Lcy05g017280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g017280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 27652486 .. 27652692 (+)
RNA-Seq ExpressionLcy05g017280
SyntenyLcy05g017280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTCGTTCTCCTCCTCTTGGAACTCGTCCATCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCCCCGCCCCCTCCGTCGCCGTCTGCTTGTGCCGCCGTGAAGTCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGTGTGGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGA

mRNA sequence

ATGGCATCTCTCGTTCTCCTCCTCTTGGAACTCGTCCATCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCCCCGCCCCCTCCGTCGCCGTCTGCTTGTGCCGCCGTGAAGTCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGTGTGGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGA

Coding sequence (CDS)

ATGGCATCTCTCGTTCTCCTCCTCTTGGAACTCGTCCATCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCCCCGCCCCCTCCGTCGCCGTCTGCTTGTGCCGCCGTGAAGTCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGTGTGGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGA

Protein sequence

MASLVLLLLELVHHHNTNPDYWLTLPLPPPPPSPSACAAVKSPPSECHKSRICVDETEMDEFLKDSRV
Homology
BLAST of Lcy05g017280 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MASLVLLLLELVHHHNTNPDYWLTLPLPP---PPPSPSACAAVKS--PPSEC-----HKS 60
          MASL+LLL +L+ HH+TNPDY LTLP PP   P  S S+ A   S  P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICVDETEMDEFLKDSRV 69
          RIC DE  MDEFLK+SRV
Sbjct: 61 RICADENVMDEFLKESRV 78

BLAST of Lcy05g017280 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MASLVLLLLELVHHHNTNPDYWLTLPLPPP--PPSPSACAAVKS--PPSECH--KSRICV 60
          MASLVLLL EL+ HHNTNPDYWLT+PLPPP  PP  S+  A KS  P   C+  KSRIC 
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

Query: 61 DETEMDEFLKDSR 68
          DET +DEFLK+SR
Sbjct: 61 DETVIDEFLKESR 73

BLAST of Lcy05g017280 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MASLVLLLLELVHHHNTNPDYWLTLPLPP---PPPSPSACAAVKS--PPSEC-----HKS 60
          MASL+LLL +L+ HH+TNPDY LTLP PP   P  S S+ A   S  P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICVDETEMDEFLKDSRV 69
          RIC DE  MDEFLK+SR+
Sbjct: 61 RICADENVMDEFLKESRI 78

BLAST of Lcy05g017280 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 1  MASLVLLLLELVHHHNTNPDYWLTLPLP-PPPPSPSACAAV-KSPPSECHKS 51
          MASLVLLL ELV HHNTNPDYWLTLPLP P PP PS+ +AV KS  S+C  +
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAKSLSSKCQNN 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHI44.1e-0956.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038904495.13.9e-1467.12uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida][more]
KAE8651190.11.1e-0855.13hypothetical protein Csa_001669 [Cucumis sativus][more]
KAG6580906.12.7e-0771.15hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g017280.1Lcy05g017280.1mRNA