Lcy05g013510 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g013510
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein RADIALIS-like 1
Location	Chr05: 16177372 .. 16179139 (+)
RNA-Seq Expression	Lcy05g013510
Synteny	Lcy05g013510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAACCCCCTTTCATTTTTTTCTCCCTATTCTCACTTCTTCAAAGCAATTGAAGCTTCCCTTTAGCTGCTTTTGTTTTTTGCCCTAATTTATTTCCCTTTGTAAACTTTGCATTTTCATCAATGGCTTCAATGTCCTCCCATGGATCTGGCACATGGACTACAAAGGAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACGCCTGACCGATGGCTGAATGTTGCAAAAGCTGTTGGTGGAAAGACTGCTGAGGAGGTCAAAAGGCATTATGAGCTTCTTGTGGAGGATGTTAAGTTTATTGAGTCTGGCCGAGTTCCCTTCCCTTATCATAACTCTGGAGGTGCCAACTAAGGTAACTAATTAATATAACCCATCACAAAAACGTCTATACGAAAAGAATTAGACGTACGGTAATATCGTTAAGGAAAAAACTTGCCGGTACACTGTTCGATAGGAACTCCTACTAACTTTCTGACCTGGGTGCACTTTTAGTGACTCAAAAATTTTAGTGGAGTCCATTTATCTATTCGATGCAATAGATATACATCAATGGAAATACACCATAAAAAAAATGAGTAGATCGAGCATCCTCCTGGTGTGTGTAGGGAAGTAGAGACTTCAGAAATCACCGCTCACTGAGCTATTTATTGTCGCCAATAGCATTTCGCTTGCATGCTAGCGCCACGCTTGGTAGAGCTATCGTGCGCAAGTGAAAGATATGCATTTTTTGTACTAGTAGTACTGGACAAGCTCAGAGGGAATAATATCTTTCTTTCCCATGATGGCTAGGTTCTATAGTTAATTCATTCTTCTGCTTCTTATAGCTCATACATCTAAGTTTCATTTACGAAAAATAAAAGTACATTAAATTAAATCATTATAGTTATCGTGGTCTATAAGTTTGATCTTTTTCACGTTTAATAGTAATGTAACGCGGTATCAGAAGTAGGAGGTGACACGTTGGTCCAAAATAATAGAATTGCTTAGAAGGCCATATTTCTCTCCTATTTGGTCATGTTCTTAACTGATTTAGTTGAGTTCAAATGGGGTACCCTAGTTATTTTCAATGAAGAGATCAAACCCTAGCCCTAACCATTGGCTTTTTTTAATGATCTGATCTAGCTAGCTTGCAAACTGATGTCATATTGTAAAGTTTGTATGTATATGAGCAGAGGAAATGTCATTATCAACGAATAGCAGCCCCCCATTTGGCATGGATTCTTCTCTGAACTAATGGCTACATGTTTCAATAAAAAAAACAATGCAACTCGTCGTCTTGTAATTAAGCTTTTTGAAAGGCACCCTTTTCTTCTTGTTCTTTGAAACTAAAGCTGCACCACTGCCTCAGCATTGGCCCTTCAGACCCCAACAAAAACAACATTTATTTGTATATATATATATATATATTTAGGAATAGTATTATATCATATATATCAACATTATATTATTTTTCATATTGGATTTTAACATTTATTTGTTTGTTTTTTTTTTTCAGGATGAGGAACATGAAGCTCCATTGAGCTTGATGGTGAAGTAATGGAAGAATAAAAGAAGAAAAGAAGGAAGAACCATTTGCAATGCTATCTAATTATATCGATTTGTGTTAAGCTTTAAGTTATTTGTTAATTCCCTGCATTATTATTGTACATCAGCCTTCGATTTTGGGAGGAAAAGATCAAAAGATTCATTCCTTCCTTTCGTGAGGTTTAATGAATGTTTATGTCTTTTTATAATGGAAAATCTAATCCTGGCA

