Lcy08g004680 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g004680
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	chromatin remodeling protein EBS-like
Location	Chr08: 6167774 .. 6169379 (+)
RNA-Seq Expression	Lcy08g004680
Synteny	Lcy08g004680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTTCAGTCTTCACCTTCTTCGTCTAGGGTTTCTGGGTGTGGTACTCTTTCAGTCTCAGAGCGTTCTTAATTTCTCGATTTGCGCCCAATAATCGCAATCCATGAGGCCAATCTAATCCATTTTCAACTTGCATTCTCGTTCAGAGTTTGCTTTGCTTTGTCTTCTTTCTCACTCTCGTAGCTTCTTTTTTTTTTTTTTTTTTTTTTGCCTTCTGTAGCGCTATAACTCGAACAGTATCTTAGATTATTGGCGGGATTAATTCATGGCCAAGACTAAACCCGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTCTGGGAACAAAGATTCTTTTTGTTCTTCCTCTTCTTCTTCTTCTTTTGTTTTTGGGTTTACCTCCCCCGCCCAAAAGTCGCCCCCGTTTTTGTTGCTTGTTTGTGTTCAAAGCGACACTTAATTGGTCATTTTCTTCGCAATATGACTTTTGTCATTCAAAGTTTGGTTTGCATTTTCTGTAATTGCTTTTGGTTGCTTCTGGTGGGTGTCATTGATTTTTGGAATTGGGTTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCGGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAAAAAATTGAAGCTGATCATCGGAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCGATTGGAGGACGGAGGCAGTTCCATGGGGCTAAGGAGCTTTTTCTCTCCGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGCAAATGCACGGTGCACTCTTTTAAAAAATTATACCAAACTTGACAATGTTGGAGCAGAGGACTACTTTTGTAGATTCGAGTACAAGGCTGCCACTGGCGGATTCACACCATACCGTGTAGTCATGTGAGTTCTATGGTTTACCTAGTCCCTTTCATGTTTCTACTCAAGCTATCTTAAGTGTCTAATTGTATAAGAAAATTTGTGTTTTATCCTTGTTTGAATTGCAGGTACTGTAAATGTGAGATGCCATACAACCCCGATGACCTTATGGTTCAGTGTATGGGTTGCAAAGATTGGTAAGTTCCTTGTTTTCTTAAACGCCTACTGTAATTGATCAAGTTTAACTAATAGACGCAAAAAGAATAGATAACACTGTTGAAGATTGTGTACCTGGTCTATGTTCCGATCAGATGCAAGCTTAATCATGATTTCTAACTTCTCCATCTTAACATAGATTGGATCATTATACTTACAGAAGAAAACCTACAACATTGGTGATAAATCAAAAAAAGAGAACAAAAGGGAAGTAGTAAGTTTCTAGAAAACAAGCAGTACAAAGTTTCTTGATTATTTACGTTCCTATTTCTTACAAATTACAAGCTACGCTACCATCATATTGGGAAATTTATCACCAACTCACCTTAATTTCATGTGCAAGAATTGTAGGTCGTTTCTGTACTATAAGGTTAATATTTCGCAGTGCAACATATTGTATCTCAGGTTCTGATGAGAGCAAAGTAACAAGAGGAGGAGCCATCTTTTTGCAAAGGTTTCGAACTATA

mRNA sequence

TCTCTCTCTCTTCAGTCTTCACCTTCTTCGTCTAGGGTTTCTGGGTGTGGTACTCTTTCAGTCTCAGAGCGTTCTTAATTTCTCGATTTGCGCCCAATAATCGCAATCCATGAGGCCAATCTAATCCATTTTCAACTTGCATTCTCGTTCAGAGTTTGCTTTGCTTTGTCTTCTTTCTCACTCTCGTAGCTTCTTTTTTTTTTTTTTTTTTTTTTGCCTTCTGTAGCGCTATAACTCGAACAGTATCTTAGATTATTGGCGGGATTAATTCATGGCCAAGACTAAACCCGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTCTGGGAACAAAGATTCTTTTTGTTCTTCCTCTTCTTCTTCTTCTTTTGTTTTTGGGTTTACCTCCCCCGCCCAAAAGTCGCCCCCGTTTTTGTTGCTTGTTTGTGTTCAAAGCGACACTTAATTGGTCATTTTCTTCGCAATATGACTTTTGTCATTCAAAGTTTGGTTTGCATTTTCTGTAATTGCTTTTGGTTGCTTCTGGTGGGTGTCATTGATTTTTGGAATTGGGTTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCGGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAAAAAATTGAAGCTGATCATCGGAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCGATTGGAGGACGGAGGCAGTTCCATGGGGCTAAGGAGCTTTTTCTCTCCGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGCAAATGCACGGTGCACTCTTTTAAAAAATTATACCAAACTTGACAATGTTGGAGCAGAGGACTACTTTTGTAGATTCGAGTACAAGGCTGCCACTGGCGGATTCACACCATACCGTGTAGTCATGTACTGTAAATGTGAGATGCCATACAACCCCGATGACCTTATGGTTCAGTGTATGGGTTGCAAAGATTGGTTCTGATGAGAGCAAAGTAACAAGAGGAGGAGCCATCTTTTTGCAAAGGTTTCGAACTATA

Coding sequence (CDS)

ATGACTTTTGTCATTCAAAGTTTGGTTTGCATTTTCTGTAATTGCTTTTGGTTGCTTCTGGTGGGTGTCATTGATTTTTGGAATTGGGTTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCGGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAAAAAATTGAAGCTGATCATCGGAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCGATTGGAGGACGGAGGCAGTTCCATGGGGCTAAGGAGCTTTTTCTCTCCGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGCAAATGCACGGTGCACTCTTTTAAAAAATTATACCAAACTTGA

Protein sequence

MTFVIQSLVCIFCNCFWLLLVGVIDFWNWVSVVVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKKLYQT

Homology

[Close]

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot
Match: F4JL28 (Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-39
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           VV AGDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKE
Sbjct: 30  VVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKE 89

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKC VH+FK
Sbjct: 90  LFLSDHFDVQSAHTIEGKCIVHTFK 114

[Close]

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot
Match: F4JGB7 (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04260 PE=3 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-35
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 37  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 96
           GDCVLMRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLS
Sbjct: 43  GDCVLMRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLS 102

Query: 97  DHFDVQSAHTIEGKCTVHSFK 118
           DHFDVQSAHTIEGKC VH+FK
Sbjct: 103 DHFDVQSAHTIEGKCIVHTFK 123

[Close]

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot
Match: Q9FEN9 (Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-30
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 34  VAAGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKE 93
           +  GD VLMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 23  IQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKE 82

Query: 94  LFLSDHFDVQSAHTIEGKCTVHSF 117
           +FLSDHFD QSA TIEGKC VHSF
Sbjct: 83  VFLSDHFDFQSADTIEGKCKVHSF 106

[Close]

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot
Match: Q3UHR0 (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahcc1 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-09
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 37   GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 96
            GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L+ S
Sbjct: 2522 GDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQS 2581

Query: 97   DHFDVQSAHTIEGKCTV 114
             H D     TI  KC V
Sbjct: 2582 CHEDENDVQTISHKCQV 2598

[Close]

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot
Match: Q9P281 (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC1 PE=1 SV=4)

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-09
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 37   GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 96
            GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L+ S
Sbjct: 2518 GDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKNALYQS 2577

Query: 97   DHFDVQSAHTIEGKCTV 114
             H D     TI  KC V
Sbjct: 2578 CHEDENDVQTISHKCQV 2594

[Close]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL
Match: A0A2H5QH88 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_230130 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 30  VSVVVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG 89
           V + VAAGDCVLMRP+DSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG
Sbjct: 27  VLLCVAAGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG 86

Query: 90  AKELFLSDHFDVQSAHTIEGKCTVHSFK 118
           AKELFLSDH+DVQSAHTIEGKCTVHSFK
Sbjct: 87  AKELFLSDHYDVQSAHTIEGKCTVHSFK 114

[Close]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL
Match: A0A6J1JN00 (chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC111486148 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.5e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL
Match: A0A6J1ESB9 (chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437125 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.5e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL
Match: A0A5D3C9X7 (Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004500 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.5e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL
Match: A0A1S3C280 (chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495624 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.5e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. NCBI nr
Match: GAY64000.1 (hypothetical protein CUMW_230130 [Citrus unshiu])

HSP 1 Score: 177.9 bits (450), Expect = 5.1e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 30  VSVVVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG 89
           V + VAAGDCVLMRP+DSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG
Sbjct: 27  VLLCVAAGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHG 86

Query: 90  AKELFLSDHFDVQSAHTIEGKCTVHSFK 118
           AKELFLSDH+DVQSAHTIEGKCTVHSFK
Sbjct: 87  AKELFLSDHYDVQSAHTIEGKCTVHSFK 114

[Close]

BLAST of Lcy08g004680 vs. NCBI nr
Match: KAF8410772.1 (hypothetical protein HHK36_003309 [Tetracentron sinense])

HSP 1 Score: 177.2 bits (448), Expect = 8.8e-41
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V AGDCVLMRPSDSDKPPYVAR+EKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRAGDCVLMRPSDSDKPPYVARIEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDH+DVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHYDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. NCBI nr
Match: XP_022930734.1 (chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022930735.1 chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022988944.1 chromatin remodeling protein EBS-like [Cucurbita maxima] >XP_022988945.1 chromatin remodeling protein EBS-like [Cucurbita maxima] >XP_023530935.1 chromatin remodeling protein EBS-like [Cucurbita pepo subsp. pepo] >KAG6589146.1 Chromatin remodeling protein EBS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. NCBI nr
Match: XP_038888815.1 (chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida] >XP_038888816.1 chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. NCBI nr
Match: XP_008455467.1 (PREDICTED: chromatin remodeling protein EBS-like isoform X1 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           +V  GDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 22  IVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKCTVHSFK
Sbjct: 82  LFLSDHFDVQSAHTIEGKCTVHSFK 106

[Close]

BLAST of Lcy08g004680 vs. TAIR 10
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           VV AGDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKE
Sbjct: 30  VVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKE 89

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKC VH+FK
Sbjct: 90  LFLSDHFDVQSAHTIEGKCIVHTFK 114

[Close]

BLAST of Lcy08g004680 vs. TAIR 10
Match: AT4G22140.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 33  VVAAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 92
           VV AGDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKE
Sbjct: 30  VVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKE 89

Query: 93  LFLSDHFDVQSAHTIEGKCTVHSFK 118
           LFLSDHFDVQSAHTIEGKC VH+FK
Sbjct: 90  LFLSDHFDVQSAHTIEGKCIVHTFK 114

[Close]

BLAST of Lcy08g004680 vs. TAIR 10
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 137.5 bits (345), Expect = 7.2e-33
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 42  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 101
           MRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLSDHFDV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 102 QSAHTIEGKCTVHSFK 118
           QSAHTIEGKC VH+FK
Sbjct: 61  QSAHTIEGKCIVHTFK 76

[Close]

BLAST of Lcy08g004680 vs. TAIR 10
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 131.3 bits (329), Expect = 5.1e-31
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 34  VAAGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKE 93
           +  GD VLMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 23  IQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKE 82

Query: 94  LFLSDHFDVQSAHTIEGKCTVHSF 117
           +FLSDHFD QSA TIEGKC VHSF
Sbjct: 83  VFLSDHFDFQSADTIEGKCKVHSF 106

[Close]

BLAST of Lcy08g004680 vs. TAIR 10
Match: AT4G39100.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 131.3 bits (329), Expect = 5.1e-31
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 34  VAAGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKE 93
           +  GD VLMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE
Sbjct: 23  IQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKE 82

Query: 94  LFLSDHFDVQSAHTIEGKCTVHSF 117
           +FLSDHFD QSA TIEGKC VHSF
Sbjct: 83  VFLSDHFDFQSADTIEGKCKVHSF 106

The following BLAST results are available for this feature:

BLAST of Lcy08g004680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JL28	1.7e-39	89.41	Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=...	[more]
F4JGB7	3.3e-35	86.42	Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04...	[more]
Q9FEN9	7.2e-30	76.19	Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=...	[more]
Q3UHR0	7.0e-09	36.36	BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahc...	[more]
Q9P281	9.2e-09	36.36	BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC...	[more]

BLAST of Lcy08g004680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5QH88	2.5e-41	94.32	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_230130 PE=4 SV=1	[more]
A0A6J1JN00	5.5e-41	96.47	chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC11148614...	[more]
A0A6J1ESB9	5.5e-41	96.47	chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437...	[more]
A0A5D3C9X7	5.5e-41	96.47	Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3C280	5.5e-41	96.47	chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lcy08g004680 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY64000.1	5.1e-41	94.32	hypothetical protein CUMW_230130 [Citrus unshiu]	[more]
KAF8410772.1	8.8e-41	95.29	hypothetical protein HHK36_003309 [Tetracentron sinense]	[more]
XP_022930734.1	1.1e-40	96.47	chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022930735.1 chrom...	[more]
XP_038888815.1	1.1e-40	96.47	chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida] >XP_0388888...	[more]
XP_008455467.1	1.1e-40	96.47	PREDICTED: chromatin remodeling protein EBS-like isoform X1 [Cucumis melo]	[more]

BLAST of Lcy08g004680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22140.1	1.2e-40	89.41	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G22140.2	1.2e-40	89.41	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G04260.1	7.2e-33	85.53	Bromo-adjacent homology (BAH) domain-containing protein	[more]
AT4G39100.1	5.1e-31	76.19	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G39100.2	5.1e-31	76.19	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001025	Bromo adjacent homology (BAH) domain	SMART	SM00439	BAH_4	coord: 32..120 e-value: 2.2E-17 score: 73.8
IPR001025	Bromo adjacent homology (BAH) domain	PFAM	PF01426	BAH	coord: 33..118 e-value: 1.9E-19 score: 69.7
IPR001025	Bromo adjacent homology (BAH) domain	PROSITE	PS51038	BAH	coord: 32..122 score: 20.048502
IPR043151	Bromo adjacent homology (BAH) domain superfamily	GENE3D	2.30.30.490		coord: 28..121 e-value: 2.8E-30 score: 107.7
None	No IPR available	PANTHER	PTHR46364	OS08G0421900 PROTEIN	coord: 32..118
None	No IPR available	PANTHER	PTHR46364:SF11	CHROMATIN REMODELING PROTEIN EBS	coord: 32..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g004680.1	Lcy08g004680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding