Lcy06g012020 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g012020
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr06: 14875893 .. 14877078 (-)
RNA-Seq ExpressionLcy06g012020
SyntenyLcy06g012020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGAATCGTTCAGGTACGTTGAAATTCATCAAAGATCGTATTTGGAAACAGGTACATGGGTGGAAAGGTAAGTTTTTTTCCACAGGTGGGAAAGAAGTTCCCTTGAAATCTATTGTGCAAGTGATCCCATGTTATACAATGAACTGTTTCCGTCTGCTCAAGTGTTTGATTAGAGAGATTCATCATCTTATGGCTAATTTTTGGTGGGTGGGGTCTGAAACATCTAAGCGCATACATTGGCTGAGTTGGGAGAAGTTTTGCCTACCTAAGCGTATGGGGGCCTGGGTTTCAGAAATATGGATTTGTTTAATCAAGCTCTCTTGGCCAAACAGTGCTAGCGTGTTTTTAGTGATCCTTCATCATTTCTCAGTATGGTTCTTAAAGGTCGATATTTCCCTGAGACGGATTTCTTTGCAGCAGGCTTGGGGGCCCACCCCTCATTTGTTTGGCGTAGCCTGTTATAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA

mRNA sequence

ATGCCTCGGAATCGTTCAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA

Coding sequence (CDS)

ATGCCTCGGAATCGTTCAGGACGTCATCTTTTGGTGCGTGGATGCCGTTGGAGGATAGGGAATGGGTGTTCCATTCCTATCTATGGTTCGAATTGGCTGCCAAATGAATTTTCCCTCAGAGTTCACTCGTATCCTTCATTGCCAGCAAACAGTCGGGTGAGTGACTTGTTTACTACCTCGCGTCAATGGGATGAAGAAAAGGTTCAGACTCATTTTTCTCTTTCGGATTGTGATTCCATAATGAAAATCCCTTTACATCTGGGATTAGCCGATGATAGTCTCATATGGCACTTTGAGAAGAATGGAATTTATTCGGTCAGAAGTGGGTATCGTCTTGCCCTATCTATCGGCCTTCAGGATCAATCGTCATCCTCTGACTCAGAGCAGGAACGGACGTGGTGGGTTGGTATCTGGAAAATGCGACTTCCAAGCAAGATCAAGTTTTTCTTGTGGCGATTGTCTCATAACCACCTGCCCACAAGAGACAACCACTTGAGGAAAGGTATTGATGTCTCTAATTCCTGTGTTTTCTGTAATCTGTGCCTGGAGAATAGCCTTCATGTTTTCTGGTCCTGCCCTTTTATTAAGAATTGGTGGCTTTGTTCTAAGTTCTCAGATCTTTATCAATCCATATTTAGCCATAGCTTTAATGGGATCTTGTGGTTTGTTAAAGACAAGTTGGTGCCACTAGATTTTGAGTTGGTTGTTGTTTTTTGGCGGCAGTCTGGAATATGA

Protein sequence

MPRNRSGRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEEKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSLHVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFELVVVFWRQSGI
Homology
BLAST of Lcy06g012020 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13
Identity = 54/211 (25.59%), Postives = 93/211 (44.08%), Query Frame = 0

Query: 8   RHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHS--YPSLPANSRVSDLFTTSRQWDE 67
           R ++  G  W  G+G  I  +   W+  +  L + +   P+        DL+   R WD 
Sbjct: 166 RDVVSHGVGWIPGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDF 225

Query: 68  EKVQTHFSLSDCDSIMKIPLHLGL-ADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSS 127
            K+  + + +    +  + L L   A D L W F ++G +SVRS Y +     +   + +
Sbjct: 226 AKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMA 285

Query: 128 SDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLEN 187
           S       ++  +WK+R+P ++K FLW + +  + T +   R+ +  SN C  C   +E+
Sbjct: 286 S-------FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVES 345

Query: 188 SLHVFWSCPFIKNWWLCSKFSDLYQSIFSHS 216
            LHV   CP     W+        Q  FS S
Sbjct: 346 MLHVLRDCPAQLGIWVRVVPQRRQQGFFSKS 369

BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 5.5e-48
Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSR-QWDE 66
           GR LL +G RWRIGNG S+ IYG NW+PN+ +L++ S P LP  SRVS L       W  
Sbjct: 707 GRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQG 766

Query: 67  EKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQS-SS 126
           + V+  F+  +   I+ IP+  G  +D LIW++EK G+YSVRSGY++AL      Q+ SS
Sbjct: 767 DVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCVQAPSS 826

Query: 127 SDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLEN 186
           S SE+ R WW G WKM +P+KIK FLWRL  + LPT  N  ++G++++N C FC    E+
Sbjct: 827 SSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGED 886

Query: 187 SLHVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDF-ELVVVFW 240
           S+H+FW C F +  W+ SKF  L   +       IL    + L   DF EL VV W
Sbjct: 887 SIHLFWICKFAEALWINSKFGKLSPFL-------ILRESHESLSKADFEELCVVIW 935

BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-38
Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = 0

Query: 7    GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
            G+ L+++G RWR+GNG S+ +    WLP   + +V+  PSLPAN  V+DL     QWDE 
Sbjct: 1216 GKKLILKGYRWRVGNGESVRVLEDPWLPRPVTFKVYDQPSLPANLYVTDLKMADGQWDEG 1275

Query: 67   KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
             +++ F+ +D D I+ IP      +D ++WH+ KNG YSV+SGYR+A S+  +   S+  
Sbjct: 1276 SIRSIFNPTDADLILGIPCSDWDFEDKILWHYSKNGEYSVKSGYRMAASLTTEQHQSNEH 1335

Query: 127  SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
            S  +  WW  +W++  P K+K F+W+++HN LP   N  ++GI  S  C  C+  +E S+
Sbjct: 1336 SIVQ--WWKKLWRLNFPPKVKHFVWKVAHNWLPANVNLAKRGIASSVVCSRCSSHVEESV 1395

Query: 187  -HVFWSCPFIKNWWLCSKFSD 207
             H  W C   K +W  S   D
Sbjct: 1396 AHALWECKASKGYWRVSGLYD 1414

BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A2N9FT78 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.7e-37
Identity = 90/219 (41.10%), Postives = 124/219 (56.62%), Query Frame = 0

Query: 8   RHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHS-YPSLPANSRVSDLFTTS-RQWDE 67
           + L++ G  WR+GNG  IPI  S WLP E   +V S  P  P +++V+DL   S  +WD 
Sbjct: 43  KKLILAGTSWRVGNGQKIPIKDSKWLPEEGHRKVISPVPDFPHDAKVADLIKGSPPEWDT 102

Query: 68  EKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSS 127
           EK++  F   D D+I++IPL      D LIWH  KNG +SVRSGY L L    ++Q+S+ 
Sbjct: 103 EKIRGSFLPYDADAILQIPLSYRSPPDKLIWHAIKNGKFSVRSGYHLLLQ---EEQNSNP 162

Query: 128 DSEQER---TWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCL 187
            S Q+R     W  IW MR+P+KI+ F+WR  H  LPT+   +R+ +  S  C  C    
Sbjct: 163 GSSQDREIDPLWKVIWSMRVPAKIRSFIWRACHESLPTKMGLMRRKVMDSPWCASCGTGT 222

Query: 188 ENSLHVFWSCPFIKNWWLCS-KFSDLYQSIFSHSFNGIL 221
           E+ LH  WSCP +   W    KFSDL Q +   SF  ++
Sbjct: 223 EDCLHALWSCPLLNTTWSSQHKFSDL-QKVTHSSFTELV 257

BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A803QQT2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.7e-37
Identity = 77/207 (37.20%), Postives = 122/207 (58.94%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
           G+ L+++G RWR+GNG S+ +    WLP   + +V+  PSLPAN  V+DL     QWDE 
Sbjct: 261 GKKLILKGYRWRVGNGESVRVLEDPWLPRPVTFKVYDQPSLPANLYVTDLKLADGQWDEG 320

Query: 67  KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
            +++ F+ +D D I+ IP      +D ++WH+ K G YSV+SGYR+A S   +   S+  
Sbjct: 321 FIRSIFNPTDVDLILGIPCSDWDFEDKILWHYSKYGEYSVKSGYRMAASFTTEQHQSNEH 380

Query: 127 SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
           S  +  WW  +W++++P K+K F+W+++HN LP   N  ++GI  S  C  C+  ++ S+
Sbjct: 381 SIVQ--WWKKLWRLKIPPKVKHFVWKVAHNWLPANVNLAKRGIASSVVCSRCSSHVDESV 440

Query: 187 -HVFWSCPFIKNWWLCS-KFSDLYQSI 212
            H  W C   K +W  S  + DL Q +
Sbjct: 441 AHALWECKASKGYWRVSGLYDDLKQML 465

BLAST of Lcy06g012020 vs. ExPASy TrEMBL
Match: A0A2H5Q8Y3 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_207130 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.8e-36
Identity = 84/228 (36.84%), Postives = 120/228 (52.63%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
           GR ++  G RWRIGNG  + I+ +NW+P  F+ +    P+LP+ + VS+L      WDEE
Sbjct: 34  GRQIICAGSRWRIGNGQDVHIHKANWIPKPFTFKPVIKPTLPSKALVSELINGENCWDEE 93

Query: 67  KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
            +  HF   D D I +IPL     +D LIWHF K+G Y+V+SGY+ AL+I      SS  
Sbjct: 94  LIYRHFDKMDADVITQIPLPRRSREDELIWHFGKSGQYTVKSGYQTALNIRFPAMPSS-- 153

Query: 127 SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
           SE  +  W  IW + LP KI+ F+WR + N LP+ +N  ++ I    +C  C + +EN  
Sbjct: 154 SEFSKNEWNIIWSLALPKKIRIFVWRAAKNLLPSDENLWKRKIVQEPTCQLCKMGIENVF 213

Query: 187 HVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFEL 235
           H    C   K  W  S F +  Q+        +L  VK      D +L
Sbjct: 214 HALVDCKAAKKVWRLSLFDNDIQAAPGQDILSLLHGVKRMRSNADVDL 259

BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47
Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSR-QWDE 66
           GR LL +G RWRIGNG S+ IYG NW+PN+ +L++ S P LP  SRVS L       W  
Sbjct: 707 GRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQG 766

Query: 67  EKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQS-SS 126
           + V+  F+  +   I+ IP+  G  +D LIW++EK G+YSVRSGY++AL      Q+ SS
Sbjct: 767 DVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCVQAPSS 826

Query: 127 SDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLEN 186
           S SE+ R WW G WKM +P+KIK FLWRL  + LPT  N  ++G++++N C FC    E+
Sbjct: 827 SSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGED 886

Query: 187 SLHVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDF-ELVVVFW 240
           S+H+FW C F +  W+ SKF  L   +       IL    + L   DF EL VV W
Sbjct: 887 SIHLFWICKFAEALWINSKFGKLSPFL-------ILRESHESLSKADFEELCVVIW 935

BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 168.3 bits (425), Expect = 8.1e-38
Identity = 88/230 (38.26%), Postives = 124/230 (53.91%), Query Frame = 0

Query: 7    GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
            GR ++ +G RWRIGNG  I I+  NWLP   + R     SLP +S V+DL     QWDE 
Sbjct: 949  GRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKADNQWDEI 1008

Query: 67   KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
            K++ HF   D   I+KIPL    A+D ++WH++K G YSV+SGY+LAL     D  S+S 
Sbjct: 1009 KLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLALRSKFPD--STSC 1068

Query: 127  SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
            +E    +W  +W + LP K+K F+WR S+N LP+ +N  ++ +    +C  C L +E   
Sbjct: 1069 TEASHKYWSALWTLELPEKLKIFMWRASNNLLPSAENLWKRKVVEEPTCKRCKLSVETIS 1128

Query: 187  HVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFELVV 237
            H    C   +  WL S FS       S      L  +  +L   D EL+V
Sbjct: 1129 HALLECKAARKIWLQSPFSAPRLEANSQDIFSTLQNMAKELRKSDLELMV 1176

BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024035599.1 (uncharacterized protein LOC112096407 [Citrus clementina])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36
Identity = 80/234 (34.19%), Postives = 119/234 (50.85%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
           GR +L +G RWRIGNG  I I  SNW+P   + ++   PSLP  ++VS+L   ++QW+E 
Sbjct: 642 GRQVLQKGTRWRIGNGEKIQIQASNWIPRPTTFKLIVEPSLPTGAKVSELILPNQQWNES 701

Query: 67  KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
            +   F+  D D I  I L     +D +IWH+++ G+YSV+SGY+LAL I   +  +SS 
Sbjct: 702 MINQSFARMDADIIKSILLPRTPQEDEIIWHYDRKGLYSVKSGYQLALKIKFPEPPTSSA 761

Query: 127 SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
              +   W  +WK+ LP KIK F+W+ +   LPT +N  R+ I     C  C    E+  
Sbjct: 762 GASQE--WQNLWKLNLPGKIKIFVWKAAKTFLPTAENLWRRKILQEPICTICKEGREDVF 821

Query: 187 HVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFELVVVFWR 241
           H    C   +  W C+      QSI        +  +  K    + + V   WR
Sbjct: 822 HALMECKLARKIWRCTDMEATVQSIRRDDMLSTMHSLMRKGAKFEIDYVASIWR 873

BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_024956542.1 (uncharacterized protein LOC112498908 [Citrus sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-36
Identity = 86/234 (36.75%), Postives = 123/234 (52.56%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
           GR ++  G RWRIGNG  + I+ +NW+P  F+ +    P++P+ + VS+L      WDEE
Sbjct: 684 GRQIICGGSRWRIGNGQDVHIHKANWIPKPFTFKPVIKPTMPSEALVSELINGENCWDEE 743

Query: 67  KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
            +  HF   D D I +IPL   L +D LIWHF K+G Y+V+SGY+ AL I      SSS+
Sbjct: 744 LIYKHFDKMDADVITQIPLPRRLREDELIWHFGKSGQYTVKSGYQRALKIRFPAMPSSSE 803

Query: 127 SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
           S +    W  IW + LP KI+ F+WR + N LP+ +N  ++ I    +C  C + +EN  
Sbjct: 804 SSKNE--WNIIWSLALPKKIRIFVWRAAKNLLPSAENLWKRKIVQEPTCQLCKMGIENVF 863

Query: 187 HVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFEL-VVVFW 240
           H    C   K  W  S F    Q+        +L  VK      D +L  V+ W
Sbjct: 864 HALVDCKAAKKVWRLSLFYIDIQAAPGQDILSLLHGVKRMRSNADVDLFAVMLW 915

BLAST of Lcy06g012020 vs. NCBI nr
Match: XP_030502765.1 (uncharacterized protein LOC115717936 [Cannabis sativa])

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-36
Identity = 81/234 (34.62%), Postives = 128/234 (54.70%), Query Frame = 0

Query: 7    GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSRVSDLFTTSRQWDEE 66
            G+ LL++G RWR+G+G +I      W+P   + + + +     N  V+DL +  RQWD  
Sbjct: 816  GKELLLKGLRWRVGSGLTINCATDAWMPGNTTFKPYFFKGADPNLMVADLISEQRQWDLI 875

Query: 67   KVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSIGLQDQSSSSD 126
             +Q +FS +D D I+ IPL L   DD LIW     GIY+V+SGY+LA+S+  QD ++SS 
Sbjct: 876  SLQANFSQADVDRILSIPLSLFPHDDVLIWSHSFTGIYNVKSGYQLAVSLAEQDDTASSS 935

Query: 127  SEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSL 186
            S +   WW   WK+++P K++ F+W++ H+ LP      R+ I  S  C  CN   E+  
Sbjct: 936  SMEH--WWSTFWKVKIPPKVRIFVWKVFHSTLPVAAELYRRHIATSPYCTICNSAEESIT 995

Query: 187  HVFWSCPFIKNWWLCSKFSDLYQSIFSHSFNGILWFVKDKLVPLDFE-LVVVFW 240
            H  +SCP  K  W  S  +  + ++   +   IL  +   L   ++E  +V+ W
Sbjct: 996  HALFSCPRAKTVWDLSPLNIDFNTLRQTASADILLHLSTVLTTSEYEQFLVICW 1047

BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 69/247 (27.94%), Postives = 106/247 (42.91%), Query Frame = 0

Query: 7   GRHLLVRGCRWRIGNGCSIPIYGSNWLPNEFSLRVHSYPSLPANSR-------VSDLFTT 66
           G  LL +G R  IG+G +I I   N         V S+P  P N+        +++LF  
Sbjct: 30  GIALLKKGTRHLIGDGQNIRIGLDN--------IVDSHPPRPLNTEETYKEMTINNLFER 89

Query: 67  SRQ---WDEEKVQTHFSLSDCDSIMKIPLHLGLADDSLIWHFEKNGIYSVRSGYRLALSI 126
                 WD+ K+      SD   I +I L      D +IW++   G Y+VRSGY L    
Sbjct: 90  KGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHD 149

Query: 127 GLQDQSSSSDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCV 186
              +  + +           IW + +  K+K FLWR     L T +    +G+ +  SC 
Sbjct: 150 PSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCP 209

Query: 187 FCNLCLENSLHVFWSCPFIKNWWLCSKFSDLYQSIFSHSF----NGILWFVKDKLVPLDF 240
            C+   E+  H  ++CPF    W  S  S +   + S+ F    + IL FV+D  +  DF
Sbjct: 210 RCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMS-DF 267

BLAST of Lcy06g012020 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06
Identity = 27/94 (28.72%), Postives = 42/94 (44.68%), Query Frame = 0

Query: 106 VRSGYRLALSIGLQDQSSSSDSEQERTWWVGIWKMRLPSKIKFFLWRLSHNHLPTRDNHL 165
           +RSGY +A    L ++ +             IWK+ +  KIK FLWR     L T     
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 166 RKGIDVSNSCVFCNLCLENSLHVFWSCPFIKNWW 200
            + ID    C  C +  E   H+ ++CP+ ++ W
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVW 99

BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-05
Identity = 25/66 (37.88%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 137 IWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSLHVFWSCPFIK 196
           IWK++   KIK FLW+L    L T DN  R+ I     C  C    E S H+F+ C + +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 197 NWWLCS 203
             W  S
Sbjct: 78  QVWRAS 83

BLAST of Lcy06g012020 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.3e-05
Identity = 20/62 (32.26%), Postives = 32/62 (51.61%), Query Frame = 0

Query: 134 WVG-IWKMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSLHVFWSC 193
           W+G IW +++  KIK  +W+  +N LP     L + I +   C  C    E   H+ ++C
Sbjct: 5   WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCR-DFETITHILFNC 64

Query: 194 PF 195
           PF
Sbjct: 65  PF 65

BLAST of Lcy06g012020 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04
Identity = 22/69 (31.88%), Postives = 33/69 (47.83%), Query Frame = 0

Query: 133 WWVGIW-KMRLPSKIKFFLWRLSHNHLPTRDNHLRKGIDVSNSCVFCNLCLENSLHVFWS 192
           W+  IW K ++P K  F  W    + L T+D  +  G      C+FCN   E   H+F+ 
Sbjct: 43  WFKAIWFKGKIP-KHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFD 102

Query: 193 CPFIKNWWL 201
           C F +  W+
Sbjct: 103 CEFAREVWI 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F61.1e-1325.59Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6J1DAR45.5e-4844.92uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A803Q1K63.9e-3838.31Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9FT785.7e-3741.10RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 ... [more]
A0A803QQT29.7e-3737.20Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2H5Q8Y32.8e-3636.84Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_207130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022150918.11.1e-4744.92uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_024950112.18.1e-3838.26uncharacterized protein LOC112496847 [Citrus sinensis][more]
XP_024035599.11.5e-3634.19uncharacterized protein LOC112096407 [Citrus clementina][more]
XP_024956542.12.0e-3636.75uncharacterized protein LOC112498908 [Citrus sinensis][more]
XP_030502765.12.6e-3634.62uncharacterized protein LOC115717936 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT3G09510.12.2e-1727.94Ribonuclease H-like superfamily protein [more]
AT2G02650.13.0e-0628.72Ribonuclease H-like superfamily protein [more]
AT3G25270.12.5e-0537.88Ribonuclease H-like superfamily protein [more]
AT3G26855.14.3e-0532.26RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT2G02520.14.8e-0431.88RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 104..199
e-value: 2.8E-19
score: 69.6
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 14..199
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 14..199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g012020.1Lcy06g012020.1mRNA