mRNA sequence

TTCAAACCCCCTTTCATTTTTTTCTCCCTATTCTCACTTCTTCAAAGCAATTGAAGCTTCCCTTTAGCTGCTTTTGTTTTTTGCCCTAATTTATTTCCCTTTGTAAACTTTGCATTTTCATCAATGGCTTCAATGTCCTCCCATGGATCTGGCACATGGACTACAAAGGAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACGCCTGACCGATGGCTGAATGTTGCAAAAGCTGTTGGTGGAAAGACTGCTGAGGAGGTCAAAAGGCATTATGAGCTTCTTGTGGAGGATGTTAAGTTTATTGAGTCTGGCCGAGTTCCCTTCCCTTATCATAACTCTGGAGGTGCCAACTAAGGATGAGGAACATGAAGCTCCATTGAGCTTGATGGTGAAGTAATGGAAGAATAAAAGAAGAAAAGAAGGAAGAACCATTTGCAATGCTATCTAATTATATCGATTTGTGTTAAGCTTTAAGTTATTTGTTAATTCCCTGCATTATTATTGTACATCAGCCTTCGATTTTGGGAGGAAAAGATCAAAAGATTCATTCCTTCCTTTCGTGAGGTTTAATGAATGTTTATGTCTTTTTATAATGGAAAATCTAATCCTGGCA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCCCATGGATCTGGCACATGGACTACAAAGGAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACGCCTGACCGATGGCTGAATGTTGCAAAAGCTGTTGGTGGAAAGACTGCTGAGGAGGTCAAAAGGCATTATGAGCTTCTTGTGGAGGATGTTAAGTTTATTGAGTCTGGCCGAGTTCCCTTCCCTTATCATAACTCTGGAGGTGCCAACTAA

Protein sequence

MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPFPYHNSGGAN

Homology

[Close]

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-27
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2  ASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDV 61
          +SMSS  SG+WT K+NKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPFP-YHNSGG 79
            IE+G VPFP Y  SGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-26
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 3  SMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVK 62
          SMSS+GSG+WT K+NKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPFPYHNSGGAN 81
           IE+G VPFP + +   N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 5  SSHGSG-TWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKF 64
          S+ GSG  W+ KENKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HYE+LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGRVPFPYHNSGGAN 81
          IESG+VPFP + + G N
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-25
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S   S +WT KENK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHYELL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          V  IESGR P P + S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  +NK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          +  IE+GRVP P + +  +N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.6e-34
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  +NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SGG N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT K+NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT K+NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGS  WT K+NKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+V FPY  SGG +
Sbjct: 61 VKFIESGQVSFPYRTSGGGS 80

[Close]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL
Match: A0A6J1F548 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGS +WT K+NKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY+LLVED
Sbjct: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESGRVP+PY NSG +N
Sbjct: 61 VKFIESGRVPYPYRNSGASN 80

[Close]

BLAST of Lcy05g013510 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.0e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  +NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SGG N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of Lcy05g013510 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.0e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  +NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SGG N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of Lcy05g013510 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT K+NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of Lcy05g013510 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT K+NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY  SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of Lcy05g013510 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 3.7e-32
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSG+WT K+NKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HY LLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          VKFIESG+VPFPY +S G N
Sbjct: 61 VKFIESGQVPFPYRSSRGGN 80

[Close]

BLAST of Lcy05g013510 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-28
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2  ASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDV 61
          +SMSS  SG+WT K+NKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPFP-YHNSGG 79
            IE+G VPFP Y  SGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Lcy05g013510 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-27
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 3  SMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVK 62
          SMSS+GSG+WT K+NKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPFPYHNSGGAN 81
           IE+G VPFP + +   N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Lcy05g013510 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  +NK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          +  IE+GRVP P + +  +N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Lcy05g013510 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  +NK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPFPYHNSGGAN 81
          +  IE+GRVP P + +  +N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Lcy05g013510 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-23
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTTKENKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S   S +WT+K+NK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGRVPFPYHNS 77
          +  IE   VP P + +
Sbjct: 61 LMNIEQDLVPLPKYKT 76

The following BLAST results are available for this feature:

BLAST of Lcy05g013510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	4.9e-27	73.08	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	5.4e-26	69.23	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	1.6e-25	68.83	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	2.7e-25	68.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	1.6e-22	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Lcy05g013510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348	9.6e-34	90.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A5A7SYK4	1.3e-33	90.00	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	1.3e-33	90.00	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A6J1C385	6.9e-32	86.25	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1F548	3.4e-31	82.50	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1	[more]

BLAST of Lcy05g013510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151125.2	2.0e-33	90.00	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAE8645641.1	2.0e-33	90.00	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
KAA0036150.1	2.6e-33	90.00	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	2.6e-33	90.00	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_038888369.1	3.7e-32	87.50	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of Lcy05g013510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.5e-28	73.08	RAD-like 1	[more]
AT2G21650.1	3.9e-27	69.23	Homeodomain-like superfamily protein	[more]
AT1G75250.1	1.2e-23	63.75	RAD-like 6	[more]
AT1G75250.2	1.2e-23	63.75	RAD-like 6	[more]
AT1G19510.1	2.6e-23	64.47	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 6.3E-9 score: 45.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.666925
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 4.45249E-8 score: 42.9478
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 1.3E-24 score: 87.7
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 e-value: 1.4E-6 score: 28.4
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 10.140519
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g013510.1	Lcy05g013510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity