Lcy06g021100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g021100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr06: 46100384 .. 46101022 (-)
RNA-Seq Expression	Lcy06g021100
Synteny	Lcy06g021100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGGCTTCTAATTGTAGGGTGGAGGGATATGTTTTTTTGGAGTCTCGATCCCTCTGCTGGCTTTTCCTGCACATCGTTTTTTCAGTTCCTCATCAATCCCTCCCCCGTTAGAGATTCTGTTTTTTCGTGCCTTTGGAAGGTTAAAGCTCCGAAGAAAGTCTTATTCTTTGTTTGGCAGGTCATATTGGGTCGTGTTAACACTTGTGATAGGCTTTTGAGAGTGAAGGCTCCTTTAGTAGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCACTTGTTATGGGATTGCGAGTTTGCTCGCTTTGTCTGGAGCCTCTTCTTTGAGGTCTTCGAGTTTCAGTTCGCGAGCCAGAGACGGTGTAGGGATTTGATCGAGGAGTTCCCCATCCATCCGCCATTTCGGGAGAGGGGAAAGTTACTTTGGCATGTGGGCGTGTGTGCTATTTTGTGGGGTTTATGGGGGGAAAGGAACAATAGAATTTTTAGAGGAGTCGAGAGACATCCTTGTGAGGTTTGGGATAATATTAGATTTCATGTTTCCTTATGGGCCTCGGTTACCAAGGCTTTTTGTAATTATCCTCTAGGTCTTGTTTTGTTAGAGTGGAAACCCTTCATTTAG

mRNA sequence

ATGCTATGGCTTCTAATTGTAGGGTGGAGGGATATGTTTTTTTGGAGTCTCGATCCCTCTGCTGGCTTTTCCTGCACATCGTTTTTTCAGTTCCTCATCAATCCCTCCCCCGTTAGAGATTCTGTTTTTTCGTGCCTTTGGAAGGTTAAAGCTCCGAAGAAAGTCTTATTCTTTGTTTGGCAGGTCATATTGGGTCGTGTTAACACTTGTGATAGGCTTTTGAGAGTGAAGGCTCCTTTAGTAGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCACTTGTTATGGGATTGCGAGTTTGCTCGCTTTGTCTGGAGCCTCTTCTTTGAGGTCTTCGAGTTTCAGTTCGCGAGCCAGAGACGGTGTAGGGATTTGATCGAGGAGTTCCCCATCCATCCGCCATTTCGGGAGAGGGGAAAGTTACTTTGGCATGTGGGCGTGTGTGCTATTTTGTGGGGTTTATGGGGGGAAAGGAACAATAGAATTTTTAGAGGAGTCGAGAGACATCCTTGTGAGGTTTGGGATAATATTAGATTTCATGTTTCCTTATGGGCCTCGGTTACCAAGGCTTTTTGTAATTATCCTCTAGGTCTTGTTTTGTTAGAGTGGAAACCCTTCATTTAG

Coding sequence (CDS)

ATGCTATGGCTTCTAATTGTAGGGTGGAGGGATATGTTTTTTTGGAGTCTCGATCCCTCTGCTGGCTTTTCCTGCACATCGTTTTTTCAGTTCCTCATCAATCCCTCCCCCGTTAGAGATTCTGTTTTTTCGTGCCTTTGGAAGGTTAAAGCTCCGAAGAAAGTCTTATTCTTTGTTTGGCAGGTCATATTGGGTCGTGTTAACACTTGTGATAGGCTTTTGAGAGTGAAGGCTCCTTTAGTAGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCACTTGTTATGGGATTGCGAGTTTGCTCGCTTTGTCTGGAGCCTCTTCTTTGAGGTCTTCGAGTTTCAGTTCGCGAGCCAGAGACGGTGTAGGGATTTGATCGAGGAGTTCCCCATCCATCCGCCATTTCGGGAGAGGGGAAAGTTACTTTGGCATGTGGGCGTGTGTGCTATTTTGTGGGGTTTATGGGGGGAAAGGAACAATAGAATTTTTAGAGGAGTCGAGAGACATCCTTGTGAGGTTTGGGATAATATTAGATTTCATGTTTCCTTATGGGCCTCGGTTACCAAGGCTTTTTGTAATTATCCTCTAGGTCTTGTTTTGTTAGAGTGGAAACCCTTCATTTAG

Protein sequence

MLWLLIVGWRDMFFWSLDPSAGFSCTSFFQFLINPSPVRDSVFSCLWKVKAPKKVLFFVWQVILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWASVTKAFCNYPLGLVLLEWKPFI

Homology

[Close]

BLAST of Lcy06g021100 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 51/195 (26.15%), Postives = 76/195 (38.97%), Query Frame = 0


Query: 5   LIVGWRDMFFWSLDPSAGFSCTSFFQFLI---NPSPVRDSVFSCLWKVKAPKKVLFFVWQ 64
           L+ G RD   W       FS  S ++ L     P P   S F+CLWKV+ P++V  F+W 
Sbjct: 247 LVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLW- 306

Query: 65  VILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQF 124
            ++G         R +  L     C +C+   E++ H+L DC     +W         + 
Sbjct: 307 -LVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIW--------VRV 366

Query: 125 ASQRRCRDLIEEFPIHPPFRERG------KLLWHVGVCAILWGLWGERNNRIFRGVERHP 184
             QRR +    +      +   G       + W      I+W  W  R   IF   E   
Sbjct: 367 VPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFG--ENTK 426

Query: 185 CEVWDNIRFHVSLWA 191
           C   D ++F V  WA
Sbjct: 427 CR--DRVKF-VKEWA 426

[Close]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL
Match: A0A5D3E255 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold588G00180 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MLW--LLIVGWRDMFFWSLDPSAGFSCTSFFQFLINPSPVRDSVFSCLWKVKAPKKVLFF 60
           MLW   L  G R++  WS +PS GFS  S F  L++PSP R+ VF  +W++K  KKV FF
Sbjct: 177 MLWHFHLGEGERNVHVWSANPSQGFSSKSLFSLLLDPSPTREFVFYAVWRIKVCKKVRFF 236

Query: 61  VWQVILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFE 120
            WQV+L R N  DRL+R   P     CCILCRKA+E+LDHLLWDC++AR VW  F + F+
Sbjct: 237 TWQVLLDRANIVDRLVRRGEPRWSSNCCILCRKAKEDLDHLLWDCQYARAVWGSFLQEFD 296

Query: 121 FQFASQRRCRDLIEEF 135
            + A  R  R  IEEF
Sbjct: 297 VRLAGLRTVRKTIEEF 312

[Close]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-28
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 94  ENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIEEFPIHPPFRERGKLLWHVGVC 153
           E+LDHLL     A  +W  F + F   +A  R  R +IEEF ++ P  ERG+ LW   VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 154 AILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWASVTKAFCNYPLGLVLLEWKPFI 213
           AILW LW E N R+F GVER   E+W  IR+HVSLW S++K FCNYPL ++L  W  F+
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATFV 172

[Close]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL
Match: A0A438KG54 (Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 75/198 (37.88%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 15  WSLDPSAGFSCTSFFQFL---INPSPVRDSVFSCLWKVKAPKKVLFFVWQVILGRVNTCD 74
           WSL  S  FS  SFF  L   +NP     + F  LW  K P KV    W V  G+VNT D
Sbjct: 395 WSLSSSGSFSVKSFFYALSKDLNPLKFLPAKF--LWSSKVPSKVKALAWLVAHGKVNTND 454

Query: 75  RL-LRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDL 134
           +L LR     + P  CILC+   E++DHL   C     +W   F +    +   R   D+
Sbjct: 455 KLQLRRPYKALCPQWCILCKGNGESIDHLFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDM 514

Query: 135 IEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWA 194
           +           RGK+LW +    ++W +W ERNNRIF    R    VWD IRF+ SLWA
Sbjct: 515 LVISFKGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWA 574

Query: 195 SVTKAFCNYPLGLVLLEW 209
           S T+AF   PL ++ + W
Sbjct: 575 SCTEAFRGVPLSILQINW 590

[Close]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 48  KVKAPKKVLFFVWQVILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFAR 107
           ++K PKK  FF+ QV+LG +NT DRL++    LVGPF C LC+KA+E+LD+L WDC+  R
Sbjct: 121 RIKVPKKARFFIRQVLLGWINTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHER 180

Query: 108 FVWSLFFEVFEFQFASQRRCRDLIEEFPIHPPFRERGKLLWHVGVCAIL 157
            VW+ F + F+  F  QR  R  IEEF +HPPFRE+  +LW  GVCA++
Sbjct: 181 AVWNSFLQEFDSIFVGQRSVRVTIEEFLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL
Match: A0A438E2J1 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_108403 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 74/196 (37.76%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 15  WSLDPSAGFSCTSFFQFLINPS-PVRDSVFSCLWKVKAPKKVLFFVWQVILGRVNTCDRL 74
           WSL  S  FS  SFF  L   S P+       LW  K P KV    W V  G+VNT D+L
Sbjct: 110 WSLSSSGSFSVKSFFYALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVTHGKVNTNDKL 169

Query: 75  -LRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIE 134
            LR     + P  CILC++  E++DHL   C     +W   F +    +   R   D++ 
Sbjct: 170 QLRRPYKALCPQWCILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLV 229

Query: 135 EFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWASV 194
                     RGK+LW +    ++W +W ERNNRIF    R    VWD IRF+ SLWAS 
Sbjct: 230 ISFKGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASC 289

Query: 195 TKAFCNYPLGLVLLEW 209
           T+AF   PL ++ + W
Sbjct: 290 TEAFRGVPLSILQINW 305

[Close]

BLAST of Lcy06g021100 vs. NCBI nr
Match: XP_024195633.1 (uncharacterized protein LOC112198748 [Rosa chinensis])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-31
Identity = 76/200 (38.00%), Postives = 109/200 (54.50%), Query Frame = 0


Query: 17  LDPSAGFSCTSFFQFLINPSPVRDSVF---SCLWKVKAPKKVLFFVWQVILGRVNTCDRL 76
           L+P+  FSC SF  FLI  S   D +F     +WKVK P KV    W V+LG+ NTCD L
Sbjct: 43  LEPNGKFSCKSFHSFLI--SGGSDPIFPPAKFIWKVKVPTKVKILGWLVVLGKTNTCDVL 102

Query: 77  LRVK-APLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIE 136
            R +      P  CILC+   E+ DH+   CE A F+W   F      + +     DL+ 
Sbjct: 103 QRRRPGSCFSPHWCILCKAQGESADHVFVHCEVANFLWKKLFWEARVDWTTPLERNDLLR 162

Query: 137 EFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFR---GVERHPCEVWDNIRFHVSLW 196
           E PI     ++ + LW  GV A++W +W ERN R+F    GVE+   ++W+ ++F  SLW
Sbjct: 163 ENPIAFGKGKKARTLWGCGVLAVVWVIWMERNKRLFENYGGVEKE--DLWERVKFWASLW 222

Query: 197 ASVTKAFCNYPLGLVLLEWK 210
            S++K F +Y L  ++L W+
Sbjct: 223 VSISKEFKDYNLSSIILNWQ 238

[Close]

BLAST of Lcy06g021100 vs. NCBI nr
Match: TYK29954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-30
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MLW--LLIVGWRDMFFWSLDPSAGFSCTSFFQFLINPSPVRDSVFSCLWKVKAPKKVLFF 60
           MLW   L  G R++  WS +PS GFS  S F  L++PSP R+ VF  +W++K  KKV FF
Sbjct: 177 MLWHFHLGEGERNVHVWSANPSQGFSSKSLFSLLLDPSPTREFVFYAVWRIKVCKKVRFF 236

Query: 61  VWQVILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFE 120
            WQV+L R N  DRL+R   P     CCILCRKA+E+LDHLLWDC++AR VW  F + F+
Sbjct: 237 TWQVLLDRANIVDRLVRRGEPRWSSNCCILCRKAKEDLDHLLWDCQYARAVWGSFLQEFD 296

Query: 121 FQFASQRRCRDLIEEF 135
            + A  R  R  IEEF
Sbjct: 297 VRLAGLRTVRKTIEEF 312

[Close]

BLAST of Lcy06g021100 vs. NCBI nr
Match: XP_040371876.1 (uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371877.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371878.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371879.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371880.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371881.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis])

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-30
Identity = 75/203 (36.95%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 15  WSLDPSAGFSCTSFFQFLINPSPVRDSVF---SCLWKVKAPKKVLFFVWQVILGRVNTCD 74
           W L+P+  FSC SF  FL   S   D +F     +W VKAP KV    W V+LG+ NTCD
Sbjct: 276 WKLEPTGNFSCKSFHIFL--TSGASDPIFDPAKFIWNVKAPTKVKILGWLVVLGKTNTCD 335

Query: 75  RLLRVKAP--LVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRD 134
            +L+ K P     P  CILCR   E+ DH+   C+    +W   F      + +  +  +
Sbjct: 336 -VLQKKRPGSCFSPHWCILCRNHGESADHVFVHCDVTISLWKKLFREARVDWTNPLQRSE 395

Query: 135 LIEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFR---GVERHPCEVWDNIRFHV 194
           L+ E P+     ++ K LW  GV A+ W +W ERN RIF    G ER   ++W+ ++F  
Sbjct: 396 LLREKPLAFGKGKKAKTLWGCGVLAVCWVVWLERNRRIFENYGGSERE--DMWERVKFWA 455

Query: 195 SLWASVTKAFCNYPLGLVLLEWK 210
           SLW S++K F +Y L  ++L W+
Sbjct: 456 SLWVSISKEFKDYSLSSIILNWQ 473

[Close]

BLAST of Lcy06g021100 vs. NCBI nr
Match: XP_040371882.1 (uncharacterized protein LOC112192237 isoform X2 [Rosa chinensis])

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-30
Identity = 75/203 (36.95%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 15  WSLDPSAGFSCTSFFQFLINPSPVRDSVF---SCLWKVKAPKKVLFFVWQVILGRVNTCD 74
           W L+P+  FSC SF  FL   S   D +F     +W VKAP KV    W V+LG+ NTCD
Sbjct: 244 WKLEPTGNFSCKSFHIFL--TSGASDPIFDPAKFIWNVKAPTKVKILGWLVVLGKTNTCD 303

Query: 75  RLLRVKAP--LVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRD 134
            +L+ K P     P  CILCR   E+ DH+   C+    +W   F      + +  +  +
Sbjct: 304 -VLQKKRPGSCFSPHWCILCRNHGESADHVFVHCDVTISLWKKLFREARVDWTNPLQRSE 363

Query: 135 LIEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFR---GVERHPCEVWDNIRFHV 194
           L+ E P+     ++ K LW  GV A+ W +W ERN RIF    G ER   ++W+ ++F  
Sbjct: 364 LLREKPLAFGKGKKAKTLWGCGVLAVCWVVWLERNRRIFENYGGSERE--DMWERVKFWA 423

Query: 195 SLWASVTKAFCNYPLGLVLLEWK 210
           SLW S++K F +Y L  ++L W+
Sbjct: 424 SLWVSISKEFKDYSLSSIILNWQ 441

[Close]

BLAST of Lcy06g021100 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 8.7e-28
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 94  ENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIEEFPIHPPFRERGKLLWHVGVC 153
           E+LDHLL     A  +W  F + F   +A  R  R +IEEF ++ P  ERG+ LW   VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 154 AILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWASVTKAFCNYPLGLVLLEWKPFI 213
           AILW LW E N R+F GVER   E+W  IR+HVSLW S++K FCNYPL ++L  W  F+
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATFV 172

[Close]

BLAST of Lcy06g021100 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-08
Identity = 38/166 (22.89%), Postives = 68/166 (40.96%), Query Frame = 0


Query: 37  PVRDSVFSCLWKVKAPKKVLFFVWQVILGRVNTCDRLLRVKAPLVGPFCCILCRKAEENL 96
           P  + ++  +WK +   K+  F+W+ +   +     L      L     CI C   +E +
Sbjct: 248 PSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGAL--AYRHLSKESACIRCPSCKETV 307

Query: 97  DHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIEEFPI------HPPFRERGKLL-WH 156
           +HLL+ C FAR  W++           +      +  + +      +P + +  +L+ W 
Sbjct: 308 NHLLFKCTFARLTWAI--SSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPW- 367

Query: 157 VGVCAILWGLWGERNNRIFRGVERHPCEVWDNIRFHVSLWASVTKA 196
                +LW LW  RN  +FRG E +  EV       +  W   T+A
Sbjct: 368 -----LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEA 403

[Close]

BLAST of Lcy06g021100 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 41/156 (26.28%), Postives = 58/156 (37.18%), Query Frame = 0


Query: 33  INPSPVRDSVFSCLW-KVKAPKKVLFFVWQVILGRVNTCDRLLRVKAPLVGPFCCILCRK 92
           +NP   R   F  +W K K PK   F  W  +  R++T DR+  +    + P  C+ C  
Sbjct: 34  LNPIGERVDWFKAIWFKGKIPKHA-FIAWVNMRHRLHTKDRM--ISWGFIFPPLCLFCNT 93

Query: 93  AEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRCRDLIEEFPIHPPFRERGKLLWHVG 152
            +E   HL +DCEFAR VW  F                      + PP      + W   
Sbjct: 94  HDETRQHLFFDCEFAREVWIYF-----------------TSRVHVFPPLLFEDGIRWLKN 153

