Lcy06g012020 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCGGAATCGTTCAGGTACGTTGAAATTCATCAAAGATCGTATTTGGAAACAGGTACATGGGTGGAAAGGTAAGTTTTTTTCCACAGGTGGGAAAGAAGTTCCCTTGAAATCTATTGTGCAAGTGATCCCATGTTATACAATGAACTGTTTCCGTCTGCTCAAGTGTTTGATTAGAGAGATTCATCATCTTATGGCTAATTTTTGGTGGGTGGGGTCTGAAACATCTAAGCGCATACATTGGCTGAGTTGGGAGAAGTTTTGCCTACCTAAGCGTATGGGGGCCTGGGTTTCAGAAATATGGATTTGTTTAATCAAGCTCTCTTGGCCAAACAGTGCTAGCGTGTTTTTAGTGATCCTTCATCATTTCTCAGTATGGTTCTTAAAGGTCGATATTTCCCTGAGACGGATTTCTTTGCAGCAGGCTTGGGGGCCCACCCCTCATTTGTTTGGCGTAGCCTGTTATAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA ATGCCTCGGAATCGTTCAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA ATGCCTCGGAATCGTTCAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA MPRNRSGRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEEKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSLHVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFELVVVFWRQSGI Homology
BLAST of Lcy06g012020 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13 Identity = 54/211 (25.59%), Postives = 93/211 (44.08%), Query Frame = 0
BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 5.5e-48 Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 0
BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 3.9e-38 Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = 0
BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A2N9FT78 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 5.7e-37 Identity = 90/219 (41.10%), Postives = 124/219 (56.62%), Query Frame = 0
BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A803QQT2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 9.7e-37 Identity = 77/207 (37.20%), Postives = 122/207 (58.94%), Query Frame = 0
BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A2H5Q8Y3 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_207130 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 2.8e-36 Identity = 84/228 (36.84%), Postives = 120/228 (52.63%), Query Frame = 0
BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia]) HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47 Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 0
BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis]) HSP 1 Score: 168.3 bits (425), Expect = 8.1e-38 Identity = 88/230 (38.26%), Postives = 124/230 (53.91%), Query Frame = 0
BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024035599.1 (uncharacterized protein LOC112096407 [Citrus clementina]) HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36 Identity = 80/234 (34.19%), Postives = 119/234 (50.85%), Query Frame = 0
BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024956542.1 (uncharacterized protein LOC112498908 [Citrus sinensis]) HSP 1 Score: 163.7 bits (413), Expect = 2.0e-36 Identity = 86/234 (36.75%), Postives = 123/234 (52.56%), Query Frame = 0
BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_030502765.1 (uncharacterized protein LOC115717936 [Cannabis sativa]) HSP 1 Score: 163.3 bits (412), Expect = 2.6e-36 Identity = 81/234 (34.62%), Postives = 128/234 (54.70%), Query Frame = 0
BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17 Identity = 69/247 (27.94%), Postives = 106/247 (42.91%), Query Frame = 0
BLAST of Lcy06g012020 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06 Identity = 27/94 (28.72%), Postives = 42/94 (44.68%), Query Frame = 0
BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 47.0 bits (110), Expect = 2.5e-05 Identity = 25/66 (37.88%), Postives = 33/66 (50.00%), Query Frame = 0
BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 46.2 bits (108), Expect = 4.3e-05 Identity = 20/62 (32.26%), Postives = 32/62 (51.61%), Query Frame = 0
BLAST of Lcy06g012020 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04 Identity = 22/69 (31.88%), Postives = 33/69 (47.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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