Sed0005153 (gene) Chayote v1

Overview


Name	Sed0005153
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG04: 46195646 .. 46198112 (-)
RNA-Seq Expression	Sed0005153
Synteny	Sed0005153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGAAATGACACTGAACCGGCCGAATCAAGATGAACTGATCATTAATTTTCTTTACCATTTCAACAATTCCACAATTTCCTCTTCAGATTTCTTCATCTTTTGGATCCAATTCTCTCCGTTTCTCTTCCTTCTCGAAGATTGTACCACTCGAAGTAAGTTTCCGATCGTTTCCTTTCCATTCTCTTTATGATTATGTTTCTCAATTTGGAAAACACGGAATTGTTTGTTTTAAGAGCATCAGGTTCTTCAATTTTTTGTCAATTTCATTGCTCGATTGTGTTACTGGATTTCATTTGCGCTTAATCTGGTTTGTTTGAATTCAATTTTTTTGTGTGTTTTATGGAATTTGTTGATGTTTTTGTTATTGGGGTGTTTTAGATTGTTGAAATTTCTCCATGTTGTTTGTTATTACTTCGTATCTGAACTGTGAAGATTTGGTAATTGTGCCCCCTTTTAGTTGTGGGGTTGGTTATTGCAGAAATCCATAATTGAGTTGTAGCTTTTAATCAGTGGTCATGATTCATGTGGGAAACTGCAATTTCATATAATTTAATATTTTCCTTCAATTTCATTAGTTGGAGATTCTGCTTCTGCTTCTGCTGATTCTTTTTTCTTCTTCTAGTTCACACTCTGATTGTTGAATTTTTCATTAAACTGCTGCATAGTTCGTGTTCTTTCCTGGTGCTTTATTCATGGTGTTCATGGTGTTCATGGTGTCGAAATATCTTGAACTATGTTGCGTTATGACTTGGTCGAAGTCTTGCATAGTTCGTGTTTTGTTTTCTTGTATTGAGCTTTTATGTATTTTGGGTATATGTTGTATTAGTCATCTATGAGAGTGCATCACATAAACTTTCTTAAAACAGACCAAACATTTTTACTCTTATCTCTTAAATAAAACGGTTTCTCTCTAAAGTGATGTTTGTGAACCATTTAAATCAGTATATTCTTTGTCTTGTATTTCTTTAATTCTTGATTGTTGTTCACAATACATGGTTCTTAGTTATTTATTGGCTTGTTTCAGGTCTTTTGTGAAGAAAGGCTTGCCCGCAACCTCTTTATTGTTGCGTTATTCCAATCAGTCTGCTTGTTTTTTCGGCCTGTACCGATCGAGTTTGAGAAGTTTTAAGAAGTTCAATTCAACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTTAATGTGCTTCTTGTAAACACTGCACTTTCCATTTCCATGCTCAAATACATTGTTCGTTTGATCCTTCACATCGTAGGAATCCGTCTCTCATTACCATCATCCTTGATCCCATCATCAGATTCCTTGGAAGATTCCTCCGAGTTGGGGGATTCCAGTTTTGGTTCCTCTTGGAGTCACATCGAGACGTTTCGGAACCGGCATCCAATGATGAGGTTTGATAAAGTACAGGGCTCCGGACGTTGTGAACATGACTGCTCGGTGTGCTTAACTCAGTTCGAACCTGAGTCGGAGATAAATCACTTGTCTTGTGGTCATCTTTTCCACACAGAATGCTTGGAGAAGTGGTTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTTTAATGTCCAAAGAAGAGAAATCCGCCTTTTGGTGAGCATTTTGTGTGCAAGAATCTAGTTAGGGAAAACTCATGTACAGTATAGTTTTAAAGATAATCGTGAGTGTTTTCTACCTTTTTTCGTGTATGGTGTTTGAAGTTTGATGTGTCTGACTGGTCTCAGAGACCAAAGTTTTGTCACTGTACAGACATGTTTATGAAGTTCTATGCTTTGTCTTGTGCCTTTAGCTTTGAGTTATTGCACTGTTTTTTCACTTTCTTTGTATATGGAGTTTACTCGGTGTATGCAACAGGTTTTTCAAGTTCTATCTGTTTGATAGTTGCATAGCAATTTAGTAAATTGCAGTTTGTAAACATGTTGGGAATTGCTCAAATCTTGGTGGGCACCTCTAAATCTTGCAAGTTTTTTTGGTGTCAAATACAGTTTGTCTATGGAGCATGATATTTGCTCGAGTATCACGTTCTTAAATCGTGAAATACTCACTGGTCTTCTTCGATCGATATGCTAAAATCAACCTGAAAGTGCCAACACCATATGTTCTGAGGCTTATACTACCTTCTCTCCCTTTCTCTTTGTGGAAAAGATCATTTAGCTTTGTAAAATCGAACATCAGAGTTTTTTCATTGAAATCGAGCAACTCCATCGACATGCTTGGACTAACATCCAACCCTCTCTTCATTTGTTCCAATTGGATAGAACCAGATTGAAATCCAAAATGAAGAGAGTTTGTACACCATGCTCAAATGCATTCTTTCATCCTCTGTAACAACCTGCTACCTGCAACTCTTTCTTCCTTTGTTCTTCCATGTAAAATAATTTAATTCAAAAGTCATCAATAAAATGCTCACATGATAAAATAAATATCTGTTATAGGAAGAGTTGAAAAG

mRNA sequence

GGCGAAATGACACTGAACCGGCCGAATCAAGATGAACTGATCATTAATTTTCTTTACCATTTCAACAATTCCACAATTTCCTCTTCAGATTTCTTCATCTTTTGGATCCAATTCTCTCCGTTTCTCTTCCTTCTCGAAGATTGTACCACTCGAAGTCTTTTGTGAAGAAAGGCTTGCCCGCAACCTCTTTATTGTTGCGTTATTCCAATCAGTCTGCTTGTTTTTTCGGCCTGTACCGATCGAGTTTGAGAAGTTTTAAGAAGTTCAATTCAACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTTAATGTGCTTCTTGTAAACACTGCACTTTCCATTTCCATGCTCAAATACATTGTTCGTTTGATCCTTCACATCGTAGGAATCCGTCTCTCATTACCATCATCCTTGATCCCATCATCAGATTCCTTGGAAGATTCCTCCGAGTTGGGGGATTCCAGTTTTGGTTCCTCTTGGAGTCACATCGAGACGTTTCGGAACCGGCATCCAATGATGAGGTTTGATAAAGTACAGGGCTCCGGACGTTGTGAACATGACTGCTCGGTGTGCTTAACTCAGTTCGAACCTGAGTCGGAGATAAATCACTTGTCTTGTGGTCATCTTTTCCACACAGAATGCTTGGAGAAGTGGTTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTTTAATGTCCAAAGAAGAGAAATCCGCCTTTTGGTGAGCATTTTGTGTGCAAGAATCTAGTTAGGGAAAACTCATGTACAGTATAGTTTTAAAGATAATCGTGAGTGTTTTCTACCTTTTTTCGTGTATGGTGTTTGAAGTTTGATGTGTCTGACTGGTCTCAGAGACCAAAGTTTTGTCACTGTACAGACATGTTTATGAAGTTCTATGCTTTGTCTTGTGCCTTTAGCTTTGAGTTATTGCACTGTTTTTTCACTTTCTTTGTATATGGAGTTTACTCGGTGTATGCAACAGGTTTTTCAAGTTCTATCTGTTTGATAGTTGCATAGCAATTTAGTAAATTGCAGTTTGTAAACATGTTGGGAATTGCTCAAATCTTGGTGGGCACCTCTAAATCTTGCAAGTTTTTTTGGTGTCAAATACAGTTTGTCTATGGAGCATGATATTTGCTCGAGTATCACGTTCTTAAATCGTGAAATACTCACTGGTCTTCTTCGATCGATATGCTAAAATCAACCTGAAAGTGCCAACACCATATGTTCTGAGGCTTATACTACCTTCTCTCCCTTTCTCTTTGTGGAAAAGATCATTTAGCTTTGTAAAATCGAACATCAGAGTTTTTTCATTGAAATCGAGCAACTCCATCGACATGCTTGGACTAACATCCAACCCTCTCTTCATTTGTTCCAATTGGATAGAACCAGATTGAAATCCAAAATGAAGAGAGTTTGTACACCATGCTCAAATGCATTCTTTCATCCTCTGTAACAACCTGCTACCTGCAACTCTTTCTTCCTTTGTTCTTCCATGTAAAATAATTTAATTCAAAAGTCATCAATAAAATGCTCACATGATAAAATAAATATCTGTTATAGGAAGAGTTGAAAAG

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTTAATGTGCTTCTTGTAAACACTGCACTTTCCATTTCCATGCTCAAATACATTGTTCGTTTGATCCTTCACATCGTAGGAATCCGTCTCTCATTACCATCATCCTTGATCCCATCATCAGATTCCTTGGAAGATTCCTCCGAGTTGGGGGATTCCAGTTTTGGTTCCTCTTGGAGTCACATCGAGACGTTTCGGAACCGGCATCCAATGATGAGGTTTGATAAAGTACAGGGCTCCGGACGTTGTGAACATGACTGCTCGGTGTGCTTAACTCAGTTCGAACCTGAGTCGGAGATAAATCACTTGTCTTGTGGTCATCTTTTCCACACAGAATGCTTGGAGAAGTGGTTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTTTAATGTCCAAAGAAGAGAAATCCGCCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSSELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW

Homology

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BLAST of Sed0005153 vs. NCBI nr
Match: KAG6572211.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011849.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 130/154 (84.42%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ K IVRLILHIVGIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. NCBI nr
Match: XP_022969282.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 6.6e-70
Identity = 130/154 (84.42%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ K IVRLILHIVGIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. NCBI nr
Match: XP_023554631.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 129/154 (83.77%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ K IVRLILHI+GIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. NCBI nr
Match: XP_022952716.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952718.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 2.5e-69
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ + IVRLILHI+GIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. NCBI nr
Match: XP_022135697.1 (probable E3 ubiquitin-protein ligase XERICO [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 8.1e-68
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLNVL+VNTALSISMLK IVRLIL IVGIRLS PSSL+PSSD +E+ S
Sbjct: 1   MGLSSLPAPSEGVLNVLVVNTALSISMLKCIVRLILQIVGIRLSSPSSLVPSSDFIENPS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSSFGSSWS+ E FRNR+P +RFD V GS R EHDCSVCL+QFEPESEINHLSCGHL
Sbjct: 61  ELGDSSFGSSWSYTEAFRNRYPTIRFDTVHGSKRLEHDCSVCLSQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWN TCPLCRTPLMS+EEK  FW
Sbjct: 121 FHTECLEKWLDYWNSTCPLCRTPLMSEEEKLCFW 154

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BLAST of Sed0005153 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-38
Identity = 86/150 (57.33%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLP PSEG+L V+LVNTALSIS++K IVR  L IVGI LS PSS  PSS ++   +
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  ELGDSSFG----SSWSHIETFRNRHPMMRFDKV-QGSGRCEHDCSVCLTQFEPESEINHL 120
                SF        S++E FRNR P +RF+ + +   + +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Sed0005153 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 82  PMMRFDKVQGSGR-CEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYWNITCPL 141
           P+++F+++  SG     +C+VCL +FE E EI  L +C H+FH  CL++W+D+   TCPL
Sbjct: 76  PVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCPL 135

Query: 142 CRTPLMSKEEKSAF 154
           CRTP +  E +  F
Sbjct: 136 CRTPFVPDEMQEEF 149

[Close]

BLAST of Sed0005153 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-11
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 72  SHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLD 131
           S++    ++  + R    + S     DC VCL++ +   E+  L C H+FH +CLE WL 
Sbjct: 47  SNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQ 106

Query: 132 YWNITCPLCRTPLM 146
           + N  CPLCR+PL+
Sbjct: 107 HLNFNCPLCRSPLL 120

[Close]

BLAST of Sed0005153 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-09
Identity = 38/129 (29.46%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 22  ALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSSELGDSSFGSSWSHIETFRNRH 81
           ++ + +L  +   I H+    L L S   P       +  + D S  S  ++I    ++ 
Sbjct: 14  SIPLMLLSLLAVFINHLRSFLLRLTSKSNP-------NLPVDDVSIASGLANIIVLADQL 73

Query: 82  PMMRFDKVQ--GSGRCEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPL 141
            + R    +    G    DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPL
Sbjct: 74  SLNRLFSYRCGDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPL 133

Query: 142 CRTPLMSKE 149
           CR+ L+S +
Sbjct: 134 CRSALVSDD 135

[Close]

BLAST of Sed0005153 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 68  GSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHL-SCGHLFHTECL 127
           G + +H +   N   +M  DK +    C   C +CL +FE E  + HL  C HLFH  C+
Sbjct: 34  GDADAHDDDGYNLVGVMFGDKEKEEEIC---CPICLVEFEAEDAVTHLPRCAHLFHINCI 93

Query: 128 EKWLDYWNITCPLCRT 143
           E WL   ++TCPLCR+
Sbjct: 94  EPWLLRGHLTCPLCRS 106

[Close]

BLAST of Sed0005153 vs. ExPASy TrEMBL
Match: A0A6J1HVX6 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111468336 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 130/154 (84.42%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ K IVRLILHIVGIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. ExPASy TrEMBL
Match: A0A6J1GLE2 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111455329 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+ + IVRLILHI+GIR S PSSL+PS+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSWS++E FRNR+P +RFDKVQGS R EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. ExPASy TrEMBL
Match: A0A6J1C3G2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111007592 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLNVL+VNTALSISMLK IVRLIL IVGIRLS PSSL+PSSD +E+ S
Sbjct: 1   MGLSSLPAPSEGVLNVLVVNTALSISMLKCIVRLILQIVGIRLSSPSSLVPSSDFIENPS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSSFGSSWS+ E FRNR+P +RFD V GS R EHDCSVCL+QFEPESEINHLSCGHL
Sbjct: 61  ELGDSSFGSSWSYTEAFRNRYPTIRFDTVHGSKRLEHDCSVCLSQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWN TCPLCRTPLMS+EEK  FW
Sbjct: 121 FHTECLEKWLDYWNSTCPLCRTPLMSEEEKLCFW 154

[Close]

BLAST of Sed0005153 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLNV+LVNTALSISMLK IVRLILH+VGIRLS PSS++ S+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSW+++E FRNR+P +RFDKV+ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLPAPSEGVLNV+LVNTALSISMLK IVRLILH+VGIRLS PSS++ S+DS E+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDS+FGSSW+++E FRNR+P +RFDKV+ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 155
           FHTECLEKWLDYWNITCPLCRTPLMS+EEKS FW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Sed0005153 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-39
Identity = 86/150 (57.33%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLP PSEG+L V+LVNTALSIS++K IVR  L IVGI LS PSS  PSS ++   +
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  ELGDSSFG----SSWSHIETFRNRHPMMRFDKV-QGSGRCEHDCSVCLTQFEPESEINHL 120
                SF        S++E FRNR P +RF+ + +   + +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Sed0005153 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-39
Identity = 86/150 (57.33%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MGLSSLP PSEG+L V+LVNTALSIS++K IVR  L IVGI LS PSS  PSS ++   +
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  ELGDSSFG----SSWSHIETFRNRHPMMRFDKV-QGSGRCEHDCSVCLTQFEPESEINHL 120
                SF        S++E FRNR P +RF+ + +   + +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Sed0005153 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSS 60
           MG+S  P  SEGV+ +L++NT +S+S++K +VR ++++V       SS    + + ED  
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV-------SSETNEARNKEDDQ 60