Query: 153 VC--------------AILWGLWGERNNRIFRGVER 174
            C              A ++ +W ERN R+     R
Sbjct: 154 PCQDKNVTTILRLSHHASVYTIWKERNARLHDSASR 169

[Close]

BLAST of Lcy06g021100 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-08
Identity = 43/166 (25.90%), Postives = 69/166 (41.57%), Query Frame = 0


Query: 11  DMFFWSLD---PSAGFSCTSFFQFLINPSPVRDSVFSCLWKVKAPKKVLFFVWQVILGRV 70
           D F W  D   PS  FS    +  L +P          +W      K  F  W V   R+
Sbjct: 96  DSFLWKTDLHAPSNRFSAPRTWSAL-HPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRL 155

Query: 71  NTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVWSLFFEVFEFQFASQRRC 130
           +T DRL      +  P  C+LC   +++  HL ++C+F+  VW  F         +Q   
Sbjct: 156 HTRDRLQNWGLSI--PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQ--L 215

Query: 131 RDLIEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNNRIFRGVER 174
            D +  + + P   +   L+  +   + ++ +W ERN R+  GV R
Sbjct: 216 MDCL-NWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSR 255

[Close]

BLAST of Lcy06g021100 vs. TAIR 10
Match: AT1G33710.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 48/164 (29.27%), Postives = 68/164 (41.46%), Query Frame = 0


Query: 8   GWRDMFFWSLDPSA--GFSCTSFFQFLINPSPVRDSVFSCLWKVKAPKKVLFFVWQVILG 67
           G  D++ W ++     GFS    +  L   S V  S    +W   A  K  F +W   L 
Sbjct: 13  GELDVYDWVVEDKLCNGFSSAKTWAALRPRSDV-VSWAKTVWFKGATPKHAFHMWVTNLD 72

Query: 68  RVNTCDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARFVW---SLFFEVFEFQFA 127
           R+ T  RL      L     C LC    E+ DHL   CEFA F+W   S+  E+  F F 
Sbjct: 73  RLPTKTRLASWGMQL--QTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAFSFV 132

Query: 128 SQRRCRD-LIEEFPIHPPFRERGKLLWHVGVCAILWGLWGERNN 166
                 D  ++     PP       L  + V ++L+ +W +RNN
Sbjct: 133 VWNDLMDWTLQRNRRSPP------TLRKLIVQSVLYAIWKQRNN 167

[Close]

BLAST of Lcy06g021100 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.2e-04
Identity = 31/101 (30.69%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 86  CILCRKAEENLDHLLWDCEFARFVWSLF-------FEVFEFQFASQRRCRDLIEEFPIHP 145
           C+ C  + E ++HLL+ C FAR VW++         E  +  +A+     +L  E    P
Sbjct: 12  CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEI---P 71

Query: 146 PFRERGKLL-WHVGVCAILWGLWGERNNRIFRGVERHPCEV 179
              + G L+ W      +LW LW  RN  +F+G E    EV
Sbjct: 72  KLGKIGNLVPW------LLWRLWKSRNELMFKGKEYDAPEV 103

The following BLAST results are available for this feature:

BLAST of Lcy06g021100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	4.2e-09	26.15	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lcy06g021100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E255	1.2e-30	51.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold58...	[more]
A0A1S4DXB1	4.2e-28	49.58	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A438KG54	1.6e-27	37.88	Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1	[more]
A0A5D3CHC7	3.5e-27	52.29	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1	[more]
A0A438E2J1	3.5e-27	37.76	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_108403 PE=4...	[more]

BLAST of Lcy06g021100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024195633.1	1.7e-31	38.00	uncharacterized protein LOC112198748 [Rosa chinensis]	[more]
TYK29954.1	2.4e-30	51.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_040371876.1	5.4e-30	36.95	uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371877.1...	[more]
XP_040371882.1	5.4e-30	36.95	uncharacterized protein LOC112192237 isoform X2 [Rosa chinensis]	[more]
XP_016900613.1	8.7e-28	49.58	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]

BLAST of Lcy06g021100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.6e-08	22.89	Ribonuclease H-like superfamily protein	[more]
AT2G02520.1	2.1e-08	26.28	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G04650.1	3.6e-08	25.90	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G33710.1	1.1e-04	29.27	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT2G34320.1	3.2e-04	30.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 23..110 e-value: 1.2E-17 score: 64.3
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 29..133
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 29..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g021100.1	Lcy06g021100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0003824	catalytic activity