Tan0006249 (gene) Snake gourd v1

Overview


Name	Tan0006249
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 42976820 .. 42977342 (-)
RNA-Seq Expression	Tan0006249
Synteny	Tan0006249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAAATTGGAACGGTTGAAGTCACTGAGACTATCACAAACGAAGGTGAGAGAAGCAGAAAGAAACACAGAGAAATTGATGAAGGAAATAGATTGTATAAGTAGGGTTTTTGAAGATGAGGCCAGATTGATCTTTATATCTCCAAAATTTTTCTTCCTACTTCGTTTCGGCAAATAGTAATTAACAAATACTTCATACCTCCAGTTTCTTCAACATTCATTCCCTTTTACTCATATAATTGATCCTGTTTCACTAAAAAAAATATAAAGCTTGTTACAAATACAATTTGTAAAGGGCTGAAAACTAGAATTCATCCGAACCAAAATATGAATTAGATTAAAATTATGGTAAGAATTAGCTTCATCACAAATAGGGGAGTATATGCATGGGTTGGGCTTTTCAAGATGAGGCCATATTGATCTTCTGTTACAAACAATGGTTGAAATTGATGGAGCTTGGTGTTTCAAAGAAGAAGAAGAAGAAGCTGATAGAAGAAGAAGAAGGTAATAGAAATTGA

mRNA sequence

ATGGAGGAGAAATTGGAACGGTTGAAGTCACTGAGACTATCACAAACGAAGGTGAGAGAAGCAGAAAGAAACACAGAGAAATTGATGAAGGAAATAGATTGTATAAGTAGGGCCATATTGATCTTCTGTTACAAACAATGGTTGAAATTGATGGAGCTTGGTGTTTCAAAGAAGAAGAAGAAGAAGCTGATAGAAGAAGAAGAAGGTAATAGAAATTGA

Coding sequence (CDS)

ATGGAGGAGAAATTGGAACGGTTGAAGTCACTGAGACTATCACAAACGAAGGTGAGAGAAGCAGAAAGAAACACAGAGAAATTGATGAAGGAAATAGATTGTATAAGTAGGGCCATATTGATCTTCTGTTACAAACAATGGTTGAAATTGATGGAGCTTGGTGTTTCAAAGAAGAAGAAGAAGAAGCTGATAGAAGAAGAAGAAGGTAATAGAAATTGA

Protein sequence

MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAILIFCYKQWLKLMELGVSKKKKKKLIEEEEGNRN

Homology

[Close]

BLAST of Tan0006249 vs. NCBI nr
Match: KAG6600670.1 (hypothetical protein SDJN03_05903, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 76  MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 135

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 136 SKLKKRKEEEEDNGNGN 152

[Close]

BLAST of Tan0006249 vs. NCBI nr
Match: XP_022943244.1 (uncharacterized protein LOC111448032 [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 76  MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 135

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 136 SKLKKRKEEEEDNGNGN 152

[Close]

BLAST of Tan0006249 vs. NCBI nr
Match: XP_022970087.1 (uncharacterized protein LOC111469054 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 118 MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 177

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 178 SKLKKRKEEEEDNGNGN 194

[Close]

BLAST of Tan0006249 vs. NCBI nr
Match: KAG7031309.1 (hypothetical protein SDJN02_05349, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 76  MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 135

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 136 SKLKKRKEEEEDNGNGN 152

[Close]

BLAST of Tan0006249 vs. NCBI nr
Match: XP_038904267.1 (uncharacterized protein LOC120090620 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      L+FCY+Q +KL++L V
Sbjct: 43  MEEKLELLKALRLSQTRAREAERKAAKLMEEKDCISRAFEDEARLMFCYRQSVKLLDLRV 102

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK +K++  EEEE  R+
Sbjct: 103 SKLQKEEEEEEEEEERD 119

[Close]

BLAST of Tan0006249 vs. ExPASy TrEMBL
Match: A0A6J1HY55 (uncharacterized protein LOC111469054 OS=Cucurbita maxima OX=3661 GN=LOC111469054 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 118 MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 177

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 178 SKLKKRKEEEEDNGNGN 194

[Close]

BLAST of Tan0006249 vs. ExPASy TrEMBL
Match: A0A6J1FTQ9 (uncharacterized protein LOC111448032 OS=Cucurbita moschata OX=3662 GN=LOC111448032 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEKLE LK+LRLSQT+ REAER   KLM+E DCISRA      LIFCY+Q LKLMEL V
Sbjct: 76  MEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 135

Query: 61  SKKKKKKLIEEEEGNRN 73
           SK KK+K  EE+ GN N
Sbjct: 136 SKLKKRKEEEEDNGNGN 152

[Close]

BLAST of Tan0006249 vs. ExPASy TrEMBL
Match: A0A0A0KZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097690 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEK+E LK+LRLSQT+ REAER   KLM+E DCISRA      ++FCY+Q LKL+EL V
Sbjct: 42  MEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRV 101

Query: 61  SKKKKKKLIEEEE 69
            K +K++  EEEE
Sbjct: 102 FKLQKQEEEEEEE 114

[Close]

BLAST of Tan0006249 vs. ExPASy TrEMBL
Match: A0A5D3BEN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00050 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEK+E LK+LRLSQT+ REAER   KLM+E DCISRA      L+FCY+Q LKL+EL V
Sbjct: 42  MEEKIELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLELRV 101

Query: 61  SKKKKKKLIEEEE 69
            K +K+++ E EE
Sbjct: 102 CKLQKQEVEEVEE 114

[Close]

BLAST of Tan0006249 vs. ExPASy TrEMBL
Match: A0A1S3C2P7 (uncharacterized protein LOC103495794 OS=Cucumis melo OX=3656 GN=LOC103495794 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1   MEEKLERLKSLRLSQTKVREAERNTEKLMKEIDCISRAI-----LIFCYKQWLKLMELGV 60
           MEEK+E LK+LRLSQT+ REAER   KLM+E DCISRA      L+FCY+Q LKL+EL V
Sbjct: 42  MEEKIELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLELRV 101

Query: 61  SKKKKKKLIEEEE 69
            K +K+++ E EE
Sbjct: 102 CKLQKQEVEEVEE 114

The following BLAST results are available for this feature:

BLAST of Tan0006249 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006249 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600670.1	2.7e-13	67.53	hypothetical protein SDJN03_05903, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022943244.1	2.7e-13	67.53	uncharacterized protein LOC111448032 [Cucurbita moschata]	[more]
XP_022970087.1	2.7e-13	67.53	uncharacterized protein LOC111469054 [Cucurbita maxima]	[more]
KAG7031309.1	2.7e-13	67.53	hypothetical protein SDJN02_05349, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038904267.1	2.1e-10	59.74	uncharacterized protein LOC120090620 [Benincasa hispida]	[more]

BLAST of Tan0006249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY55	1.3e-13	67.53	uncharacterized protein LOC111469054 OS=Cucurbita maxima OX=3661 GN=LOC111469054...	[more]
A0A6J1FTQ9	1.3e-13	67.53	uncharacterized protein LOC111448032 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A0A0KZ57	3.9e-10	60.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097690 PE=4 SV=1	[more]
A0A5D3BEN7	6.6e-10	60.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C2P7	6.6e-10	60.27	uncharacterized protein LOC103495794 OS=Cucumis melo OX=3656 GN=LOC103495794 PE=...	[more]

BLAST of Tan0006249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006249.1	Tan0006249.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane