Lcy11g010700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotrans_gag domain-containing protein
Location	Chr11: 12359705 .. 12361067 (-)
RNA-Seq Expression	Lcy11g010700
Synteny	Lcy11g010700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAACAAAATCAAGCTTCTAGCTCCTCAACTTCAGGTACATCTTTTGATGAGGCACTAAAGAAACTTACTGACAGCTCTTTGCAGTTCCAGCAAGAGACCAGGAACGTCATTCAGAATTTGGGAAACAAAATCACCCAACTGGCAACCCAAATCAGTAAGATGAACAATAAAAGCTTTGGTAAGTTGTCTGCCCAACCTGAGGTAAATCCTAAGGTAAATGTGAGTGCAATGTGGTGTGGAGTTGCCACACCTGACTATCCCCCAGGGTTCCCTACTGTCTCTGATAAGTTTTATGTTTCTTCTGGCAAATTTTCTTCTTTAAATTTAAATGATAATGATTCTTTTCTTACTTCACCTGTGAACTTCACTGAGCCTGCTACTCCAAGTGTGCAGGATGATTTAGATTGTTTTAGGCGAGTCAAGGTGAACATTCCGTTGCTTGAGGCAATCCTGAAAATCCCAGCCTATGCTGAGTTCTTAAAAACTTGGTATGAAGGTAAGAAAAAGTCACCAGGTAAAGAAGAGGTTAGTGAAAATGTAAGTGCATTACTATCTGAAGACTTACCTGTAAAATATTCTGATCCTGGCATGTTTACTTTACCGTGTATGATCGGAGATTGCAAGATAAAATATGCCATGTTAGATCTAGGAGCATCGATAAATGTTATGCCTGTGTCTGTTTATAAAAGATTGAACTTGACAAATATTAAAACATCTGGCATAGTCATTCAGCTAGCAGATAAGTCATGCATTAAACCTCTAGGAATAGTTGAAAATGTTTTAGTTAGGGTGGAGGATTTGGTTTTTCCTGCCGACTTCTATGTTTTAGATACACCTAATTCTGATTACAATCCATCTTCTGCTACAATACTTATTGGTCGTCCCTTTATGTAGACTGCCAAAACAGTTATTGATGTAGATGAGAGTGTTGAATTAGTAGGATTTCAGGATAAAACCCTGTACTTTAAAATTTTTTATGACATTGAAAATCCTCATGCATCTTCTGTTGAGTACTACATGCTTGAACCTGACCTAGTGAATGATCGCACTTTAAATTCCAAATCATGCATGATTAATGATAATGAGATGCATTCTTTTGTTGTTAGATGCCCTGACTTAGATGGAGAACTAATAGATGTAGTTGATGAGCACCAGATAACCCTTACTGATAAATCTGGTGGAGTCACCAAGTGCTCATCTTCTAGGATCAGGGCCGAGCGAATTTTTTGTCAGCCAACCTCTGCTTCCAATATTTTTTTCTACTTCTACTAATTCTTCTTTACAGGCCCTGAAATTACTAAAACAAGAATTTTCCAAAAACAATGTATTTTGGACCTGTGGAGAGAAGCCTCCATAA

mRNA sequence

ATGTTCAAACAAAATCAAGCTTCTAGCTCCTCAACTTCAGGTACATCTTTTGATGAGGCACTAAAGAAACTTACTGACAGCTCTTTGCAGTTCCAGCAAGAGACCAGGAACGTCATTCAGAATTTGGGAAACAAAATCACCCAACTGGCAACCCAAATCAGTAAGATGAACAATAAAAGCTTTGGTAAGTTGTCTGCCCAACCTGAGGTAAATCCTAAGGTAAATGTGAGTGCAATGTGGTGTGGAGTTGCCACACCTGACTATCCCCCAGGGTTCCCTACTGTCTCTGATAAGTTTTATGTTTCTTCTGGCAAATTTTCTTCTTTAAATTTAAATGATAATGATTCTTTTCTTACTTCACCTGTGAACTTCACTGAGCCTGCTACTCCAAGTGTGCAGGATGATTTAGATTGTTTTAGGCGAGTCAAGGCCCTGAAATTACTAAAACAAGAATTTTCCAAAAACAATGTATTTTGGACCTGTGGAGAGAAGCCTCCATAA

Coding sequence (CDS)

ATGTTCAAACAAAATCAAGCTTCTAGCTCCTCAACTTCAGGTACATCTTTTGATGAGGCACTAAAGAAACTTACTGACAGCTCTTTGCAGTTCCAGCAAGAGACCAGGAACGTCATTCAGAATTTGGGAAACAAAATCACCCAACTGGCAACCCAAATCAGTAAGATGAACAATAAAAGCTTTGGTAAGTTGTCTGCCCAACCTGAGGTAAATCCTAAGGTAAATGTGAGTGCAATGTGGTGTGGAGTTGCCACACCTGACTATCCCCCAGGGTTCCCTACTGTCTCTGATAAGTTTTATGTTTCTTCTGGCAAATTTTCTTCTTTAAATTTAAATGATAATGATTCTTTTCTTACTTCACCTGTGAACTTCACTGAGCCTGCTACTCCAAGTGTGCAGGATGATTTAGATTGTTTTAGGCGAGTCAAGGCCCTGAAATTACTAAAACAAGAATTTTCCAAAAACAATGTATTTTGGACCTGTGGAGAGAAGCCTCCATAA

Protein sequence

MFKQNQASSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGKLSAQPEVNPKVNVSAMWCGVATPDYPPGFPTVSDKFYVSSGKFSSLNLNDNDSFLTSPVNFTEPATPSVQDDLDCFRRVKALKLLKQEFSKNNVFWTCGEKPP

Homology

[Close]

BLAST of Lcy11g010700 vs. ExPASy TrEMBL
Match: A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 8   SSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGKLSAQ 67
           + +S SG S +E +K L +S+LQFQQETR  +QNLGN+ITQLAT +S++  +S G L +Q
Sbjct: 317 TQASNSGMSLEEIVKNLANSTLQFQQETRVGMQNLGNQITQLATSMSRLEAQSSGXLPSQ 376

Query: 68  PEVNPKVN 76
            EVNPK N
Sbjct: 377 IEVNPKXN 384

[Close]

BLAST of Lcy11g010700 vs. ExPASy TrEMBL
Match: A0A1U7ZAQ0 (uncharacterized protein LOC104588150 OS=Nelumbo nucifera OX=4432 GN=LOC104588150 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 9   SSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGKLSAQP 68
           SSS  G S DE +K+L  ++ QFQQETR  IQNL N+++QLAT +S+M ++  G+L +Q 
Sbjct: 389 SSSNPGMSLDEIVKELATNTQQFQQETRTNIQNLENQVSQLATAMSRMESQVSGRLPSQT 448

Query: 69  EVNPKVNVSAM 80
            VNPK NVSA+
Sbjct: 449 MVNPKQNVSAI 459

[Close]

BLAST of Lcy11g010700 vs. ExPASy TrEMBL
Match: A0A1U7Z9G0 (uncharacterized protein LOC104590680 OS=Nelumbo nucifera OX=4432 GN=LOC104590680 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 8   SSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGKLSAQ 67
           S+S  SG S DE +K L  ++ QFQQETR  I+NL N+++QLAT +S+M ++S G+L +Q
Sbjct: 155 SASPNSGMSLDEIVKALATNTQQFQQETRTSIRNLENQVSQLATAMSQMESQSLGRLPSQ 214

Query: 68  PEVNPKVNVSAM 80
              NPK N SA+
Sbjct: 215 TTTNPKQNASAI 226

[Close]

BLAST of Lcy11g010700 vs. ExPASy TrEMBL
Match: K7PI02 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 2   FKQNQASSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSF 61
           F  NQA+SS  SG S ++ +K L  ++LQFQQ+T   IQNLG ++TQLAT +S++ ++  
Sbjct: 88  FNPNQATSSG-SGMSLEDIVKNLATNTLQFQQKTEASIQNLGAQMTQLATAVSRLESR-- 147

Query: 62  GKLSAQPEVNPKVNVSAM 80
           GKL +Q E  PK+NVS M
Sbjct: 148 GKLPSQTETPPKLNVSMM 162

[Close]

BLAST of Lcy11g010700 vs. ExPASy TrEMBL
Match: A0A1U7ZEK1 (uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 2   FKQNQA------SSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISK 61
           F+Q QA       SSS  G S DE +K L  ++ QFQQETR  IQNL N+++QLAT +S+
Sbjct: 375 FQQYQARQPAPQHSSSKPGMSLDEIVKALATNTQQFQQETRTSIQNLENQVSQLATAVSR 434

Query: 62  MNNKSFGKLSAQPEVNPKVNVSAM 80
           + ++   KL +Q  VNPK N S +
Sbjct: 435 LESQGSRKLPSQTIVNPKQNASTL 458

[Close]

BLAST of Lcy11g010700 vs. NCBI nr
Match: XP_019172756.1 (PREDICTED: uncharacterized protein LOC109168170 [Ipomoea nil])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4   QNQASSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGK 63
           Q   S +S SG S DE +K L +++ QFQQETR  IQ LGN+++QLAT +SK+  ++ GK
Sbjct: 153 QQPQSQASNSGMSLDEIVKALANNTQQFQQETRASIQQLGNQVSQLATSVSKLEAQASGK 212

Query: 64  LSAQPEVNPKVNVSAM 80
           L +Q EVNPK NV+A+
Sbjct: 213 LPSQTEVNPKENVNAI 228

[Close]

BLAST of Lcy11g010700 vs. NCBI nr
Match: XP_019150696.1 (PREDICTED: uncharacterized protein LOC109147552 [Ipomoea nil])

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-09
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 2   FKQNQASSS-----STSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKM 61
           F+Q QA        S SGTS DE +K L +++ QFQ+ETR  IQ LGN+I+QLAT +SK+
Sbjct: 378 FRQFQAPQQSQPQVSNSGTSLDEIVKALANNTQQFQRETRESIQQLGNQISQLATSVSKL 437

Query: 62  NNKSFGKLSAQPEVNPKVNVSAM 80
             ++ GKL +Q EVNPK +V+A+
Sbjct: 438 EAQALGKLPSQTEVNPKESVNAI 460

[Close]

BLAST of Lcy11g010700 vs. NCBI nr
Match: XP_019188859.1 (PREDICTED: uncharacterized protein LOC109183094 [Ipomoea nil])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-09
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4   QNQASSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGK 63
           Q     +S SGTS DE +K L +++ QFQ+ETR  IQ LGN+I+QLAT +SK+  ++ GK
Sbjct: 372 QQSQPQASNSGTSLDEIVKALANNTQQFQRETRASIQQLGNQISQLATSVSKLEAQASGK 431

Query: 64  LSAQPEVNPKVNVSAM 80
           L +Q EVNPK +V+A+
Sbjct: 432 LPSQTEVNPKESVNAI 447

[Close]

BLAST of Lcy11g010700 vs. NCBI nr
Match: XP_031127553.1 (uncharacterized protein LOC116029647 [Ipomoea triloba])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-09
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 11 STSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGKLSAQPEV 70
          S SG S DE +K L +++ QFQQETR  IQ LGN+I+QLAT +SK+  ++  KL +Q EV
Sbjct: 29 SNSGMSLDEIVKGLANNTQQFQQETRAAIQQLGNQISQLATSVSKLEAQASRKLPSQTEV 88

Query: 71 NPKVNVSAM 80
          NPK NVSA+
Sbjct: 89 NPKENVSAI 97

[Close]

BLAST of Lcy11g010700 vs. NCBI nr
Match: XP_019198426.1 (PREDICTED: uncharacterized protein LOC109192308 [Ipomoea nil])

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-09
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 4   QNQASSSSTSGTSFDEALKKLTDSSLQFQQETRNVIQNLGNKITQLATQISKMNNKSFGK 63
           Q     +S SG S DE +K L +++ QFQ+ETR  IQ LGN+I+QLAT +SK+  ++ GK
Sbjct: 349 QQSQPQASNSGMSLDEIVKALANNTQQFQRETRASIQQLGNQISQLATSVSKLEAQASGK 408

Query: 64  LSAQPEVNPKVNVSAM 80
           L +Q EVNPK NV+A+
Sbjct: 409 LPSQTEVNPKENVNAI 424

The following BLAST results are available for this feature:

BLAST of Lcy11g010700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRS5	1.7e-08	55.88	uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1U7ZAQ0	2.2e-08	53.52	uncharacterized protein LOC104588150 OS=Nelumbo nucifera OX=4432 GN=LOC104588150...	[more]
A0A1U7Z9G0	8.4e-08	50.00	uncharacterized protein LOC104590680 OS=Nelumbo nucifera OX=4432 GN=LOC104590680...	[more]
K7PI02	5.4e-07	50.00	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 PE=4 SV=1	[more]
A0A1U7ZEK1	1.6e-06	46.43	uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313...	[more]

BLAST of Lcy11g010700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019172756.1	1.4e-09	52.63	PREDICTED: uncharacterized protein LOC109168170 [Ipomoea nil]	[more]
XP_019150696.1	4.1e-09	50.60	PREDICTED: uncharacterized protein LOC109147552 [Ipomoea nil]	[more]
XP_019188859.1	7.0e-09	51.32	PREDICTED: uncharacterized protein LOC109183094 [Ipomoea nil]	[more]
XP_031127553.1	7.0e-09	56.52	uncharacterized protein LOC116029647 [Ipomoea triloba]	[more]
XP_019198426.1	9.2e-09	51.32	PREDICTED: uncharacterized protein LOC109192308 [Ipomoea nil]	[more]

BLAST of Lcy11g010700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010700.1	Lcy11g010700.1	mRNA