Lcy08g003000 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g003000
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Calcium-binding EF-hand family protein
Location	Chr08: 4308044 .. 4308870 (-)
RNA-Seq Expression	Lcy08g003000
Synteny	Lcy08g003000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTGCCAAACCGAACCGGTCCGGTTCGGTTCGGTTTCCAAGTTTAATTTTGACCTAACCGAACCGAACCGAAGCGGTTCGGTTCGCTGTTTTGCCCCACATATAAGATACGCGTTAGATCGTGGTCTTCGTCTTCGCCGCCTAGGGTTTTTCGTCTTCGTTTTCTTTGCCCGAACAGCTCGTGGTCTTCGTCTTCGCCTCCCAACCTCGTCTTCGTCTTCGCCGCCTCAACCTCGTCTTCGTCTTCGTCGCCTCTCGTGCTTGTGGTCTTCATCTTCGCCGCTCATCCGCGACTTCGTCTCGAACGGTAATGGCTCCGTAGAGTTTGACGAATTGGTGACCGCGATTATGCCAGATTTCAACGAGGAGGTAATGGTAAATCAGACGCATCTTCTGGAGGTTTTCCGTTCGTTCGATCGAGACGACAATGGATACATTACCGCGGCGGAGCTGGCTGGATCGATGGCGAAAATGGGACAGCCATTGACGTACAGAGAGCTAACGGAGATGATGAAGGAAGCCGACATGGATGGCGATGGCGTAATTAGCTTCAATGAATTTGCATCTGTAATGGCTAAATCGGCCGCTGAATTTTAGGGCTTGCAATCTCTTGACTAGGTCAGAATCGTTTCTTAATCTTAAATGCCTTCCATGTTTGAAACTGTAATATAATTGTCAAAACTGTAATAAAATTATGAAATAAACTTTGTCCTTCTTCGTGTAATCCTTGTTTTCAATTTTTTGTCAAGATTATATTATTTTGGTTTTGTGTTTAACAGGTACTTTGTTGTTGTTTGATTTTGATTTACTTTGTTTTTGTGTTT

mRNA sequence

ATGCTCTGCCAAACCGAACCGGTCCGGTTCGGTTCGGTTTCCAAGTTTAATTTTGACCTAACCGAACCGAACCGAAGCGGTTCGGTTCGCTGTTTTGCCCCACATATAAGATACGCGTTAGATCGTGGTCTTCGTCTTCGCCGCCTAGGGTTTTTCGTCTTCGTTTTCTTTGCCCGAACAGCTCGTGGTCTTCGTCTTCGCCTCCCAACCTCGTCTTCGTCTTCGCCGCCTCAACCTCGTCTTCGTCTTCGTCGCCTCTCGTGCTTGTGGTCTTCATCTTCGCCGCTCATCCGCGACTTCGTCTCGAACGGTAATGGCTCCGTAGAGTTTGACGAATTGGTGACCGCGATTATGCCAGATTTCAACGAGGAGGTAATGGTAAATCAGACGCATCTTCTGGAGGTTTTCCGTTCGTTCGATCGAGACGACAATGGATACATTACCGCGGCGGAGCTGGCTGGATCGATGGCGAAAATGGGACAGCCATTGACGTACAGAGAGCTAACGGAGATGATGAAGGAAGCCGACATGGATGGCGATGGCGTAATTAGCTTCAATGAATTTGCATCTGTAATGGCTAAATCGGCCGCTGAATTTTAGGGCTTGCAATCTCTTGACTAGGTCAGAATCGTTTCTTAATCTTAAATGCCTTCCATGTTTGAAACTGTAATATAATTGTCAAAACTGTAATAAAATTATGAAATAAACTTTGTCCTTCTTCGTGTAATCCTTGTTTTCAATTTTTTGTCAAGATTATATTATTTTGGTTTTGTGTTTAACAGGTACTTTGTTGTTGTTTGATTTTGATTTACTTTGTTTTTGTGTTT

Coding sequence (CDS)

ATGCTCTGCCAAACCGAACCGGTCCGGTTCGGTTCGGTTTCCAAGTTTAATTTTGACCTAACCGAACCGAACCGAAGCGGTTCGGTTCGCTGTTTTGCCCCACATATAAGATACGCGTTAGATCGTGGTCTTCGTCTTCGCCGCCTAGGGTTTTTCGTCTTCGTTTTCTTTGCCCGAACAGCTCGTGGTCTTCGTCTTCGCCTCCCAACCTCGTCTTCGTCTTCGCCGCCTCAACCTCGTCTTCGTCTTCGTCGCCTCTCGTGCTTGTGGTCTTCATCTTCGCCGCTCATCCGCGACTTCGTCTCGAACGGTAATGGCTCCGTAGAGTTTGACGAATTGGTGACCGCGATTATGCCAGATTTCAACGAGGAGGTAATGGTAAATCAGACGCATCTTCTGGAGGTTTTCCGTTCGTTCGATCGAGACGACAATGGATACATTACCGCGGCGGAGCTGGCTGGATCGATGGCGAAAATGGGACAGCCATTGACGTACAGAGAGCTAACGGAGATGATGAAGGAAGCCGACATGGATGGCGATGGCGTAATTAGCTTCAATGAATTTGCATCTGTAATGGCTAAATCGGCCGCTGAATTTTAG

Protein sequence

MLCQTEPVRFGSVSKFNFDLTEPNRSGSVRCFAPHIRYALDRGLRLRRLGFFVFVFFARTARGLRLRLPTSSSSSPPQPRLRLRRLSCLWSSSSPLIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGSMAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF

Homology

[Close]

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot
Match: Q9LI84 (Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 4.8e-39
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 94  SPLIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELA 153
           S L+     NGNGSVEFDELV AI+PD NEEV++NQ  L+EVFRSFDRD NG ITAAELA
Sbjct: 50  SLLLNQIDRNGNGSVEFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELA 109

Query: 154 GSMAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           GSMAKMG PLTYRELTEMM EAD +GDGVISFNEF+ +MAKSAA+F
Sbjct: 110 GSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIMAKSAADF 155

[Close]

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot
Match: Q9FZ75 (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-37
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+    SNGNG VEFDELV  I+PD NEEV++N   LLE+F+SFDRD NG+I+AAELAG+
Sbjct: 47  LLASMDSNGNGFVEFDELVGTILPDLNEEVLINSEQLLEIFKSFDRDGNGFISAAELAGA 106

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTY+ELTEM+KEAD +GDGVISF EFAS+MAKSA ++
Sbjct: 107 MAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIMAKSAVDY 150

[Close]

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot
Match: Q6L5F4 (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEV-MVNQTHLLEVFRSFDRDDNGYITAAELAG 155
           L+    +NGNGSVEFDEL  AI P    +  +V+Q  LLEVFR+FDRD NG+I+AAELA 
Sbjct: 65  LLAGMDANGNGSVEFDELAAAIAPVLTTQTHLVDQAQLLEVFRAFDRDGNGFISAAELAR 124

Query: 156 SMAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           SMA++GQPLT+ ELT MM++AD DGDGVISF EFA+VMAKSA +F
Sbjct: 125 SMARLGQPLTFEELTRMMRDADTDGDGVISFKEFAAVMAKSALDF 169

[Close]

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot
Match: Q5ZD81 (Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-26
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTA----IMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAE 155
           LI    ++GNG+VEFDEL ++    I+      V V+Q  L E FR+FDRD NG+I+AAE
Sbjct: 136 LIAAIDADGNGTVEFDELASSLADLILGPCRPSVAVDQAELAEAFRAFDRDGNGFISAAE 195

Query: 156 LAGSMAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           LA SMA+MG P+ Y ELT+MM+EAD DGDG+ISF EF ++MAKSA +F
Sbjct: 196 LARSMARMGHPICYAELTDMMREADTDGDGLISFEEFTAIMAKSALDF 243

[Close]

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot
Match: Q9M8U1 (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-19
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           LI+    N NG VEF E V  + PD   +       L  +FR FDRD NGYITAAELA S
Sbjct: 60  LIQKADRNNNGLVEFSEFVALVEPDL-VKCPYTDDQLKAIFRMFDRDGNGYITAAELAHS 119

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSA 197
           MAK+G  LT  ELT M+KEAD DGDG I F EF   +  +A
Sbjct: 120 MAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAITSAA 159

[Close]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL
Match: A0A5D3DXV7 (Putative calcium-binding protein CML15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00110 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTRLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL
Match: A0A0A0LUS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015780 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL
Match: A0A1S3BX63 (probable calcium-binding protein CML15 OS=Cucumis melo OX=3656 GN=LOC103494094 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTRLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL
Match: A0A6J1C0M6 (probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC111007259 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 8.7e-44
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  +NGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LVANMDANGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSA+EF
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSASEF 154

[Close]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL
Match: A0A6J1L5D2 (probable calcium-binding protein CML15 OS=Cucurbita maxima OX=3661 GN=LOC111499274 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  +NGNGSVEFDELVTAI PDFNEE+MVNQTHLLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LVANMDANGNGSVEFDELVTAIRPDFNEEIMVNQTHLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFAS+MAKSA++F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASIMAKSASDF 154

[Close]

BLAST of Lcy08g003000 vs. NCBI nr
Match: XP_004138337.2 (probable calcium-binding protein CML15 [Cucumis sativus] >XP_031741380.1 probable calcium-binding protein CML15 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. NCBI nr
Match: XP_008453344.1 (PREDICTED: probable calcium-binding protein CML15 [Cucumis melo] >KAA0058039.1 putative calcium-binding protein CML15 [Cucumis melo var. makuwa] >TYK28384.1 putative calcium-binding protein CML15 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTRLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. NCBI nr
Match: XP_038880166.1 (probable calcium-binding protein CML15 [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 154

[Close]

BLAST of Lcy08g003000 vs. NCBI nr
Match: KAE8652452.1 (hypothetical protein Csa_013816 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  SNGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 147 LLANMDSNGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 206

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSAA+F
Sbjct: 207 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSAADF 250

[Close]

BLAST of Lcy08g003000 vs. NCBI nr
Match: XP_022135250.1 (probable calcium-binding protein CML15 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-43
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+ +  +NGNGSVEFDELVTAIMPDFNEEVMVNQT LLEVFRSFDRD NGYITAAELAGS
Sbjct: 51  LVANMDANGNGSVEFDELVTAIMPDFNEEVMVNQTQLLEVFRSFDRDGNGYITAAELAGS 110

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTYRELTEMMKEAD DGDGVISFNEFASVMAKSA+EF
Sbjct: 111 MAKMGQPLTYRELTEMMKEADTDGDGVISFNEFASVMAKSASEF 154

[Close]

BLAST of Lcy08g003000 vs. TAIR 10
Match: AT3G25600.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-40
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 94  SPLIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELA 153
           S L+     NGNGSVEFDELV AI+PD NEEV++NQ  L+EVFRSFDRD NG ITAAELA
Sbjct: 50  SLLLNQIDRNGNGSVEFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELA 109

Query: 154 GSMAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           GSMAKMG PLTYRELTEMM EAD +GDGVISFNEF+ +MAKSAA+F
Sbjct: 110 GSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIMAKSAADF 155

[Close]

BLAST of Lcy08g003000 vs. TAIR 10
Match: AT1G18530.1 (EF hand calcium-binding protein family )

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-38
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           L+    SNGNG VEFDELV  I+PD NEEV++N   LLE+F+SFDRD NG+I+AAELAG+
Sbjct: 47  LLASMDSNGNGFVEFDELVGTILPDLNEEVLINSEQLLEIFKSFDRDGNGFISAAELAGA 106

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSAAEF 200
           MAKMGQPLTY+ELTEM+KEAD +GDGVISF EFAS+MAKSA ++
Sbjct: 107 MAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIMAKSAVDY 150

[Close]

BLAST of Lcy08g003000 vs. TAIR 10
Match: AT3G03000.1 (EF hand calcium-binding protein family )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           LI+    N NG VEF E V  + PD   +       L  +FR FDRD NGYITAAELA S
Sbjct: 60  LIQKADRNNNGLVEFSEFVALVEPDL-VKCPYTDDQLKAIFRMFDRDGNGYITAAELAHS 119

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSA 197
           MAK+G  LT  ELT M+KEAD DGDG I F EF   +  +A
Sbjct: 120 MAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAITSAA 159

[Close]

BLAST of Lcy08g003000 vs. TAIR 10
Match: AT1G32250.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-18
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 102 SNGNGSVEFDELVTAIMPDF----NEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGSMA 161
           +  NG VEF E V  + P+            +  LL +FR FD D NG+ITAAELA SMA
Sbjct: 62  TKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDGNGFITAAELAHSMA 121

Query: 162 KMGQPLTYRELTEMMKEADMDGDGVISFNEFASVMAKSA 197
           K+G  LT  ELT M+KEAD DGDG I+F EFA  +  +A
Sbjct: 122 KLGHALTVAELTGMIKEADSDGDGRINFQEFAKAINSAA 160

[Close]

BLAST of Lcy08g003000 vs. TAIR 10
Match: AT2G41110.1 (calmodulin 2 )

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-16
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 96  LIRDFVSNGNGSVEFDELVTAIMPDFNEEVMVNQTHLLEVFRSFDRDDNGYITAAELAGS 155
           +I +  ++GNG+++F E +  +     +    ++  L E FR FD+D NG+I+AAEL   
Sbjct: 52  MINEVDADGNGTIDFPEFLNLMARKMKD--TDSEEELKEAFRVFDKDQNGFISAAELRHV 111

Query: 156 MAKMGQPLTYRELTEMMKEADMDGDGVISFNEFASVM 193
           M  +G+ LT  E+ EM+KEAD+DGDG I++ EF  VM
Sbjct: 112 MTNLGEKLTDEEVDEMIKEADVDGDGQINYEEFVKVM 146

The following BLAST results are available for this feature:

BLAST of Lcy08g003000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LI84	4.8e-39	76.42	Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 ...	[more]
Q9FZ75	5.8e-37	71.15	Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 ...	[more]
Q6L5F4	1.4e-30	64.76	Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5ZD81	3.5e-26	56.48	Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9M8U1	3.2e-19	52.48	Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 ...	[more]

BLAST of Lcy08g003000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXV7	5.1e-44	91.35	Putative calcium-binding protein CML15 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LUS7	5.1e-44	91.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015780 PE=4 SV=1	[more]
A0A1S3BX63	5.1e-44	91.35	probable calcium-binding protein CML15 OS=Cucumis melo OX=3656 GN=LOC103494094 P...	[more]
A0A6J1C0M6	8.7e-44	90.38	probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1L5D2	1.9e-43	87.50	probable calcium-binding protein CML15 OS=Cucurbita maxima OX=3661 GN=LOC1114992...	[more]

BLAST of Lcy08g003000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138337.2	1.1e-43	91.35	probable calcium-binding protein CML15 [Cucumis sativus] >XP_031741380.1 probabl...	[more]
XP_008453344.1	1.1e-43	91.35	PREDICTED: probable calcium-binding protein CML15 [Cucumis melo] >KAA0058039.1 p...	[more]
XP_038880166.1	1.1e-43	91.35	probable calcium-binding protein CML15 [Benincasa hispida]	[more]
KAE8652452.1	1.1e-43	91.35	hypothetical protein Csa_013816 [Cucumis sativus]	[more]
XP_022135250.1	1.8e-43	90.38	probable calcium-binding protein CML15 [Momordica charantia]	[more]

BLAST of Lcy08g003000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25600.1	3.4e-40	76.42	Calcium-binding EF-hand family protein	[more]
AT1G18530.1	4.1e-38	71.15	EF hand calcium-binding protein family	[more]
AT3G03000.1	2.3e-20	52.48	EF hand calcium-binding protein family	[more]
AT1G32250.1	2.1e-18	49.49	Calcium-binding EF-hand family protein	[more]
AT2G41110.1	9.9e-16	41.24	calmodulin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 131..159 e-value: 0.027 score: 23.6 coord: 167..195 e-value: 7.4E-7 score: 38.8 coord: 92..120 e-value: 110.0 score: 1.2
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 131..192 e-value: 4.9E-13 score: 49.3
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 163..198 score: 13.537066
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 127..162 score: 13.202322
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 131..193 e-value: 5.52206E-18 score: 72.5805
None	No IPR available	GENE3D	1.10.238.10		coord: 80..198 e-value: 5.3E-25 score: 89.9
None	No IPR available	PANTHER	PTHR23050	CALCIUM BINDING PROTEIN	coord: 96..199
None	No IPR available	PANTHER	PTHR23050:SF351	CALCIUM-BINDING PROTEIN CML15-RELATED	coord: 96..199
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 176..188
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 140..152
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 96..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g003000.1	Lcy08g003000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030234	enzyme regulator activity