Query: 61  ELGDSSFGS--SWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHL-SC 120
           +  DS      S +H E+          ++   + R   DC VCL  F+ E E++ L SC
Sbjct: 61  DHEDSKRRRRISITHFESLCE-------NRGSRNEREAMDCCVCLCGFKEEEEVSELVSC 120

Query: 121 GHLFHTECLEKWLDYWNITCPLCRTPL 145
            H FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 KHYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Sed0005153 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 82  PMMRFDKVQGSGR-CEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYWNITCPL 141
           P+++F+++  SG     +C+VCL +FE E EI  L +C H+FH  CL++W+D+   TCPL
Sbjct: 76  PVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCPL 135

Query: 142 CRTPLMSKEEKSAF 154
           CRTP +  E +  F
Sbjct: 136 CRTPFVPDEMQEEF 149

[Close]

BLAST of Sed0005153 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-12
Identity = 50/149 (33.56%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 33  RLILHIVGIRLSLPSSLIPSSD---SLEDSSELGDSSFGSSW---SHIETFRNRH----- 92
           R+ LH++ + L L  +LI +      L D  E    S  SSW    ++ T  + H     
Sbjct: 14  RIFLHLLSL-LGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYMSTAAHHHQESSF 73

Query: 93  -------------PMMRFDKV--QGSGRCEHDCSVCLTQFEPESEINHL-SCGHLFHTEC 152
                        P++RF ++   G G     C+VCL +FE + EI  L +C H+FH  C
Sbjct: 74  FFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSC 133

Query: 153 LEKW-LDYWNITCPLCRTPLMSKEEKSAF 154
           L++W + Y  +TCPLCRTP +S E + AF
Sbjct: 134 LDRWMMGYNQMTCPLCRTPFISDELQVAF 161

The following BLAST results are available for this feature:

BLAST of Sed0005153 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572211.1	5.1e-70	84.42	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022969282.1	6.6e-70	84.42	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 p...	[more]
XP_023554631.1	1.1e-69	83.77	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]	[more]
XP_022952716.1	2.5e-69	83.12	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1...	[more]
XP_022135697.1	8.1e-68	84.42	probable E3 ubiquitin-protein ligase XERICO [Momordica charantia]	[more]

BLAST of Sed0005153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	4.1e-38	57.33	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	2.7e-13	43.24	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZU51	9.5e-11	36.49	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	6.8e-09	29.46	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9SZL4	1.2e-08	39.47	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]

BLAST of Sed0005153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVX6	3.2e-70	84.42	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GLE2	1.2e-69	83.12	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1C3G2	3.9e-68	84.42	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S4E4A9	5.1e-68	83.12	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	5.1e-68	83.12	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]

BLAST of Sed0005153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	2.9e-39	57.33	RING/U-box superfamily protein	[more]
AT2G04240.2	2.9e-39	57.33	RING/U-box superfamily protein	[more]
AT1G67856.1	1.9e-14	35.37	RING/U-box superfamily protein	[more]
AT3G61460.1	1.9e-14	43.24	brassinosteroid-responsive RING-H2	[more]
AT5G41400.1	3.9e-12	33.56	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 1.1E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 3.5E-11 score: 43.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.99088
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 68..146 e-value: 4.2E-17 score: 63.6
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..152
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..152
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 90..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005153.1	Sed0005153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane