredoxin 3	[more]
AT5G39950.1	2.7e-24	42.98	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 43..52 score: 65.28 coord: 82..93 score: 40.28 coord: 35..43 score: 53.21
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 2..122 e-value: 1.5E-37 score: 130.3
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 7..121
None	No IPR available	PANTHER	PTHR10438:SF421	THIOREDOXIN H-TYPE-LIKE ISOFORM X1	coord: 7..121
None	No IPR available	CDD	cd02947	TRX_family	coord: 30..113 e-value: 1.48097E-34 score: 113.037
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 16..113 e-value: 4.5E-29 score: 100.5
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..119 score: 14.29544
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 36..54
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 10..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G006340.1	Lsi01G006340.1	mRNA