Lcy13g006950 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006950
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr13: 6263880 .. 6264433 (-)
RNA-Seq Expression	Lcy13g006950
Synteny	Lcy13g006950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTCATCTAGCTCTAATATAATGAAAAAAAATTTGGAACAATCTGTGGAAACTAAAAATTCCCTCTAAAGTGAAACTCTTTAAATAATACTCTTCCTAACAAAGAAAATTAGAACCACTGAGTAATTAATACTCCTAATTTGTGCCCTATGTGTAATGTTTTTCTGGAGAATACAGATCATTGTCTTTTTTTCTTATAACTGCACTAAAGAAATGTGGAAACTTACATATAATTATGTTTTTTTGGACAAGGATTTCCGTGGAAGCTTTGTGGACATATGGATTTTGATCGACTCAAGCTTGTCTATGGAAGCTCATGGATTGGTAGCAACTACTTGTTGGTCTATCTGGAATGATAGGAACAAGATCATCCATGGTGAAGCGATTCCAACAATTCAAAATAGGAGCAAATGGATAATAGATTACCTTGAATCATTTTTGCGAGCAAACTCTAGAAGGTCGTCGAATCAGCCGAACAGTCAACATTCTGGGCTTCGTTCGTCAAACACGGTTGATCACTGGTACCCTCCAAATAGGGCCGTTTTTTAA

mRNA sequence

ATGGATTTCCGTGGAAGCTTTGTGGACATATGGATTTTGATCGACTCAAGCTTGTCTATGGAAGCTCATGGATTGGTAGCAACTACTTGTTGGTCTATCTGGAATGATAGGAACAAGATCATCCATGGTGAAGCGATTCCAACAATTCAAAATAGGAGCAAATGGATAATAGATTACCTTGAATCATTTTTGCGAGCAAACTCTAGAAGGTCGTCGAATCAGCCGAACAGTCAACATTCTGGGCTTCGTTCGTCAAACACGGTTGATCACTGGTACCCTCCAAATAGGGCCGTTTTTTAA

Coding sequence (CDS)

ATGGATTTCCGTGGAAGCTTTGTGGACATATGGATTTTGATCGACTCAAGCTTGTCTATGGAAGCTCATGGATTGGTAGCAACTACTTGTTGGTCTATCTGGAATGATAGGAACAAGATCATCCATGGTGAAGCGATTCCAACAATTCAAAATAGGAGCAAATGGATAATAGATTACCTTGAATCATTTTTGCGAGCAAACTCTAGAAGGTCGTCGAATCAGCCGAACAGTCAACATTCTGGGCTTCGTTCGTCAAACACGGTTGATCACTGGTACCCTCCAAATAGGGCCGTTTTTTAA

Protein sequence

MDFRGSFVDIWILIDSSLSMEAHGLVATTCWSIWNDRNKIIHGEAIPTIQNRSKWIIDYLESFLRANSRRSSNQPNSQHSGLRSSNTVDHWYPPNRAVF

Homology

[Close]

BLAST of Lcy13g006950 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 6    SFVDIWILIDSSLSMEAHGLVATTCWSIWNDRNKIIHGEAIPTIQNRSKWIIDYLESFLR 65
            SF+++W  +   L  +   L A T W IWNDRN +IHG+ +  ++ + +W+  +L+S  +
Sbjct: 1214 SFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQ 1273

Query: 66   ANSRRSSNQPNSQHSGLRSSNTVDHWYP 94
            A     S +  S H  +     V +W P
Sbjct: 1274 AQMSNYSPRTQSNHRPV-----VQYWRP 1296

[Close]

BLAST of Lcy13g006950 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-06
Identity = 32/91 (35.16%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 6   SFVDIWILIDSSLSMEAHGLVATTCWSIWNDRNKIIHGEAIPTIQNRSKWIIDYLESFLR 65
           SF+DIW+L+   L+ +   L A T W+IW DRN   HG ++ T   R  WI  Y +++ +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 66  A--NSRRSSNQPNSQHSGLRSSNTVDHWYPP 95
           A  N R S  Q +      R       W PP
Sbjct: 95  AQENKRISPQQSSVPPPSCR-------WLPP 118

[Close]

BLAST of Lcy13g006950 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 6    SFVDIWILIDSSLSMEAHGLVATTCWSIWNDRNKIIHGEAIPTIQNRSKWIIDYLESFLR 65
            SF+++W  +   L  +   L A T W IWNDRN +IHG+ +  ++ + +W+  +L+S  +
Sbjct: 1214 SFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQ 1273

Query: 66   ANSRRSSNQPNSQHSGLRSSNTVDHWYP 94
            A     S +  S H  +     V +W P
Sbjct: 1274 AQMSNYSPRTQSNHRPV-----VQYWRP 1296

[Close]

BLAST of Lcy13g006950 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 32/91 (35.16%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 6   SFVDIWILIDSSLSMEAHGLVATTCWSIWNDRNKIIHGEAIPTIQNRSKWIIDYLESFLR 65
           SF+DIW+L+   L+ +   L A T W+IW DRN   HG ++ T   R  WI  Y +++ +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 66  A--NSRRSSNQPNSQHSGLRSSNTVDHWYPP 95
           A  N R S  Q +      R       W PP
Sbjct: 95  AQENKRISPQQSSVPPPSCR-------WLPP 118

The following BLAST results are available for this feature:

BLAST of Lcy13g006950 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g006950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	6.1e-06	30.68	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BQ49	8.0e-06	35.16	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of Lcy13g006950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	1.3e-05	30.68	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022131661.1	1.7e-05	35.16	uncharacterized protein LOC111004786 [Momordica charantia]	[more]

BLAST of Lcy13g006950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006950.1	Lcy13g006950.1	mRNA