Lcy07g011810 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011810
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	high mobility group B protein 3-like
Location	Chr07: 40946104 .. 40948323 (+)
RNA-Seq Expression	Lcy07g011810
Synteny	Lcy07g011810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGTTCTCTCCTTCGTCTCTGTTCCTTTGATCACTCTCAATTTCTTTCTCTGCACGTCTCGCCTAATTCTGGAAAACCACCATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGTAATCTTCATTCTTCACACTGATTTTGATTTTCTTGTTTCCATTTTTCTCTTGAATTAGTTTTGATAACATTCTTTGTTTCGATCTTCGATAAAAGTTCCTAATCTTCTCCTGTACGCTTCGTTTCTTTGCTTCTGTAATTTCTCTTCAATTGCCTATGCTATACTCTTTCTCTCTGTACATTTGTGTTCTTATGCTTTCTAGGTAATGTATGTCCATTTTTCTTTCTACTTCGTTTTGTAGTATTTCGCCTCTTTGTTCATTTATAGTTGAGTTGAATTTCACAGTATGCTTTGTCTGCTTTAGATTTATTAGTTTTATGTTTTCCTACACAAGGTTTCTTTCTTCACTTTTTTGAACCTCAACTATTCAACTGATATTATTTCTTTATTCTGCTCGCAATCGTTGTTTCCGAATTAAATCAAGTAACTATTTCTCTTCTGTTTTGCCTACGTTTTGGCTGTGCCGCTCATTTGACTCTGCTCAAGTTTTTATCCAATTTGCACATCCTGATATGTGATTTTGTCATTGATCCGCTTTTCGAAGGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGTGAGTATAATCTAACTCTATTGCTCTGTCAAGTCTGCTTCATTTTGAATCCTTCCTTTACACTCTAGCTTGCATTATATTATTCGTTCTGATCTCGATTTCTTGTTTTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTGAGATTTAGTACTCTTGCTTTAATCAGTATTCCTTTCTTTTTATTCCTCCACTTCTATTTAAGTTCGACCAAGTGGAGGCTCAGAAGACTTCTCGAGTTAGCTATATTTGTCATTTGTGGTTCCCTGTGTTTTGTTATTTTGCAGGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGTAAGATTATGATATCTTATTTTCATACTATTTCAATAGAAAACCAGTTCGAGAGTAAACAATTATTAGTGAATAATCCTAGGAATAAATGATTAAGCAATAGGATTGGAGGTTAATTGTTCTACATTATCTGAAGATCGTTCATGTTTTGCACTCTGTATTCACTTCGCTACTTGATCAGAAATATTGACGATACAAATCTGTGGTACTTGTTTTTCTTCCTCAGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCGTAACTCTTTTCTATTCTCCTCTCCTTTCATTCCTTCGGCTTCACCTTGTCTGAACATCACCACGCTTCCATATATCATCTATTGTCCCTCTCTCTCTTTTCTCTAAGATCTCCTGGTTTTCAGAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAGGTATATTCTTTTCCTATCTAAAGATGCCATATACCAAATCATGCATTCTATAGCACAACTGTGTGCCATATCATCTTCTATCGGTTCTTATAGATGTTGATTTTATCTTATCGCGAATGCCAGCTGATACTGGGTTTCCTATATCATCTGCCAAGATTTGCAGGAGTTCGGTGTCCCTTTGAGGTGACAGTATTTCATATTTTTTTAAATAAAAGTTGCATGGTTATGGACGTGAGCTAGCAAGCAAAGTGCAGGGAGTCGAGATGAAGCTAGAACTTGCACAACTGATCTTAACAATTTTAGGACAAAGTTAGTAATTTCTTTCGAAACATATGTATATTCTACGTACTTCTGCTCTGGTAGTGAACTGAATGTCTCATTTCTCTTGAGATTATTATCTGGTTAACAGGGGTTTGTGTTGATTTCCGATTAAAATTTCGTATGGACATTCCGGAAGATTGACGTAAATTGAGTTTGAAAAAGAATTTAGAAAATACTGGGATTTGAAACTTGATAAAAAGAAA

mRNA sequence

GCCGTTCTCTCCTTCGTCTCTGTTCCTTTGATCACTCTCAATTTCTTTCTCTGCACGTCTCGCCTAATTCTGGAAAACCACCATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAGCTGATACTGGGTTTCCTATATCATCTGCCAAGATTTGCAGGAGTTCGGTGTCCCTTTGAGGTGACAGTATTTCATATTTTTTTAAATAAAAGTTGCATGGTTATGGACGTGAGCTAGCAAGCAAAGTGCAGGGAGTCGAGATGAAGCTAGAACTTGCACAACTGATCTTAACAATTTTAGGACAAAGTTAGTAATTTCTTTCGAAACATATGTATATTCTACGTACTTCTGCTCTGGTAGTGAACTGAATGTCTCATTTCTCTTGAGATTATTATCTGGTTAACAGGGGTTTGTGTTGATTTCCGATTAAAATTTCGTATGGACATTCCGGAAGATTGACGTAAATTGAGTTTGAAAAAGAATTTAGAAAATACTGGGATTTGAAACTTGATAAAAAGAAA

Coding sequence (CDS)

ATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDEAGQEASSSS

Homology

[Close]

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWK 82
           K   + T+  +  KKD N PKR  + FF+F+E+FR TFK++ P+VKA  AVGKAGG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 83  SLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDE 141
           S+S AEKAPY EKA KRKAEYE  ++AY KNL          E   ES+KS SE++DE
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRSEINDE 142

[Close]

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-22
Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMK---------KDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAV 82
           KAE +STK +   K         KD N PKRP++ FF+FME+FR T+KE+ P  K+  AV
Sbjct: 7   KAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66

Query: 83  GKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKS 142
           GKAGGEKWKSLSD+EKAPY  KA KRK EYE  ++AY K L      E   +   ES KS
Sbjct: 67  GKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKS 126

Query: 143 SSEVHDEAGQEASS 148
            SEV+DE   E  S
Sbjct: 127 VSEVNDEDDAEDGS 134

[Close]

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 12  KKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGP 71
           K  N   +K++ A+ K TK      KD N PKRP + FF+FME+FRKT+KEK P+ K+  
Sbjct: 9   KSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVA 68

Query: 72  AVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQ 131
            VGKAGG+KWK L+ AEKAP+  KA KRK EYE  L+AY K     AGA  E     ES 
Sbjct: 69  VVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ--AAGAAEE----EESD 128

Query: 132 KSSSEVHDE 141
           KS SEV+D+
Sbjct: 129 KSRSEVNDD 128

[Close]

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-21
Identity = 65/129 (50.39%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 19  LKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGG 78
           L   K   K     +A  KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 79  EKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVH 138
           +KWKSLSD+EKAPY  KA KRK EYE  ++AY K L      E   +   ES KS SEV+
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVN 134

Query: 139 DEAGQEASS 148
           DE   E  S
Sbjct: 135 DEDDAEDGS 137

[Close]

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 66/139 (47.48%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 13  KPNAEMLKQRKAEMKSTKSNRAMK-KDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGP 72
           K +A++  + K   K  K  +    KD N PKR  + FF+FMEEFRK FKEK P  K+  
Sbjct: 11  KADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVA 70

Query: 73  AVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCA----GAEAEIEMP 132
           AVGKA G++WKSLS+++KAPY  KA K K EY  A+ AY K  +  A      E E E  
Sbjct: 71  AVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDE 130

Query: 133 TESQKSSSEVHDEAGQEAS 147
            ES KS SEV+DE  +E S
Sbjct: 131 EESDKSKSEVNDEDDEEGS 149

[Close]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59
Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N V+ HKKPNAEMLK+RKAEMKSTKSN+AMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKK LNC A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAE+EM TESQKS+S+V D+  QEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.4e-59
Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRA RN VIA KKPNAEMLKQRKAEMKSTKSN++MKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKSLSDAEKAPYAEKAL RK EY IALEAYKK LNCCA A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EA   MPTESQKS+SEVHD+  QEASSSS
Sbjct: 121 EA--AMPTESQKSTSEVHDDVDQEASSSS 147

[Close]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 125/149 (83.89%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N V+ HKKPNAEMLK+RKAEMKSTKSN+AMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKK LNC   A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAE+E+ TESQKS+S+V D+A QEASSSS
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 120/149 (80.54%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALRN V+ HKKPNA+ LKQRKAEMKSTKS    KKDQNAPKRPAT FF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KE+FPD KAGP VGKAGGEKWKS+SDAEKAPYAEKALKRKAEYEIALEAYK N NC   A
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           E E+EMPTESQKS+SEV+D+  QEASSSS
Sbjct: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 120/157 (76.43%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALRN V+ HKKPNA+ LKQRKAEMKSTKS    KKDQNAPKRPAT FF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDA--------EKAPYAEKALKRKAEYEIALEAYKK 120
           KE+FPD KAGP VGKAGGEKWKS+SDA        EKAPYAEKALKRKAEYEIALEAYK 
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKN 120

Query: 121 NLNCCAGAEAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           N NC   AE E+EMPTESQKS+SEV+D+  QEASSSS
Sbjct: 121 NFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59
Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALR+ V++ KK NA+MLKQRK EMKSTKS +A KKDQNAPKRPAT FF+FMEEFRKTF
Sbjct: 1   MRALRSAVVSRKKLNAQMLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KE+FPD KAGP VGKAGGEKWKS+SD EKAPYAEKAL+RKAEYEIALEAYKKNLNCCA A
Sbjct: 61  KEEFPDAKAGPVVGKAGGEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAEIEMPTESQKS+SEVHD+A QEASSSS
Sbjct: 121 EAEIEMPTESQKSTSEVHDDAEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N V+ HKKPNAEMLK+RKAEMKSTKSN+AMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKK LNC A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAE+EM TESQKS+S+V D+  QEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N V+ HKKPN EMLK+RKAEMKSTKSN+AMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNVEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKK LNC A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAE+EM TESQKS+S+V D+A QEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022140698.1 (high mobility group B protein 3-like [Momordica charantia])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRA RN VIA KKPNAEMLKQRKAEMKSTKSN++MKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKSLSDAEKAPYAEKAL RK EY IALEAYKK LNCCA A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EA   MPTESQKS+SEVHD+  QEASSSS
Sbjct: 121 EA--AMPTESQKSTSEVHDDVDQEASSSS 147

[Close]

BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 125/149 (83.89%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N V+ HKKPNAEMLK+RKAEMKSTKSN+AMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGA 120
           KEKFPD KAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKK LNC   A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAEIEMPTESQKSSSEVHDEAGQEASSSS 150
           EAE+E+ TESQKS+S+V D+A QEASSSS
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWK 82
           K   + T+  +  KKD N PKR  + FF+F+E+FR TFK++ P+VKA  AVGKAGG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 83  SLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDE 141
           S+S AEKAPY EKA KRKAEYE  ++AY KNL          E   ES+KS SE++DE
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRSEINDE 142

[Close]

BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWK 82
           K   + T+  +  KKD N PKR  + FF+F+E+FR TFK++ P+VKA  AVGKAGG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 83  SLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDE 141
           S+S AEKAPY EKA KRKAEYE  ++AY KNL          E   ES+KS SE++DE
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRSEINDE 142

[Close]

BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWK 82
           K   + T+  +  KKD N PKR  + FF+F+E+FR TFK++ P+VKA  AVGKAGG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 83  SLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDE 141
           S+S AEKAPY EKA KRKAEYE  ++AY KNL          E   ES+KS SE++DE
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRSEINDE 142

[Close]

BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWK 82
           K   + T+  +  KKD N PKR  + FF+F+E+FR TFK++ P+VKA  AVGKAGG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 83  SLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDE 141
           S+S AEKAPY EKA KRKAEYE  ++AY KNL          E   ES+KS SE++DE
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRSEINDE 142

[Close]

BLAST of Lcy07g011810 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-23
Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 23  KAEMKSTKSNRAMK---------KDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAV 82
           KAE +STK +   K         KD N PKRP++ FF+FME+FR T+KE+ P  K+  AV
Sbjct: 7   KAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66

Query: 83  GKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKS 142
           GKAGGEKWKSLSD+EKAPY  KA KRK EYE  ++AY K L      E   +   ES KS
Sbjct: 67  GKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKS 126

Query: 143 SSEVHDEAGQEASS 148
            SEV+DE   E  S
Sbjct: 127 VSEVNDEDDAEDGS 134

The following BLAST results are available for this feature:

BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	1.1e-24	54.24	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P93047	4.0e-22	52.24	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.5e-21	51.94	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	9.8e-21	50.39	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P27347	4.9e-20	47.48	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Lcy07g011810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5W3	5.5e-59	84.56	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1CIL2	9.4e-59	87.25	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I4V5	1.2e-58	83.89	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A1S3C2L9	7.0e-54	80.54	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	1.1e-51	76.43	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]

BLAST of Lcy07g011810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902242.1	5.1e-59	84.56	high mobility group B protein 1-like [Benincasa hispida]	[more]
XP_022947100.1	1.1e-58	84.56	high mobility group B protein 3-like [Cucurbita moschata]	[more]
XP_023533147.1	1.1e-58	84.56	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022140698.1	1.9e-58	87.25	high mobility group B protein 3-like [Momordica charantia]	[more]
XP_022971125.1	2.5e-58	83.89	high mobility group B protein 3-like [Cucurbita maxima]	[more]

BLAST of Lcy07g011810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.1	7.9e-26	54.24	high mobility group B1	[more]
AT3G51880.2	7.9e-26	54.24	high mobility group B1	[more]
AT3G51880.3	7.9e-26	54.24	high mobility group B1	[more]
AT3G51880.4	7.9e-26	54.24	high mobility group B1	[more]
AT1G20696.1	2.8e-23	52.24	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..149
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..147
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 42..108 e-value: 4.0889E-15 score: 63.8009
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 41..112 e-value: 3.1E-22 score: 89.9
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 42..111 e-value: 4.4E-20 score: 71.9
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 42..111 score: 18.049503
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 25..119 e-value: 2.3E-23 score: 84.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 35..114
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g011810.1	Lcy07g011810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin