Lcy03g000120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA helicase
Location	Chr03: 375374 .. 381719 (-)
RNA-Seq Expression	Lcy03g000120
Synteny	Lcy03g000120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAATGTCGTGAAGGCAAAACCATACAGTCCATACGTTCTATCCTTATCGCCGAACCCATCCTCCTCTACTCTACTCTCCTCGAGTTCTTGTGCTTTCTCAGTCCCTCATTTTTCTTCCACTGGGACTTTGAGCGAGTGCAAGGTGGCGAAGAAAAGCCTCGCAAATTAGGCAGCCACCAGCCACGACAGTGTCACTGAAGAGCAGAAATGGCTTCCATTCTCGGCGTTACTGCAATTCATCATGCACCAAATCTTGATATGTACAGAAGGCTGGGGACAACGCTCACAGCATCCCCGACGCCTTCTCTTTCCTTTGCCGACAAGTCCCACTTAAATGCCCTCAAAGCTCAAACTAGTTTCACTACTAGTACCCGTCGCAATTTGTCCGGATTCACCTCTTCTGCAATTGCTACTCCCAATTCCATCCTCAGCGAAGAGGCTTTTAGAAGTCTTGATGGCTTCTCCAAAGACTCCTTGGATGATAATCTCATCGATTCGGAACCTAATTCATCTCTTGCATTCTCTGATGACTCTCCTGCTGACGATGATGAGCTCGCCATTTCCAAACTAGGCTTGCCCCAACGACTCACTGATTCTCTTGAGAAGCGTGGGATTACCCACCTCTTCCCCATTCAAGTACCAATCACACTCTGTTGCTTTGCTTTGCTTTACTTTCTTTCCCTATTCCTTATTCCTCTGTCATTTACAGTTAATGTGGTAATTGGATTTTTTTGATTACTTGGTAACTGCTAGTTGCGAAAAAGGTGGGACGCGAAGTTCCAGTACTTTGATTGAGACAGCGCTGAAGAACTACTTTAATTTAAAGCCATCATTTATCCGTTTTCTTCCAGAAATTCTGTTCAGTTTGTTGAAGCTATTAGTTTGAAGTTAATTATTATATGTTTGCATAAGTTAAGTTTCAAAATGTTCCAGGATGTGGGAAGTGCTAACATGTAAAATCCAATGTGCAGAAATTTTGAGCTGGCTGCTACCCCTGCTAGTTTAGGAAATTGACCATAACTAAATTGTAGTCTTCTTTTATGATATAGATTCATTCTATTCTTAAGTTAGTCTTCCAGGTTATTTTAATCACACAAGCTGAAGTTATTTCTTTTGTCGTAAAACTTACCTCAAATATGTTTTTGTTACAACTTACAAGATATATTTGTTCTTGACTACTTTCATTAGTCAAGTTGTGTGATTGTATCTCTAATCTTCTATTTTGTTTTTACTTTTTCATGAAAAATATATAGAGAGCTGTTCTTGTCCCTGCACTAGAAGGTCGAGACCTCATTGCCCGTGCAAAGACTGGTACTGGGAAGACATTAGCCTTTGGGATACCAATTATTAAAAAACTCACTGAAGATGATGAATTAAGAAGTTCGCGGAGGTACAATTTTGTAACTCCCTAGAATTTGGTACCTAGAGATTTGTCTCAGAATTACTTACTCTTCTGTATTTGTTGACAGGCGGTCACGTCTTCCTAGAGTTTTGGTGTTAACTCCCACCAGGGAACTAGCCAAGCAAGTGGAAAAAGAGATAAAGGAATCTGCACCTTATCTGAACACTGTTTGCGTTTATGGAGGGGTTTCATATGTTACACAGCAAAATGCTCTTTCTCGTGGAGTTGATGTAGTAGTTGGAACACCTGGTCGAATAATAGACCTAATAAATGGTAACAGCCTGAATTTGGGGGAAGTTGAATATTTAGTATTAGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTTCCATCTCAGCGACAAAACATGCTTTTTTCTGCTACTATGCCAACGTGGGTTAAGAAACTTGCACGCAAATATTTGGAAAATCCATTAACCATTGATTTGGTAATCTTTTAACTTTTTTTATTATATCTTAATTAATTACTTAGGTTTCACATTTTTGACATCTGCAAATTTTATAGGCTGGTTTATTGTAATAAACCATGAGATATTCTTGTGGAAAGATGCTTGCCTTTTGGATCACGGTGTACCGGAAGAGACGAGCTAGTTTCTTTTTATATGTTCTCTTTTCATTCTTATTTTTTTACTTTAAGTGATAAGTGATGTATGGGCCTGCAGTTAGTGAAAGAAGCTAATTTGGTTTGCATCTCCTACGTGACAATGTTGTCATGAAAAGCTAGTGTTTGTTAAAAGAAAAAAAGCCAATTCTAATCTGAATGCCTATTGCAAGTTTTAAGGAAGACGACTCACTTTGGAGATAGATATCACATTTAATTGTCCATATAAAGATCAATAGCTGTTATGTACAAATAATCATCCCGTGTCAAATTTGTAGGTTGGCGACCAAGATGAAAAGCTTGCTGAAGGGATTAAACTTTATGCCATATTGACTACTGCAACTTCAAAGCAAACCATTCTCAGAGATCTTGTAACAGTAAGCACCGAAGCATATCCTCCCTTCTTCATACATCAGAGACCAGTTGTTTTGGGACTTAATTCTTTTGCATGCCGTAACTGCCACTCTGTTATTTGATGTCATTCTTAAGTGGTTGATGGTTTGAATATGTTAGATTACCCACTATCTTTTATCCAAAAAATTTTCTTCATCAAGGAAAAATGGAAGATTAATGTCTTTTATCTATAAATTCTCAATATTCACCTCCAACATGAATTTTAGCATAAATTCAGTTAATGCCCTTCTCTTAGGTTTGTTTTTATACAAAACACTTATGCTTGATCATGTGTATATAAACCATGTGTGTGTACATAGATACACGCATATATATTTCTTCTATTTACAAAATTCTCTCAATTTTCTTGTCTCGGTAAAATCACATGTTTAATATTACTGTTACATTTTTTCCTGTTATGGTAAAAACCAAATTTCTTGTGTGACCCCGATAATGTCATGATTTCAGGTGTATGCTAAGGGGGGCAAGACCATTGTTTTTACACAGACAAAACGCGATGCTGATGAAGTCTCTTTGGCATTAGCTAATAGCATAACATCAGAAGCATTGCATGGAGATATATCACAGCATCAACGGGAAAGAACCTTAAATGGCTTCCGACAAGGGAAGTTCACTGTGCTGGTTGCAACTGATGTAGCTTCACGAGGATTAGATATCCCAAATGTTGATTTGGTAATTTCATTGGGCTCTATTCTGATCTAAGAAGCATGGATACGAACATGACACGACATGGACGTGGTGACACGTTATTTTTTGAAAATCTAGGACACGGACGCTTTTACTAAACTATACATTTAAAAAAATATATATCGTTTTTATACAAGAAGGGAATTCAAAATCAATAAGTTTAAGCATTTGTATGCTTAAAATAACAAGTTTGATGCATTTCACTCTTGAAATTTATTATTTTTGTCATTTAGTATTATGTCTTTTTAGTATACTTAACAAGTGTTTCAATATGGACCTATATTGACTTTGTACAACTAGTATTTGTCACATATCAATCATGCTAACAAGTGTCCGATACGTGTCTAACGAGTGTCTGAGTGTCGAACACGGACACACTAGCCAAACTAAAGTGTTCATGCTTCTTAGATTTTGATCTATGTCAATTCTTTTTGCTCTTGTTCAATGTGAAATTTATTTGCTTAACCACCACCACCCGAAAAAGAACATGGAAAAGCAATAATTTTCCTTTTGGGGCAGTAAACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTTCTTTCATTGTATCTAATTGTCTCCCTCCTCCCCTTCAGAAGATGTGGGGGGGGGGGGGTGGAAGCATTAAACTCGTCCGGGCTTGTAATTGAAAATTGTTTTTTAAATTATCCTGTCTTTTGTATGACCAAAAGCTTGGATAAGTTTTGTTTCTACTCATTTTCACTAGCTTGTAAAATTAAACCTTTTGTGATGCTAAAATGCTCATTGTTTTTTTTTTTTTTTTTTTGAAATGCGATTTGACTTTCTCCTTACCTTCACTTCAGGTTATCCACTATGAACTTCCTAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGCACTGCCATTTTAATGTTTACAAATAGTCAAAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGGTGCAAATTTGAGTTTGCAAATCCACCTGGCATTGAGGAGGTTTTAGAATCATCAGCTGAGCAAGTGGTTGTTACTCTTCGTGGAGTTCATCCTGAATCTATTGAGTTTTTCACTCCAACTGCTCAGAAGTTAATTGATGAACAAGGAGCGGGTGCTCTGGCAGCTGCACTTGCACAATTAAGTGGGTTCTCCCATCCTCCTTCATCACGGTCACTTATTAACCATGAACAGGTAATTAAAAGTTCTGTTTTGCTAATTTGATATTATTGGAAAAGTCATCTTCCAGATGGCCATGTCATTGAAGGTAAACATTTTTATTGCAGGGATGGGTCACATTGCAACTGACCAGGGATCCATCTTATTCTCGAGGGTTTTTGTCTGCTAGGTCTGTCACTGGATTTCTGTCTGACATTTATTCCCCAGCTGCGGATGAAGTTGGAAAAATACATCTAATTGCAGATGAAAGGGTGAATATCTGTAGCAAGTTGAACATAATTCATGTCGTTTATTTTAAAATTTTGTTGGCATACAATTTTGTTTAAACAGACAATAAAATATTGATCTTGGTAATGCCAGATAAATGGAGCAGTATTCGATCTTCCAGAAGAAATAGCGAAAGAGTTGCTGAATAAGGAGTTGCCAGAAGGAAATACTATTTTGAAGGTCACCAAGGTAAGTTTTCCTCCCTTTCTTTTATAATCAGAGTTGTTGCTTAGTTACTCTTCTTGCATTGCTTCAAAAATAGTTTTCTTGTCTCTTTGATGTATGACTTTGACCATTATAAATATTGGGCTGTCTAACAGAATATTGGAACACGTTCCATACTTTATTTTTGCAGTTACCTCCTCTGCAAGACGATGGCCCACCAAGTGACAACTATGGAAGATTTTCTGGCAGAGAAAGAAATAGCCGAAACAACTCTAGGGATCGTAGAGGTTTTAGAACATCAAGAGGCTGGGGCGGTAGCCGAGACTCTGATGATGATGGTGATTTATTTAGTAGAAATCGCAGTTTTAGACCTAACAGCAGCAGGGGTCGGAATTTTAAAAGCTCAGGAGATGATTGGCTAATTGGAGGCAGACGATCAAGCAGGTCATCATCCATGGATAGGTAATATTTTGCTTAATATGATAGTGGATATTGTGTATTTCCTTGCAATTCTCTTTTGGAAATAAAATGATGGGTAAGCAAGACAGTGAAGGGTTAATCTTTAAAAATTTTGTACTTCCACAAGGAAAGATAATCGTTTGGGATGGGTGAGTCGAATATGCAGTTGATTTCGTTTTCGTTTATTTTTTTTCCCCTTCATTGTGGGTATTTAGCTTTGCGGTTTTTTCTTCTCTCCTAGGGCAGGGGAGGTGTTTCTGGGAATGGACTGTTAATATGAAATAGCTTAAATTTTGGAAATATATTCGTATTCTTATGGTGTTGAAACTTGCCCCAAATGTGGTTTGCAATTCTTTGGCGTTCATTGATAATAAGCATCAGCCCTATCCGTAGAAATAAGAAATTTTGTTTTCTAGTTTGGAAGTGCTCTGTGCTTGTATATAATCTTTTCCTTCCACTTTTTCGTACATTGCCACTACCAACTAATTTATCTGGGAGAGTACAGCCTGATTTGCTCATTAGTAATTCATCTGGGAAGCTACTTGTTTGTTTGTTCGTTTTTTTTTTAATTAATTAATTAATTGATTAATTTTTTATTTTTAGAACTTAAAATTTTATCTTATTTTTAATTTGTCATCAATATGCGCAATTCTAGATAACAGTGATGTAATTTGAATACGTATTGCAGATTTGGAGGCTCCTGTTTTAATTGCGGACGGATGGGGCACAGGGCATCAGAATGCCCTGACAAGTGAAAAGCAAGAATACTAAACATACTCGATTCAGCTTTAGTTTTTGTGGCGACTTATAAGTAGGTTTTTGGTGTCAGCTAAGTTGCATTACCTTATATCCAGTGGCTGGCACTTACGTCTCGAAGATGCTCCTTGAAAGAGTTACAGGAATGGTGCTTGGTCTCATTCTTGCTGCGTTACAAGATTACTTGTAGGATATTTGCAACATTCTCAATCTGTTCTAATTTAAGTTTTGCGCAGTGAAGCATTCAAAATTGATTTGTCGTGTATGGATTCTATGGATACCCTTTTTCACCCCCATGTAGAATGTATATGATTCAGAGAGAGAATGAAGAAATGAAAACAGC

mRNA sequence

GGTAATGTCGTGAAGGCAAAACCATACAGTCCATACGTTCTATCCTTATCGCCGAACCCATCCTCCTCTACTCTACTCTCCTCGAGTTCTTGTGCTTTCTCAGTCCCTCATTTTTCTTCCACTGGGACTTTGAGCGAGTGCAAGGTGGCGAAGAAAAGCCTCGCAAATTAGGCAGCCACCAGCCACGACAGTGTCACTGAAGAGCAGAAATGGCTTCCATTCTCGGCGTTACTGCAATTCATCATGCACCAAATCTTGATATGTACAGAAGGCTGGGGACAACGCTCACAGCATCCCCGACGCCTTCTCTTTCCTTTGCCGACAAGTCCCACTTAAATGCCCTCAAAGCTCAAACTAGTTTCACTACTAGTACCCGTCGCAATTTGTCCGGATTCACCTCTTCTGCAATTGCTACTCCCAATTCCATCCTCAGCGAAGAGGCTTTTAGAAGTCTTGATGGCTTCTCCAAAGACTCCTTGGATGATAATCTCATCGATTCGGAACCTAATTCATCTCTTGCATTCTCTGATGACTCTCCTGCTGACGATGATGAGCTCGCCATTTCCAAACTAGGCTTGCCCCAACGACTCACTGATTCTCTTGAGAAGCGTGGGATTACCCACCTCTTCCCCATTCAAAGAGCTGTTCTTGTCCCTGCACTAGAAGGTCGAGACCTCATTGCCCGTGCAAAGACTGGTACTGGGAAGACATTAGCCTTTGGGATACCAATTATTAAAAAACTCACTGAAGATGATGAATTAAGAAGTTCGCGGAGGCGGTCACGTCTTCCTAGAGTTTTGGTGTTAACTCCCACCAGGGAACTAGCCAAGCAAGTGGAAAAAGAGATAAAGGAATCTGCACCTTATCTGAACACTGTTTGCGTTTATGGAGGGGTTTCATATGTTACACAGCAAAATGCTCTTTCTCGTGGAGTTGATGTAGTAGTTGGAACACCTGGTCGAATAATAGACCTAATAAATGGTAACAGCCTGAATTTGGGGGAAGTTGAATATTTAGTATTAGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTTCCATCTCAGCGACAAAACATGCTTTTTTCTGCTACTATGCCAACGTGGGTTAAGAAACTTGCACGCAAATATTTGGAAAATCCATTAACCATTGATTTGGTTGGCGACCAAGATGAAAAGCTTGCTGAAGGGATTAAACTTTATGCCATATTGACTACTGCAACTTCAAAGCAAACCATTCTCAGAGATCTTGTAACAGTGTATGCTAAGGGGGGCAAGACCATTGTTTTTACACAGACAAAACGCGATGCTGATGAAGTCTCTTTGGCATTAGCTAATAGCATAACATCAGAAGCATTGCATGGAGATATATCACAGCATCAACGGGAAAGAACCTTAAATGGCTTCCGACAAGGGAAGTTCACTGTGCTGGTTGCAACTGATGTAGCTTCACGAGGATTAGATATCCCAAATGTTGATTTGGTTATCCACTATGAACTTCCTAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGCACTGCCATTTTAATGTTTACAAATAGTCAAAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGGTGCAAATTTGAGTTTGCAAATCCACCTGGCATTGAGGAGGTTTTAGAATCATCAGCTGAGCAAGTGGTTGTTACTCTTCGTGGAGTTCATCCTGAATCTATTGAGTTTTTCACTCCAACTGCTCAGAAGTTAATTGATGAACAAGGAGCGGGTGCTCTGGCAGCTGCACTTGCACAATTAAGTGGGTTCTCCCATCCTCCTTCATCACGGTCACTTATTAACCATGAACAGGGATGGGTCACATTGCAACTGACCAGGGATCCATCTTATTCTCGAGGGTTTTTGTCTGCTAGGTCTGTCACTGGATTTCTGTCTGACATTTATTCCCCAGCTGCGGATGAAGTTGGAAAAATACATCTAATTGCAGATGAAAGGATAAATGGAGCAGTATTCGATCTTCCAGAAGAAATAGCGAAAGAGTTGCTGAATAAGGAGTTGCCAGAAGGAAATACTATTTTGAAGGTCACCAAGTTACCTCCTCTGCAAGACGATGGCCCACCAAGTGACAACTATGGAAGATTTTCTGGCAGAGAAAGAAATAGCCGAAACAACTCTAGGGATCGTAGAGGTTTTAGAACATCAAGAGGCTGGGGCGGTAGCCGAGACTCTGATGATGATGGTGATTTATTTAGTAGAAATCGCAGTTTTAGACCTAACAGCAGCAGGGGTCGGAATTTTAAAAGCTCAGGAGATGATTGGCTAATTGGAGGCAGACGATCAAGCAGGTCATCATCCATGGATAGATTTGGAGGCTCCTGTTTTAATTGCGGACGGATGGGGCACAGGGCATCAGAATGCCCTGACAAGTGAAAAGCAAGAATACTAAACATACTCGATTCAGCTTTAGTTTTTGTGGCGACTTATAAGTAGGTTTTTGGTGTCAGCTAAGTTGCATTACCTTATATCCAGTGGCTGGCACTTACGTCTCGAAGATGCTCCTTGAAAGAGTTACAGGAATGGTGCTTGGTCTCATTCTTGCTGCGTTACAAGATTACTTGTAGGATATTTGCAACATTCTCAATCTGTTCTAATTTAAGTTTTGCGCAGTGAAGCATTCAAAATTGATTTGTCGTGTATGGATTCTATGGATACCCTTTTTCACCCCCATGTAGAATGTATATGATTCAGAGAGAGAATGAAGAAATGAAAACAGC

Coding sequence (CDS)

ATGGCTTCCATTCTCGGCGTTACTGCAATTCATCATGCACCAAATCTTGATATGTACAGAAGGCTGGGGACAACGCTCACAGCATCCCCGACGCCTTCTCTTTCCTTTGCCGACAAGTCCCACTTAAATGCCCTCAAAGCTCAAACTAGTTTCACTACTAGTACCCGTCGCAATTTGTCCGGATTCACCTCTTCTGCAATTGCTACTCCCAATTCCATCCTCAGCGAAGAGGCTTTTAGAAGTCTTGATGGCTTCTCCAAAGACTCCTTGGATGATAATCTCATCGATTCGGAACCTAATTCATCTCTTGCATTCTCTGATGACTCTCCTGCTGACGATGATGAGCTCGCCATTTCCAAACTAGGCTTGCCCCAACGACTCACTGATTCTCTTGAGAAGCGTGGGATTACCCACCTCTTCCCCATTCAAAGAGCTGTTCTTGTCCCTGCACTAGAAGGTCGAGACCTCATTGCCCGTGCAAAGACTGGTACTGGGAAGACATTAGCCTTTGGGATACCAATTATTAAAAAACTCACTGAAGATGATGAATTAAGAAGTTCGCGGAGGCGGTCACGTCTTCCTAGAGTTTTGGTGTTAACTCCCACCAGGGAACTAGCCAAGCAAGTGGAAAAAGAGATAAAGGAATCTGCACCTTATCTGAACACTGTTTGCGTTTATGGAGGGGTTTCATATGTTACACAGCAAAATGCTCTTTCTCGTGGAGTTGATGTAGTAGTTGGAACACCTGGTCGAATAATAGACCTAATAAATGGTAACAGCCTGAATTTGGGGGAAGTTGAATATTTAGTATTAGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTTCCATCTCAGCGACAAAACATGCTTTTTTCTGCTACTATGCCAACGTGGGTTAAGAAACTTGCACGCAAATATTTGGAAAATCCATTAACCATTGATTTGGTTGGCGACCAAGATGAAAAGCTTGCTGAAGGGATTAAACTTTATGCCATATTGACTACTGCAACTTCAAAGCAAACCATTCTCAGAGATCTTGTAACAGTGTATGCTAAGGGGGGCAAGACCATTGTTTTTACACAGACAAAACGCGATGCTGATGAAGTCTCTTTGGCATTAGCTAATAGCATAACATCAGAAGCATTGCATGGAGATATATCACAGCATCAACGGGAAAGAACCTTAAATGGCTTCCGACAAGGGAAGTTCACTGTGCTGGTTGCAACTGATGTAGCTTCACGAGGATTAGATATCCCAAATGTTGATTTGGTTATCCACTATGAACTTCCTAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGCACTGCCATTTTAATGTTTACAAATAGTCAAAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGGTGCAAATTTGAGTTTGCAAATCCACCTGGCATTGAGGAGGTTTTAGAATCATCAGCTGAGCAAGTGGTTGTTACTCTTCGTGGAGTTCATCCTGAATCTATTGAGTTTTTCACTCCAACTGCTCAGAAGTTAATTGATGAACAAGGAGCGGGTGCTCTGGCAGCTGCACTTGCACAATTAAGTGGGTTCTCCCATCCTCCTTCATCACGGTCACTTATTAACCATGAACAGGGATGGGTCACATTGCAACTGACCAGGGATCCATCTTATTCTCGAGGGTTTTTGTCTGCTAGGTCTGTCACTGGATTTCTGTCTGACATTTATTCCCCAGCTGCGGATGAAGTTGGAAAAATACATCTAATTGCAGATGAAAGGATAAATGGAGCAGTATTCGATCTTCCAGAAGAAATAGCGAAAGAGTTGCTGAATAAGGAGTTGCCAGAAGGAAATACTATTTTGAAGGTCACCAAGTTACCTCCTCTGCAAGACGATGGCCCACCAAGTGACAACTATGGAAGATTTTCTGGCAGAGAAAGAAATAGCCGAAACAACTCTAGGGATCGTAGAGGTTTTAGAACATCAAGAGGCTGGGGCGGTAGCCGAGACTCTGATGATGATGGTGATTTATTTAGTAGAAATCGCAGTTTTAGACCTAACAGCAGCAGGGGTCGGAATTTTAAAAGCTCAGGAGATGATTGGCTAATTGGAGGCAGACGATCAAGCAGGTCATCATCCATGGATAGATTTGGAGGCTCCTGTTTTAATTGCGGACGGATGGGGCACAGGGCATCAGAATGCCCTGACAAGTGA

Protein sequence

MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLSGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGGRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK

Homology

[Close]

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot
Match: Q8L7S8 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2)

HSP 1 Score: 975.3 bits (2520), Expect = 3.9e-283
Identity = 547/770 (71.04%), Postives = 616/770 (80.00%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRR--N 60
           MAS +GV +++  P+L++ +    +   S   SLS  DK     L    S    TRR  +
Sbjct: 1   MASTVGVPSLYQVPHLEISK--PNSKKRSNCLSLSL-DKPFFTPL----SLVRRTRRIHS 60

Query: 61  LSGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAI 120
            S    SA+ATPNS+LSEEAF+SL     D  D   +D + N+  A       D +ELAI
Sbjct: 61  SSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYD---LDGDNNNVEA------DDGEELAI 120

Query: 121 SKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKL 180
           SKL LPQRL +SLEKRGITHLFPIQRAVLVPAL+GRD+IARAKTGTGKTLAFGIPIIK+L
Sbjct: 121 SKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 180

Query: 181 TED-DELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNA 240
           TE+  +  + RR  RLP+ LVL PTRELAKQVEKEIKESAPYL+TVCVYGGVSY  QQ+A
Sbjct: 181 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSA 240

Query: 241 LSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQR 300
           L+RGVDVVVGTPGRIIDLI G SL LGEVEYLVLDEADQMLAVGFEE VE ILE LP++R
Sbjct: 241 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 300

Query: 301 QNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDL 360
           Q+MLFSATMPTWVKKLARKYL+NPL IDLVGDQDEKLAEGIKLYAI TT+TSK+TIL DL
Sbjct: 301 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 360

Query: 361 VTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVL 420
           +TVYAKGGKTIVFTQTKRDADEVSLAL+NSI +EALHGDISQHQRERTLN FRQGKFTVL
Sbjct: 361 ITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 420

Query: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRS 480
           VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILM T+SQ+RTVRS
Sbjct: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 480

Query: 481 LERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALA 540
           LERDVGC FEF +PP + ++LESSA+QVV TL GVHP+SI+FF+ TAQKL +E+G  ALA
Sbjct: 481 LERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALA 540

Query: 541 AALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADE 600
           AALA LSGFS PPSSRSL++HE+GWVTLQL RDP+ +RGFLSARSVTGFLSD+Y  AADE
Sbjct: 541 AALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADE 600

Query: 601 VGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRF 660
           VGKI LIAD+RI GAVFDLPEEIAKELL K++PEGN++  +TKLPPLQDDGP SDNYGRF
Sbjct: 601 VGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRF 660

Query: 661 SGRERNSR--NNSRDRRGFR--TSRG---WG-----GSRDSDDDGDLFSRNRSFRPNSSR 720
           S R+R  R    SR  RG R  +SRG   WG     GSR S   G  +SR  S    SSR
Sbjct: 661 SSRDRMPRGGGGSRGSRGGRGGSSRGRDSWGGDDDRGSRRSSGGGSSWSRGGS----SSR 720

Query: 721 GRNFKSSGDDWLIGGRRSSRSSSMDR---FGGSCFNCGRMGHRASECPDK 753
           G     S DDWLIGGR SS S +  R   FGGSCF CG+ GHRA++CPDK
Sbjct: 721 G-----SSDDWLIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPDK 745

[Close]

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot
Match: Q0DM51 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 942.6 bits (2435), Expect = 2.8e-273
Identity = 514/760 (67.63%), Postives = 588/760 (77.37%), Query Frame = 0


Query: 28  ASPTPSLSFADKSHLNALKAQTSFTTSTRRNLSG---FTSSAIATPNSILSEEAFRSLDG 87
           ++P+ S + A      +L+ + +F     R   G     + AIA+PNS+LSE AF+ L  
Sbjct: 13  SNPSASAAAAGAGAAPSLRLRAAFRCWALRRAGGGRWAAAGAIASPNSVLSEHAFKRLQL 72

Query: 88  FSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQR 147
             ++  ++          +        D+DELAI++LGLP++L  +LEKRGITHLFPIQR
Sbjct: 73  SDEEEEEEEGAYGSDEEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQR 132

Query: 148 AVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRE 207
           AVL+PAL+GRDLIARAKTGTGKTLAFGIP+IK+L E+D+ RS  RR R+PRVLVL PTRE
Sbjct: 133 AVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSV-RRGRIPRVLVLAPTRE 192

Query: 208 LAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLG 267
           LAKQVEKEIKESAP L+TVCVYGGVSY  QQNALSRGVDVVVGTPGRIIDLING SL LG
Sbjct: 193 LAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLG 252

Query: 268 EVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTI 327
           EV+YLVLDEADQMLAVGFEEDVE IL++LP++RQ+MLFSATMP WVKKL+R+YL NPLTI
Sbjct: 253 EVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTI 312

Query: 328 DLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLAL 387
           DLVGDQDEKLAEGIKLYAI  T+TSK+T+L DL+TVYAKGGKTIVFT+TKRDADEVSLAL
Sbjct: 313 DLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLAL 372

Query: 388 ANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDP 447
            NSI SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDP
Sbjct: 373 TNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 432

Query: 448 ETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQ 507
           ETFVHRSGRTGRAGK GTAILMFTNSQRRTVRSLERDVGC+F+F +PP IE+VLESSAE 
Sbjct: 433 ETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEH 492

Query: 508 VVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVT 567
           V+ TLRGVH ESI++F P A++L +E G  ALA+ALA LSGFS PPSSRSLI+HEQGWVT
Sbjct: 493 VIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVT 552

Query: 568 LQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGKIHLIADERINGAVFDLPEEIAKEL 627
           LQLTRDP Y RGF S RSVTGFLSD+ S AADEVGKI L ADE++ GAVFDLPEEIA++L
Sbjct: 553 LQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDL 612

Query: 628 LNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSR 687
           L+ ELP GNTI KVTKLP LQDDGP +D+YGRFS  +R  RN  R R G   SRG  G  
Sbjct: 613 LSMELPPGNTITKVTKLPALQDDGPATDSYGRFSNSDRGFRNR-RSRGG--GSRGGRGGW 672

Query: 688 DSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDW----LIGGRRSSRSSSMD---------- 747
           DSD + D F R          GR+F+S  D W      GGRRS+RSSS            
Sbjct: 673 DSDGE-DRFRRG---------GRSFRSDNDSWSDDDFGGGRRSNRSSSFGGRGSSYGSRS 732

Query: 748 ------------------RFGGSCFNCGRMGHRASECPDK 753
                              F G+CFNCG  GHRAS+CP+K
Sbjct: 733 SSSFGGRSSSFGSRDSSRSFSGACFNCGESGHRASDCPNK 758

[Close]

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot
Match: A0A1D6LAB7 (DEAD-box ATP-dependent RNA helicase 3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1)

HSP 1 Score: 924.9 bits (2389), Expect = 6.0e-268
Identity = 503/718 (70.06%), Postives = 566/718 (78.83%), Query Frame = 0


Query: 64  SSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISKLGL 123
           + A+A+PNS+LSE AF+ L   S D   +    S+ +      +    D++ELAI++LGL
Sbjct: 39  AGALASPNSVLSEHAFKRLQLGSDDEDGEGPYGSDADEGF---EAGEGDNEELAIARLGL 98

Query: 124 PQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTEDDE 183
           P  L  +LEKRGITHLFPIQRAVL+PALEGRDLIARAKTGTGKTLAFGIP+IK+L E D+
Sbjct: 99  PDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQDD 158

Query: 184 LRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVD 243
            R + RR R PRVLVL PTRELAKQVEKEIKESAP L TVCVYGGVSY  QQNALSRGVD
Sbjct: 159 GRIT-RRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVD 218

Query: 244 VVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFS 303
           VVVGTPGRIIDLING SL LGEV+YLVLDEADQMLAVGFEEDVE IL++LP+ RQ+MLFS
Sbjct: 219 VVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFS 278

Query: 304 ATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAK 363
           ATMP+WVKKL+R+YL NPLTIDLVGDQDEKLAEGIKLYAI  T TSK+T+L DL+TVYAK
Sbjct: 279 ATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAK 338

Query: 364 GGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 423
           GGKTIVFT+TK+DADEVSLAL NSI SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA
Sbjct: 339 GGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 398

Query: 424 SRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVG 483
           +RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQ+RTV+SLERDVG
Sbjct: 399 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVG 458

Query: 484 CKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAALAQL 543
           C FEF +PP IEEVLESSAE V+ TLRGVHPES ++F   A+KL +E G  ALA+ALA L
Sbjct: 459 CNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASALAHL 518

Query: 544 SGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGKIHL 603
           SGFS PPSSRSLI+HEQGWVTLQLTR+  + RGF S RSVTGFLSD+ S AADEVGKI+L
Sbjct: 519 SGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFSPRSVTGFLSDVCSAAADEVGKIYL 578

Query: 604 IADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGRERN 663
            ADE + GAVFDLPEEIAK+LL  ELP GNT+ K++KLP LQDDGP +D+YGRFS  +R 
Sbjct: 579 TADENVQGAVFDLPEEIAKDLLTMELPPGNTLTKISKLPALQDDGPATDSYGRFS-NDRG 638

Query: 664 SRNNSRDRRGFRTSRGWGGSRDSDDDG-DLFSRNRSFRPNSSRGRNFKSSGDDWLIGGRR 723
           SRNN R R G   SRG GG    D DG D F R       S R  N   S DDW  GGR+
Sbjct: 639 SRNNRRSRGG-GASRGRGG---WDTDGEDRFRRG----GRSLRSDNDSWSDDDWSGGGRK 698

Query: 724 SSRSSSMD----------------------------RFGGSCFNCGRMGHRASECPDK 753
           S+RSSS                               F G+CFNCG  GHRA++CP+K
Sbjct: 699 SNRSSSFGSRSSSYSSRGSPSFGGRSSSFGGRESNRSFSGACFNCGESGHRATDCPNK 743

[Close]

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot
Match: A0A1D6GDY8 (DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1)

HSP 1 Score: 920.2 bits (2377), Expect = 1.5e-266
Identity = 499/720 (69.31%), Postives = 566/720 (78.61%), Query Frame = 0


Query: 64  SSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISKLGL 123
           ++A+A+PNS+LSE AF+ L   S D  ++    S+ +           D++ELAI++LGL
Sbjct: 42  AAAVASPNSVLSEHAFKRLQLGSDDEDEEGPYGSDADEGF------QGDEEELAIARLGL 101

Query: 124 PQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTEDDE 183
           P  L  +LEKRGITHLFPIQRAVL+PAL GRDLIARAKTGTGKTLAFGIP+IK+L E D+
Sbjct: 102 PDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIKQLMEQDD 161

Query: 184 LRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVD 243
            RS+ RR R PRVLVL PTRELAKQVEKEIKESAP L TVCVYGGVSY  QQNALSRGVD
Sbjct: 162 GRST-RRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVD 221

Query: 244 VVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFS 303
           VVVGTPGRIIDLING SL LGEV+YLVLDEADQMLAVGFEEDVE IL++LP+ RQ+MLFS
Sbjct: 222 VVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPADRQSMLFS 281

Query: 304 ATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAK 363
           ATMP+WVKKL+R+YL NPLTIDLVGDQDEKLAEGIKL+AI  TATSK+TIL DL+TVYAK
Sbjct: 282 ATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRTILSDLITVYAK 341

Query: 364 GGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 423
           GGKTIVFT+TK+DADEVSLAL  SI SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA
Sbjct: 342 GGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 401

Query: 424 SRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVG 483
           +RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQ+RTV SLERDVG
Sbjct: 402 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLERDVG 461

Query: 484 CKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAALAQL 543
           CKFEF +PP IEEVLESSAE V+ TLRGVHPES ++F   A+KL +E G  ALA+ALA L
Sbjct: 462 CKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTEELGPHALASALAHL 521

Query: 544 SGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGKIHL 603
           SGFS PPSSRSLI++EQGWVTLQLTR+P Y RGF S RSVTGFLSD+ S AADEVGKI++
Sbjct: 522 SGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRSVTGFLSDVCSAAADEVGKIYI 581

Query: 604 IADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGRERN 663
            ADE + GAVFDLPEEIAK+LL  E+P GNT+ K++KLP LQDD P +D+YGRFS  +R 
Sbjct: 582 TADENVQGAVFDLPEEIAKDLLTMEVPPGNTLTKISKLPALQDDSPATDSYGRFS-NDRG 641

Query: 664 SRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGGRRS 723
           SRN  R  RG   SRG GG  D+D +       RS R +     N   S DDW  GGR+S
Sbjct: 642 SRN--RRSRGGGASRGRGG-WDTDSEDRYRRGGRSLRSD-----NDSWSDDDWSGGGRKS 701

Query: 724 SRSS-------------------------------SMDRFGGSCFNCGRMGHRASECPDK 753
           +RSS                               S   F G+CFNCG  GHRAS+CP+K
Sbjct: 702 NRSSSSFGGRSSSYGSRGSPSPSFGVRSSSLGGRESSRSFSGACFNCGESGHRASDCPNK 745

[Close]

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot
Match: Q9LUW5 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 3.7e-132
Identity = 238/387 (61.50%), Postives = 296/387 (76.49%), Query Frame = 0


Query: 100 NSSLAFSDDSPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIAR 159
           +S     D      D LAIS+LG+   +  +L  +GI  LFPIQ+AVL PA+EGRD+I R
Sbjct: 88  SSERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGR 147

Query: 160 AKTGTGKTLAFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPY 219
           A+TGTGKTLAFGIPII K+    +  +   R R P  LVL PTRELA+QVEKE +ESAP 
Sbjct: 148 ARTGTGKTLAFGIPIIDKII---KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPS 207

Query: 220 LNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLA 279
           L+T+C+YGG     Q   L  GVDV VGTPGR+IDL+   +LNL EV+++VLDEADQML 
Sbjct: 208 LDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQ 267

Query: 280 VGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIK 339
           VGF EDVE+ILEKLP +RQ+M+FSATMP+W++ L +KYL NPLT+DLVGD D+KLA+GI 
Sbjct: 268 VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGIT 327

Query: 340 LYAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQ 399
            Y+I+  +  + +I+  LVT +AKGGK IVFTQTKRDAD +S ALA S   EALHGDISQ
Sbjct: 328 TYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQ 387

Query: 400 HQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGK 459
            QRERTL GFR G F +LVATDVA+RGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK
Sbjct: 388 SQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGK 447

Query: 460 EGTAILMFTNSQRRTVRSLERDVGCKF 487
           +G+AIL+++  Q R V+ +ER+VG +F
Sbjct: 448 KGSAILIYSQDQSRAVKIIEREVGSRF 471

[Close]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL
Match: A0A1S3BQ06 (RNA helicase OS=Cucumis melo OX=3656 GN=LOC103492086 PE=3 SV=1)

HSP 1 Score: 1385.2 bits (3584), Expect = 0.0e+00
Identity = 714/752 (94.95%), Postives = 733/752 (97.47%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLS 60
           MAS+LGVTAIHHAPNLD+YRR+GTT TASPTPSLSF DKSHL ALK QT F+ S+RRNLS
Sbjct: 1   MASLLGVTAIHHAPNLDLYRRMGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLS 60

Query: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISK 120
           GFTSSAIATPNSILSEEAFRSLDGFSKD LDDNLID EPNSSLAFS    ADDDELAISK
Sbjct: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDPLDDNLIDPEPNSSLAFS----ADDDELAISK 120

Query: 121 LGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTE 180
           L LPQRLTD+L+KRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPI+KKLTE
Sbjct: 121 LNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILKKLTE 180

Query: 181 DDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240
           DDE RS RRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR
Sbjct: 181 DDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240

Query: 241 GVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300
           GVDVVVGTPGR+IDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM
Sbjct: 241 GVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300

Query: 301 LFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTV 360
           LFSATMPTWVKKLARKYL+NPLTIDLVGDQDEKLAEGIKL+AILTTATSKQTILRDLVTV
Sbjct: 301 LFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVTV 360

Query: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420
           YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT
Sbjct: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420

Query: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480
           DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER
Sbjct: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480

Query: 481 DVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAAL 540
           DVGCKFEFANPP IE+VLESSAEQVVVTLRGVHPESIE+FTPTAQKLIDEQG GALAAAL
Sbjct: 481 DVGCKFEFANPPAIEQVLESSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGPGALAAAL 540

Query: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGK 600
           AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADE+GK
Sbjct: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEIGK 600

Query: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660
           IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR
Sbjct: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660

Query: 661 ERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGG 720
           ERNSRN+SRDRRGFRTSRGWG SRDSDDDGD+FSRNRSFR NSS+GRNF+SSGDDWLIGG
Sbjct: 661 ERNSRNSSRDRRGFRTSRGWGSSRDSDDDGDMFSRNRSFRTNSSKGRNFRSSGDDWLIGG 720

Query: 721 RRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           RRSSRSSS+DRFGGSCFNCGRMGHRASECPDK
Sbjct: 721 RRSSRSSSVDRFGGSCFNCGRMGHRASECPDK 748

[Close]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL
Match: A0A0A0M1E9 (RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_1G560830 PE=3 SV=1)

HSP 1 Score: 1367.4 bits (3538), Expect = 0.0e+00
Identity = 702/752 (93.35%), Postives = 731/752 (97.21%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLS 60
           MAS+LGVTAI HAPNLD+YRR GTT TASPTPSLSF DKSHL ALK QT F+ S+RRNLS
Sbjct: 1   MASLLGVTAILHAPNLDLYRRTGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLS 60

Query: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISK 120
           GFTSSAIATPNSILSEEAFRS DGFS+DSLDDNLID EPNSSLAF+    ADDDELAISK
Sbjct: 61  GFTSSAIATPNSILSEEAFRSFDGFSEDSLDDNLIDPEPNSSLAFA----ADDDELAISK 120

Query: 121 LGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTE 180
           L LPQRLTD+L+KRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPI+KKLTE
Sbjct: 121 LNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILKKLTE 180

Query: 181 DDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240
           DDE RS RRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSY+TQQNALSR
Sbjct: 181 DDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYITQQNALSR 240

Query: 241 GVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300
           GVDVVVGTPGR+IDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM
Sbjct: 241 GVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300

Query: 301 LFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTV 360
           LFSATMPTWVKKLARKYL+NPLTIDLVGDQDEKLAEGIKL+AILTTATSKQTILRDLVTV
Sbjct: 301 LFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVTV 360

Query: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420
           YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT
Sbjct: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420

Query: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480
           DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER
Sbjct: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480

Query: 481 DVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAAL 540
           DVGCKFEFANPPG+EEVL+SSAEQVVVTLRGVHPESIE+FTPTAQKLIDEQG GALAAAL
Sbjct: 481 DVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGLGALAAAL 540

Query: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGK 600
           AQLSGF+HPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSD+YSPAADE+GK
Sbjct: 541 AQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSPAADEIGK 600

Query: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660
           IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILK+TKLPPLQDDGPPSDNYGRFSGR
Sbjct: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITKLPPLQDDGPPSDNYGRFSGR 660

Query: 661 ERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGG 720
           ER+SRN+SRDRRG +TSRGWG SRDSDD+GD+FSRNRSFR N+S+GRNF+SSGDDWLIGG
Sbjct: 661 ERSSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSRNRSFRTNNSKGRNFRSSGDDWLIGG 720

Query: 721 RRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           RRSSRSSS+DRFGGSCFNCGRMGHRASECPDK
Sbjct: 721 RRSSRSSSVDRFGGSCFNCGRMGHRASECPDK 748

[Close]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL
Match: A0A6J1DUC8 (RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1)

HSP 1 Score: 1360.1 bits (3519), Expect = 0.0e+00
Identity = 710/765 (92.81%), Postives = 730/765 (95.42%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNL- 60
           MASILGVTAIHHAPNLD+YRR+GT  T SPTPSLSFADKSH+NA KAQTSF++ +RRNL 
Sbjct: 1   MASILGVTAIHHAPNLDIYRRMGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLA 60

Query: 61  -----------SGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDD 120
                      SGF+SSAIATPNSILSEEAF+SLDGFSK    D+ IDS+PNSSL FS D
Sbjct: 61  FSDGSSAGTFKSGFSSSAIATPNSILSEEAFKSLDGFSK----DDFIDSQPNSSLGFSAD 120

Query: 121 SPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180
           SPAD+DELAISKLGLPQRLT+SLEKRGIT LFPIQRAVLVPALEGRDLIARAKTGTGKTL
Sbjct: 121 SPADEDELAISKLGLPQRLTESLEKRGITSLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180

Query: 181 AFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240
           AFGIPIIK+LTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG
Sbjct: 181 AFGIPIIKRLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240

Query: 241 VSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300
           VSYVTQQNAL+RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV
Sbjct: 241 VSYVTQQNALTRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300

Query: 301 ILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTAT 360
           IL+KLP+QRQNMLFSATMPTWVKKLARKYLENPLTIDLVG QDEKLAEGIKLYAILTTAT
Sbjct: 301 ILQKLPTQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGXQDEKLAEGIKLYAILTTAT 360

Query: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420
           SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG
Sbjct: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420

Query: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 480
           FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILMFT
Sbjct: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMFT 480

Query: 481 NSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLI 540
           NSQRRTVRSLERDVGCKFEFANPP IE+VLESSAEQVV TLRGVHPESIEFFTPTAQKLI
Sbjct: 481 NSQRRTVRSLERDVGCKFEFANPPAIEDVLESSAEQVVATLRGVHPESIEFFTPTAQKLI 540

Query: 541 DEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600
           DEQGAGALAAALAQLSGFSHPPSSRSLI+HEQGWVTLQLTRDPSYSRGFLSARSVTGFLS
Sbjct: 541 DEQGAGALAAALAQLSGFSHPPSSRSLISHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600

Query: 601 DIYSPAADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDG 660
           DIYSPAADEVGKIHLIADERI+GAVFDLPEEIAKELLNK LPEGNTILKVTKLPPLQDDG
Sbjct: 601 DIYSPAADEVGKIHLIADERIHGAVFDLPEEIAKELLNKPLPEGNTILKVTKLPPLQDDG 660

Query: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRP-NSSRGR 720
           PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWG  RDSDDDGDLFSRNRSFR  NSSR R
Sbjct: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGSGRDSDDDGDLFSRNRSFRTNNSSRSR 720

Query: 721 NFKSSGDDWLIGGRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           NFKSSGDDWLIGGRRSSRSSSMD FGGSCFNCGRMGHRASECPDK
Sbjct: 721 NFKSSGDDWLIGGRRSSRSSSMDGFGGSCFNCGRMGHRASECPDK 761

[Close]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL
Match: A0A6J1DXX8 (RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1)

HSP 1 Score: 1346.3 bits (3483), Expect = 0.0e+00
Identity = 705/765 (92.16%), Postives = 725/765 (94.77%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNL- 60
           MASILGVTAIHHAPNLD+YRR+GT  T SPTPSLSFADKSH+NA KAQTSF++ +RRNL 
Sbjct: 1   MASILGVTAIHHAPNLDIYRRMGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLA 60

Query: 61  -----------SGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDD 120
                      SGF+SSAIATPNSILSEEAF+SLDGFSK    D+ IDS+PNSSL FS D
Sbjct: 61  FSDGSSAGTFKSGFSSSAIATPNSILSEEAFKSLDGFSK----DDFIDSQPNSSLGFSAD 120

Query: 121 SPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180
           SPAD+DELAISKLGLPQRLT+SLEKRGIT LFPIQRAVLVPALEGRDLIARAKTGTGKTL
Sbjct: 121 SPADEDELAISKLGLPQRLTESLEKRGITSLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180

Query: 181 AFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240
           AFGIPIIK+LTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG
Sbjct: 181 AFGIPIIKRLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240

Query: 241 VSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300
           VSYVTQQNAL+RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV
Sbjct: 241 VSYVTQQNALTRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300

Query: 301 ILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTAT 360
           IL+KLP+QRQNMLFSATMPTWVKKLARKYLENPLTIDLVG QDEKLAEGIKLYAILTTAT
Sbjct: 301 ILQKLPTQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGXQDEKLAEGIKLYAILTTAT 360

Query: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420
           SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG
Sbjct: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420

Query: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 480
           FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILMFT
Sbjct: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMFT 480

Query: 481 NSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLI 540
           NSQRRTVRSLERDVGCKFEFANPP IE+VLESSAEQVV TLRGVHPESIEFFTPTAQKLI
Sbjct: 481 NSQRRTVRSLERDVGCKFEFANPPAIEDVLESSAEQVVATLRGVHPESIEFFTPTAQKLI 540

Query: 541 DEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600
           DEQGAGALAAALAQLSGFSHPPSSRSLI+HEQGWVTLQLTRDPSYSRGFLSARSVTGFLS
Sbjct: 541 DEQGAGALAAALAQLSGFSHPPSSRSLISHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600

Query: 601 DIYSPAADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDG 660
           DIYSPAADEVGKIHLIADERI+GAVFDLPEEIAKELLNK LPEGNTILKVTKLPPLQDDG
Sbjct: 601 DIYSPAADEVGKIHLIADERIHGAVFDLPEEIAKELLNKPLPEGNTILKVTKLPPLQDDG 660

Query: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRP-NSSRGR 720
           PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWG  RDSDDDGDLFSRNRSFR  NSSR R
Sbjct: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGSGRDSDDDGDLFSRNRSFRTNNSSRSR 720

Query: 721 NFKSSGDDWLIGGRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           NFKSSGDDWLIGGRRSS      RFGGSCFNCGRMGHRASECPDK
Sbjct: 721 NFKSSGDDWLIGGRRSS------RFGGSCFNCGRMGHRASECPDK 755

[Close]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL
Match: A0A6J1EUB8 (RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111437838 PE=3 SV=1)

HSP 1 Score: 1343.6 bits (3476), Expect = 0.0e+00
Identity = 707/761 (92.90%), Postives = 732/761 (96.19%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGT----TLTASPTPSLSFADKSHLNALKAQTSF--TTS 60
           MASILGVTAIHHAPNLDMYRR+GT    T T S TPSLSFADKSH N+LKA TSF  ++S
Sbjct: 1   MASILGVTAIHHAPNLDMYRRMGTPATATATVSSTPSLSFADKSHFNSLKALTSFLSSSS 60

Query: 61  TRRNLSGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDN-LIDSEPNSSLAFSDDSPADD 120
           +RRN SGF+SSAIATPNSILSEEAFRSLDGFSKDSLDD+ LIDSE NSSLAFS     DD
Sbjct: 61  SRRNFSGFSSSAIATPNSILSEEAFRSLDGFSKDSLDDDGLIDSEANSSLAFS-----DD 120

Query: 121 DELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIP 180
           DELAISKLGLPQRL+D+LEKRGIT LF IQRAVLVPALEGRDLIARAKTGTGKTLAFGIP
Sbjct: 121 DELAISKLGLPQRLSDALEKRGITQLFAIQRAVLVPALEGRDLIARAKTGTGKTLAFGIP 180

Query: 181 IIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVT 240
           IIKK+TEDDEL+S RRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVT
Sbjct: 181 IIKKITEDDELKSPRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVT 240

Query: 241 QQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 300
           QQ+ALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL
Sbjct: 241 QQSALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 300

Query: 301 PSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTI 360
           PSQRQNMLFSATMPTWVKKLARKYL+NPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTI
Sbjct: 301 PSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTI 360

Query: 361 LRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGK 420
           LRDLVTVYAKGGKTIVFT+TKRDADEVSLALAN+ITSEALHGDISQHQRERTLNGFRQGK
Sbjct: 361 LRDLVTVYAKGGKTIVFTRTKRDADEVSLALANTITSEALHGDISQHQRERTLNGFRQGK 420

Query: 421 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRR 480
           FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTN+QRR
Sbjct: 421 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNNQRR 480

Query: 481 TVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGA 540
           TVRSLERDVGCKFEFANPPGIE+VLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGA
Sbjct: 481 TVRSLERDVGCKFEFANPPGIEKVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGA 540

Query: 541 GALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSP 600
           GALAAALAQLSGFS PPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSD+YSP
Sbjct: 541 GALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSP 600

Query: 601 AADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDN 660
           AADEVGKIHLIADERINGAVFDLPEEIAKELLNK+LPEGNT+LK+TKLPPLQDDGPPSD+
Sbjct: 601 AADEVGKIHLIADERINGAVFDLPEEIAKELLNKDLPEGNTLLKITKLPPLQDDGPPSDS 660

Query: 661 YGRFSGRERNSRNNSRDRRGFRTSRGWGG-SRDSDDDGDLFSRNRSFRPNSSRGRNFKSS 720
           YGRFSGRER+SRN+SRDRRG RTSRGWGG SRDSDDDGDLFSRNR FR NSSRGRNFKSS
Sbjct: 661 YGRFSGRERSSRNSSRDRRGSRTSRGWGGSSRDSDDDGDLFSRNRGFRSNSSRGRNFKSS 720

Query: 721 GDDWLIGG--RRSSRSSSMDRFGGSCFNCGRMGHRASECPD 752
           GDDWLIGG  RRSSRSSSMDRFGGSCFNCGRMGHRASECP+
Sbjct: 721 GDDWLIGGGSRRSSRSSSMDRFGGSCFNCGRMGHRASECPN 756

[Close]

BLAST of Lcy03g000120 vs. NCBI nr
Match: XP_038879136.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 1395.2 bits (3610), Expect = 0.0e+00
Identity = 723/753 (96.02%), Postives = 738/753 (98.01%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLS 60
           MAS+LGVTAIHHAPNLDMYRR+GTT TASPTPSLSFA+KSHL ALKAQT F+ S+RRNLS
Sbjct: 1   MASLLGVTAIHHAPNLDMYRRMGTTATASPTPSLSFAEKSHLIALKAQTCFSGSSRRNLS 60

Query: 61  GFT-SSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAIS 120
           GFT SSAIATPNSILSEEAFRSLDGFSKDSLD NL+DSE NSSLAFS   PADDDELAIS
Sbjct: 61  GFTSSSAIATPNSILSEEAFRSLDGFSKDSLDGNLVDSESNSSLAFSTAPPADDDELAIS 120

Query: 121 KLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLT 180
           KL LPQRLTD+L+KRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPI+KKLT
Sbjct: 121 KLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILKKLT 180

Query: 181 EDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALS 240
           EDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSY+TQQNALS
Sbjct: 181 EDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYITQQNALS 240

Query: 241 RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQN 300
           RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQ+
Sbjct: 241 RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQS 300

Query: 301 MLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVT 360
           MLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKL+AILTTATSKQTILRDLVT
Sbjct: 301 MLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVT 360

Query: 361 VYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 420
           VYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 361 VYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 420

Query: 421 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE 480
           TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE
Sbjct: 421 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE 480

Query: 481 RDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAA 540
           RDVGCKFEFANPP IEEVLESSAEQVVVTLRGVHPESIEFFTPTA+KLIDEQG GALAAA
Sbjct: 481 RDVGCKFEFANPPAIEEVLESSAEQVVVTLRGVHPESIEFFTPTARKLIDEQGPGALAAA 540

Query: 541 LAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVG 600
           LAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVG
Sbjct: 541 LAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVG 600

Query: 601 KIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSG 660
           KIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSG
Sbjct: 601 KIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSG 660

Query: 661 RERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIG 720
           RERNSRN+SRDRRGFRTSRGWG SRDSDDDGDLFSRNRSFR NSSRGRNFKSSGDDWLIG
Sbjct: 661 RERNSRNSSRDRRGFRTSRGWGSSRDSDDDGDLFSRNRSFRTNSSRGRNFKSSGDDWLIG 720

Query: 721 GRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           GRRSSRSSS+DRFGGSCFNCGRMGHRASECPDK
Sbjct: 721 GRRSSRSSSVDRFGGSCFNCGRMGHRASECPDK 753

[Close]

BLAST of Lcy03g000120 vs. NCBI nr
Match: XP_008450498.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 1385.2 bits (3584), Expect = 0.0e+00
Identity = 714/752 (94.95%), Postives = 733/752 (97.47%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLS 60
           MAS+LGVTAIHHAPNLD+YRR+GTT TASPTPSLSF DKSHL ALK QT F+ S+RRNLS
Sbjct: 1   MASLLGVTAIHHAPNLDLYRRMGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLS 60

Query: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISK 120
           GFTSSAIATPNSILSEEAFRSLDGFSKD LDDNLID EPNSSLAFS    ADDDELAISK
Sbjct: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDPLDDNLIDPEPNSSLAFS----ADDDELAISK 120

Query: 121 LGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTE 180
           L LPQRLTD+L+KRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPI+KKLTE
Sbjct: 121 LNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILKKLTE 180

Query: 181 DDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240
           DDE RS RRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR
Sbjct: 181 DDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240

Query: 241 GVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300
           GVDVVVGTPGR+IDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM
Sbjct: 241 GVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300

Query: 301 LFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTV 360
           LFSATMPTWVKKLARKYL+NPLTIDLVGDQDEKLAEGIKL+AILTTATSKQTILRDLVTV
Sbjct: 301 LFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVTV 360

Query: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420
           YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT
Sbjct: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420

Query: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480
           DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER
Sbjct: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480

Query: 481 DVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAAL 540
           DVGCKFEFANPP IE+VLESSAEQVVVTLRGVHPESIE+FTPTAQKLIDEQG GALAAAL
Sbjct: 481 DVGCKFEFANPPAIEQVLESSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGPGALAAAL 540

Query: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGK 600
           AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADE+GK
Sbjct: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEIGK 600

Query: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660
           IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR
Sbjct: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660

Query: 661 ERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGG 720
           ERNSRN+SRDRRGFRTSRGWG SRDSDDDGD+FSRNRSFR NSS+GRNF+SSGDDWLIGG
Sbjct: 661 ERNSRNSSRDRRGFRTSRGWGSSRDSDDDGDMFSRNRSFRTNSSKGRNFRSSGDDWLIGG 720

Query: 721 RRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           RRSSRSSS+DRFGGSCFNCGRMGHRASECPDK
Sbjct: 721 RRSSRSSSVDRFGGSCFNCGRMGHRASECPDK 748

[Close]

BLAST of Lcy03g000120 vs. NCBI nr
Match: XP_004135577.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis sativus] >KGN66001.1 hypothetical protein Csa_007094 [Cucumis sativus])

HSP 1 Score: 1367.4 bits (3538), Expect = 0.0e+00
Identity = 702/752 (93.35%), Postives = 731/752 (97.21%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNLS 60
           MAS+LGVTAI HAPNLD+YRR GTT TASPTPSLSF DKSHL ALK QT F+ S+RRNLS
Sbjct: 1   MASLLGVTAILHAPNLDLYRRTGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLS 60

Query: 61  GFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISK 120
           GFTSSAIATPNSILSEEAFRS DGFS+DSLDDNLID EPNSSLAF+    ADDDELAISK
Sbjct: 61  GFTSSAIATPNSILSEEAFRSFDGFSEDSLDDNLIDPEPNSSLAFA----ADDDELAISK 120

Query: 121 LGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTE 180
           L LPQRLTD+L+KRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPI+KKLTE
Sbjct: 121 LNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILKKLTE 180

Query: 181 DDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSR 240
           DDE RS RRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSY+TQQNALSR
Sbjct: 181 DDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYITQQNALSR 240

Query: 241 GVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300
           GVDVVVGTPGR+IDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM
Sbjct: 241 GVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNM 300

Query: 301 LFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTV 360
           LFSATMPTWVKKLARKYL+NPLTIDLVGDQDEKLAEGIKL+AILTTATSKQTILRDLVTV
Sbjct: 301 LFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVTV 360

Query: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420
           YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT
Sbjct: 361 YAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVAT 420

Query: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480
           DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER
Sbjct: 421 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER 480

Query: 481 DVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAAL 540
           DVGCKFEFANPPG+EEVL+SSAEQVVVTLRGVHPESIE+FTPTAQKLIDEQG GALAAAL
Sbjct: 481 DVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGLGALAAAL 540

Query: 541 AQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGK 600
           AQLSGF+HPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSD+YSPAADE+GK
Sbjct: 541 AQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSPAADEIGK 600

Query: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGR 660
           IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILK+TKLPPLQDDGPPSDNYGRFSGR
Sbjct: 601 IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITKLPPLQDDGPPSDNYGRFSGR 660

Query: 661 ERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGG 720
           ER+SRN+SRDRRG +TSRGWG SRDSDD+GD+FSRNRSFR N+S+GRNF+SSGDDWLIGG
Sbjct: 661 ERSSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSRNRSFRTNNSKGRNFRSSGDDWLIGG 720

Query: 721 RRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           RRSSRSSS+DRFGGSCFNCGRMGHRASECPDK
Sbjct: 721 RRSSRSSSVDRFGGSCFNCGRMGHRASECPDK 748

[Close]

BLAST of Lcy03g000120 vs. NCBI nr
Match: XP_022157915.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 1360.1 bits (3519), Expect = 0.0e+00
Identity = 710/765 (92.81%), Postives = 730/765 (95.42%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNL- 60
           MASILGVTAIHHAPNLD+YRR+GT  T SPTPSLSFADKSH+NA KAQTSF++ +RRNL 
Sbjct: 1   MASILGVTAIHHAPNLDIYRRMGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLA 60

Query: 61  -----------SGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDD 120
                      SGF+SSAIATPNSILSEEAF+SLDGFSK    D+ IDS+PNSSL FS D
Sbjct: 61  FSDGSSAGTFKSGFSSSAIATPNSILSEEAFKSLDGFSK----DDFIDSQPNSSLGFSAD 120

Query: 121 SPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180
           SPAD+DELAISKLGLPQRLT+SLEKRGIT LFPIQRAVLVPALEGRDLIARAKTGTGKTL
Sbjct: 121 SPADEDELAISKLGLPQRLTESLEKRGITSLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180

Query: 181 AFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240
           AFGIPIIK+LTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG
Sbjct: 181 AFGIPIIKRLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240

Query: 241 VSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300
           VSYVTQQNAL+RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV
Sbjct: 241 VSYVTQQNALTRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300

Query: 301 ILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTAT 360
           IL+KLP+QRQNMLFSATMPTWVKKLARKYLENPLTIDLVG QDEKLAEGIKLYAILTTAT
Sbjct: 301 ILQKLPTQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGXQDEKLAEGIKLYAILTTAT 360

Query: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420
           SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG
Sbjct: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420

Query: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 480
           FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILMFT
Sbjct: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMFT 480

Query: 481 NSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLI 540
           NSQRRTVRSLERDVGCKFEFANPP IE+VLESSAEQVV TLRGVHPESIEFFTPTAQKLI
Sbjct: 481 NSQRRTVRSLERDVGCKFEFANPPAIEDVLESSAEQVVATLRGVHPESIEFFTPTAQKLI 540

Query: 541 DEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600
           DEQGAGALAAALAQLSGFSHPPSSRSLI+HEQGWVTLQLTRDPSYSRGFLSARSVTGFLS
Sbjct: 541 DEQGAGALAAALAQLSGFSHPPSSRSLISHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600

Query: 601 DIYSPAADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDG 660
           DIYSPAADEVGKIHLIADERI+GAVFDLPEEIAKELLNK LPEGNTILKVTKLPPLQDDG
Sbjct: 601 DIYSPAADEVGKIHLIADERIHGAVFDLPEEIAKELLNKPLPEGNTILKVTKLPPLQDDG 660

Query: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRP-NSSRGR 720
           PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWG  RDSDDDGDLFSRNRSFR  NSSR R
Sbjct: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGSGRDSDDDGDLFSRNRSFRTNNSSRSR 720

Query: 721 NFKSSGDDWLIGGRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           NFKSSGDDWLIGGRRSSRSSSMD FGGSCFNCGRMGHRASECPDK
Sbjct: 721 NFKSSGDDWLIGGRRSSRSSSMDGFGGSCFNCGRMGHRASECPDK 761

[Close]

BLAST of Lcy03g000120 vs. NCBI nr
Match: XP_022157919.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 1346.3 bits (3483), Expect = 0.0e+00
Identity = 705/765 (92.16%), Postives = 725/765 (94.77%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRRNL- 60
           MASILGVTAIHHAPNLD+YRR+GT  T SPTPSLSFADKSH+NA KAQTSF++ +RRNL 
Sbjct: 1   MASILGVTAIHHAPNLDIYRRMGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLA 60

Query: 61  -----------SGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDD 120
                      SGF+SSAIATPNSILSEEAF+SLDGFSK    D+ IDS+PNSSL FS D
Sbjct: 61  FSDGSSAGTFKSGFSSSAIATPNSILSEEAFKSLDGFSK----DDFIDSQPNSSLGFSAD 120

Query: 121 SPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180
           SPAD+DELAISKLGLPQRLT+SLEKRGIT LFPIQRAVLVPALEGRDLIARAKTGTGKTL
Sbjct: 121 SPADEDELAISKLGLPQRLTESLEKRGITSLFPIQRAVLVPALEGRDLIARAKTGTGKTL 180

Query: 181 AFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240
           AFGIPIIK+LTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG
Sbjct: 181 AFGIPIIKRLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGG 240

Query: 241 VSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300
           VSYVTQQNAL+RGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV
Sbjct: 241 VSYVTQQNALTRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEV 300

Query: 301 ILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTAT 360
           IL+KLP+QRQNMLFSATMPTWVKKLARKYLENPLTIDLVG QDEKLAEGIKLYAILTTAT
Sbjct: 301 ILQKLPTQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGXQDEKLAEGIKLYAILTTAT 360

Query: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420
           SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG
Sbjct: 361 SKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNG 420

Query: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 480
           FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILMFT
Sbjct: 421 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMFT 480

Query: 481 NSQRRTVRSLERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLI 540
           NSQRRTVRSLERDVGCKFEFANPP IE+VLESSAEQVV TLRGVHPESIEFFTPTAQKLI
Sbjct: 481 NSQRRTVRSLERDVGCKFEFANPPAIEDVLESSAEQVVATLRGVHPESIEFFTPTAQKLI 540

Query: 541 DEQGAGALAAALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600
           DEQGAGALAAALAQLSGFSHPPSSRSLI+HEQGWVTLQLTRDPSYSRGFLSARSVTGFLS
Sbjct: 541 DEQGAGALAAALAQLSGFSHPPSSRSLISHEQGWVTLQLTRDPSYSRGFLSARSVTGFLS 600

Query: 601 DIYSPAADEVGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDG 660
           DIYSPAADEVGKIHLIADERI+GAVFDLPEEIAKELLNK LPEGNTILKVTKLPPLQDDG
Sbjct: 601 DIYSPAADEVGKIHLIADERIHGAVFDLPEEIAKELLNKPLPEGNTILKVTKLPPLQDDG 660

Query: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGGSRDSDDDGDLFSRNRSFRP-NSSRGR 720
           PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWG  RDSDDDGDLFSRNRSFR  NSSR R
Sbjct: 661 PPSDNYGRFSGRERNSRNNSRDRRGFRTSRGWGSGRDSDDDGDLFSRNRSFRTNNSSRSR 720

Query: 721 NFKSSGDDWLIGGRRSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           NFKSSGDDWLIGGRRSS      RFGGSCFNCGRMGHRASECPDK
Sbjct: 721 NFKSSGDDWLIGGRRSS------RFGGSCFNCGRMGHRASECPDK 755

[Close]

BLAST of Lcy03g000120 vs. TAIR 10
Match: AT5G26742.1 (DEAD box RNA helicase (RH3) )

HSP 1 Score: 976.9 bits (2524), Expect = 9.4e-285
Identity = 547/769 (71.13%), Postives = 617/769 (80.23%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRR--N 60
           MAS +GV +++  P+L++ +    +   S   SLS  DK     L    S    TRR  +
Sbjct: 1   MASTVGVPSLYQVPHLEISK--PNSKKRSNCLSLSL-DKPFFTPL----SLVRRTRRIHS 60

Query: 61  LSGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAI 120
            S    SA+ATPNS+LSEEAF+SL     D  D   +D + N+  A       D +ELAI
Sbjct: 61  SSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYD---LDGDNNNVEA------DDGEELAI 120

Query: 121 SKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKL 180
           SKL LPQRL +SLEKRGITHLFPIQRAVLVPAL+GRD+IARAKTGTGKTLAFGIPIIK+L
Sbjct: 121 SKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 180

Query: 181 TED-DELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNA 240
           TE+  +  + RR  RLP+ LVL PTRELAKQVEKEIKESAPYL+TVCVYGGVSY  QQ+A
Sbjct: 181 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSA 240

Query: 241 LSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQR 300
           L+RGVDVVVGTPGRIIDLI G SL LGEVEYLVLDEADQMLAVGFEE VE ILE LP++R
Sbjct: 241 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 300

Query: 301 QNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDL 360
           Q+MLFSATMPTWVKKLARKYL+NPL IDLVGDQDEKLAEGIKLYAI TT+TSK+TIL DL
Sbjct: 301 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 360

Query: 361 VTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVL 420
           +TVYAKGGKTIVFTQTKRDADEVSLAL+NSI +EALHGDISQHQRERTLN FRQGKFTVL
Sbjct: 361 ITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 420

Query: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRS 480
           VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILM T+SQ+RTVRS
Sbjct: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 480

Query: 481 LERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALA 540
           LERDVGC FEF +PP + ++LESSA+QVV TL GVHP+SI+FF+ TAQKL +E+G  ALA
Sbjct: 481 LERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALA 540

Query: 541 AALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADE 600
           AALA LSGFS PPSSRSL++HE+GWVTLQL RDP+ +RGFLSARSVTGFLSD+Y  AADE
Sbjct: 541 AALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADE 600

Query: 601 VGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRF 660
           VGKI LIAD+RI GAVFDLPEEIAKELL K++PEGN++  +TKLPPLQDDGP SDNYGRF
Sbjct: 601 VGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRF 660

Query: 661 SGRERNSR--NNSRDRRGFR--TSRG---WG-----GSRDSDDDGDLFSRNRSFRPNSSR 720
           S R+R  R    SR  RG R  +SRG   WG     GSR S   G  +SR  S    SSR
Sbjct: 661 SSRDRMPRGGGGSRGSRGGRGGSSRGRDSWGGDDDRGSRRSSGGGSSWSRGGS----SSR 720

Query: 721 GRNFKSSGDDWLIGGR--RSSRSSSMDRFGGSCFNCGRMGHRASECPDK 753
           G     S DDWLIGGR   SSR+ S + FGGSCF CG+ GHRA++CPDK
Sbjct: 721 G-----SSDDWLIGGRSSSSSRAPSRESFGGSCFICGKSGHRATDCPDK 744

[Close]

BLAST of Lcy03g000120 vs. TAIR 10
Match: AT5G26742.2 (DEAD box RNA helicase (RH3) )

HSP 1 Score: 975.3 bits (2520), Expect = 2.7e-284
Identity = 547/770 (71.04%), Postives = 616/770 (80.00%), Query Frame = 0


Query: 1   MASILGVTAIHHAPNLDMYRRLGTTLTASPTPSLSFADKSHLNALKAQTSFTTSTRR--N 60
           MAS +GV +++  P+L++ +    +   S   SLS  DK     L    S    TRR  +
Sbjct: 1   MASTVGVPSLYQVPHLEISK--PNSKKRSNCLSLSL-DKPFFTPL----SLVRRTRRIHS 60

Query: 61  LSGFTSSAIATPNSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAI 120
            S    SA+ATPNS+LSEEAF+SL     D  D   +D + N+  A       D +ELAI
Sbjct: 61  SSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYD---LDGDNNNVEA------DDGEELAI 120

Query: 121 SKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKL 180
           SKL LPQRL +SLEKRGITHLFPIQRAVLVPAL+GRD+IARAKTGTGKTLAFGIPIIK+L
Sbjct: 121 SKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 180

Query: 181 TED-DELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNA 240
           TE+  +  + RR  RLP+ LVL PTRELAKQVEKEIKESAPYL+TVCVYGGVSY  QQ+A
Sbjct: 181 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSA 240

Query: 241 LSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQR 300
           L+RGVDVVVGTPGRIIDLI G SL LGEVEYLVLDEADQMLAVGFEE VE ILE LP++R
Sbjct: 241 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 300

Query: 301 QNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDL 360
           Q+MLFSATMPTWVKKLARKYL+NPL IDLVGDQDEKLAEGIKLYAI TT+TSK+TIL DL
Sbjct: 301 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 360

Query: 361 VTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVL 420
           +TVYAKGGKTIVFTQTKRDADEVSLAL+NSI +EALHGDISQHQRERTLN FRQGKFTVL
Sbjct: 361 ITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 420

Query: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRS 480
           VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG+AILM T+SQ+RTVRS
Sbjct: 421 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 480

Query: 481 LERDVGCKFEFANPPGIEEVLESSAEQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALA 540
           LERDVGC FEF +PP + ++LESSA+QVV TL GVHP+SI+FF+ TAQKL +E+G  ALA
Sbjct: 481 LERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALA 540

Query: 541 AALAQLSGFSHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADE 600
           AALA LSGFS PPSSRSL++HE+GWVTLQL RDP+ +RGFLSARSVTGFLSD+Y  AADE
Sbjct: 541 AALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADE 600

Query: 601 VGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRF 660
           VGKI LIAD+RI GAVFDLPEEIAKELL K++PEGN++  +TKLPPLQDDGP SDNYGRF
Sbjct: 601 VGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRF 660

Query: 661 SGRERNSR--NNSRDRRGFR--TSRG---WG-----GSRDSDDDGDLFSRNRSFRPNSSR 720
           S R+R  R    SR  RG R  +SRG   WG     GSR S   G  +SR  S    SSR
Sbjct: 661 SSRDRMPRGGGGSRGSRGGRGGSSRGRDSWGGDDDRGSRRSSGGGSSWSRGGS----SSR 720

Query: 721 GRNFKSSGDDWLIGGRRSSRSSSMDR---FGGSCFNCGRMGHRASECPDK 753
           G     S DDWLIGGR SS S +  R   FGGSCF CG+ GHRA++CPDK
Sbjct: 721 G-----SSDDWLIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPDK 745

[Close]

BLAST of Lcy03g000120 vs. TAIR 10
Match: AT5G26742.3 (DEAD box RNA helicase (RH3) )

HSP 1 Score: 897.9 bits (2319), Expect = 5.6e-261
Identity = 481/625 (76.96%), Postives = 532/625 (85.12%), Query Frame = 0


Query: 144 RAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTED-DELRSSRRRSRLPRVLVLTPT 203
           RAVLVPAL+GRD+IARAKTGTGKTLAFGIPIIK+LTE+  +  + RR  RLP+ LVL PT
Sbjct: 37  RAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPT 96

Query: 204 RELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLN 263
           RELAKQVEKEIKESAPYL+TVCVYGGVSY  QQ+AL+RGVDVVVGTPGRIIDLI G SL 
Sbjct: 97  RELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLK 156

Query: 264 LGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLENPL 323
           LGEVEYLVLDEADQMLAVGFEE VE ILE LP++RQ+MLFSATMPTWVKKLARKYL+NPL
Sbjct: 157 LGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPL 216

Query: 324 TIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSL 383
            IDLVGDQDEKLAEGIKLYAI TT+TSK+TIL DL+TVYAKGGKTIVFTQTKRDADEVSL
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 276

Query: 384 ALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 443
           AL+NSI +EALHGDISQHQRERTLN FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN
Sbjct: 277 ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 336

Query: 444 DPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGIEEVLESSA 503
           DPETFVHRSGRTGRAGKEG+AILM T+SQ+RTVRSLERDVGC FEF +PP + ++LESSA
Sbjct: 337 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSA 396

Query: 504 EQVVVTLRGVHPESIEFFTPTAQKLIDEQGAGALAAALAQLSGFSHPPSSRSLINHEQGW 563
           +QVV TL GVHP+SI+FF+ TAQKL +E+G  ALAAALA LSGFS PPSSRSL++HE+GW
Sbjct: 397 DQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGW 456

Query: 564 VTLQLTRDPSYSRGFLSARSVTGFLSDIYSPAADEVGKIHLIADERINGAVFDLPEEIAK 623
           VTLQL RDP+ +RGFLSARSVTGFLSD+Y  AADEVGKI LIAD+RI GAVFDLPEEIAK
Sbjct: 457 VTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAK 516

Query: 624 ELLNKELPEGNTILKVTKLPPLQDDGPPSDNYGRFSGRERNSR--NNSRDRRGFR--TSR 683
           ELL K++PEGN++  +TKLPPLQDDGP SDNYGRFS R+R  R    SR  RG R  +SR
Sbjct: 517 ELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRGGRGGSSR 576

Query: 684 G---WG-----GSRDSDDDGDLFSRNRSFRPNSSRGRNFKSSGDDWLIGGRRSSRSSSMD 743
           G   WG     GSR S   G  +SR  S    SSRG     S DDWLIGGR SS S +  
Sbjct: 577 GRDSWGGDDDRGSRRSSGGGSSWSRGGS----SSRG-----SSDDWLIGGRSSSSSRAPS 636

Query: 744 R---FGGSCFNCGRMGHRASECPDK 753
           R   FGGSCF CG+ GHRA++CPDK
Sbjct: 637 RERSFGGSCFICGKSGHRATDCPDK 652

[Close]

BLAST of Lcy03g000120 vs. TAIR 10
Match: AT3G22330.1 (putative mitochondrial RNA helicase 2 )

HSP 1 Score: 473.8 bits (1218), Expect = 2.6e-133
Identity = 238/387 (61.50%), Postives = 296/387 (76.49%), Query Frame = 0


Query: 100 NSSLAFSDDSPADDDELAISKLGLPQRLTDSLEKRGITHLFPIQRAVLVPALEGRDLIAR 159
           +S     D      D LAIS+LG+   +  +L  +GI  LFPIQ+AVL PA+EGRD+I R
Sbjct: 88  SSERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGR 147

Query: 160 AKTGTGKTLAFGIPIIKKLTEDDELRSSRRRSRLPRVLVLTPTRELAKQVEKEIKESAPY 219
           A+TGTGKTLAFGIPII K+    +  +   R R P  LVL PTRELA+QVEKE +ESAP 
Sbjct: 148 ARTGTGKTLAFGIPIIDKII---KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPS 207

Query: 220 LNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLNLGEVEYLVLDEADQMLA 279
           L+T+C+YGG     Q   L  GVDV VGTPGR+IDL+   +LNL EV+++VLDEADQML 
Sbjct: 208 LDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQ 267

Query: 280 VGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLENPLTIDLVGDQDEKLAEGIK 339
           VGF EDVE+ILEKLP +RQ+M+FSATMP+W++ L +KYL NPLT+DLVGD D+KLA+GI 
Sbjct: 268 VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGIT 327

Query: 340 LYAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQ 399
            Y+I+  +  + +I+  LVT +AKGGK IVFTQTKRDAD +S ALA S   EALHGDISQ
Sbjct: 328 TYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQ 387

Query: 400 HQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGK 459
            QRERTL GFR G F +LVATDVA+RGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK
Sbjct: 388 SQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGK 447

Query: 460 EGTAILMFTNSQRRTVRSLERDVGCKF 487
           +G+AIL+++  Q R V+ +ER+VG +F
Sbjct: 448 KGSAILIYSQDQSRAVKIIEREVGSRF 471

[Close]

BLAST of Lcy03g000120 vs. TAIR 10
Match: AT3G22310.1 (putative mitochondrial RNA helicase 1 )

HSP 1 Score: 463.0 bits (1190), Expect = 4.6e-130
Identity = 241/416 (57.93%), Postives = 307/416 (73.80%), Query Frame = 0


Query: 71  NSILSEEAFRSLDGFSKDSLDDNLIDSEPNSSLAFSDDSPADDDELAISKLGLPQRLTDS 130
           +SI+S   F + +       D  + DSE       S  S    D LAI+ LG+   +  +
Sbjct: 78  SSIVSSAGFAAQEYAPSYENDGGIGDSE-------SVGSSGGGDGLAIADLGISPEIVKA 137

Query: 131 LEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKKLTEDDELRSSRRR 190
           L+ RGI  LFPIQ+AVL PA+EGRD+I RA+TGTGKTLAFGIPII K+    +  +   R
Sbjct: 138 LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII---KFNAKHGR 197

Query: 191 SRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPG 250
            + P+ LVL PTRELA+QVEKE +ESAP L+T+C+YGG     Q   L+ G+DV VGTPG
Sbjct: 198 GKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 257

Query: 251 RIIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWV 310
           RIIDL+   +LNL EV+++VLDEADQML VGF EDVE+IL+KLP++RQ+M+FSATMP+W+
Sbjct: 258 RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 317

Query: 311 KKLARKYLENPLTIDLVGDQDEKLAEGIKLYAILTTATSKQTILRDLVTVYAKGGKTIVF 370
           + L +KYL NPLTIDLVGD D+KLA+GI +Y+I   +  + +I+  LV  + KGGK IVF
Sbjct: 318 RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVF 377

Query: 371 TQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIP 430
           TQTKRDAD ++  LA S   EALHGDISQ QRERTL GFR G F++LVATDVA+RGLD+P
Sbjct: 378 TQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVP 437

Query: 431 NVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKF 487
           NVDLVIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+    Q R V+ +E++VG +F
Sbjct: 438 NVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRF 483

The following BLAST results are available for this feature:

BLAST of Lcy03g000120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7S8	3.9e-283	71.04	DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q0DM51	2.8e-273	67.63	DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japo...	[more]
A0A1D6LAB7	6.0e-268	70.06	DEAD-box ATP-dependent RNA helicase 3B, chloroplastic OS=Zea mays OX=4577 GN=RH3...	[more]
A0A1D6GDY8	1.5e-266	69.31	DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays OX=4577 GN=RH3...	[more]
Q9LUW5	3.7e-132	61.50	DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy03g000120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQ06	0.0e+00	94.95	RNA helicase OS=Cucumis melo OX=3656 GN=LOC103492086 PE=3 SV=1	[more]
A0A0A0M1E9	0.0e+00	93.35	RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_1G560830 PE=3 SV=1	[more]
A0A6J1DUC8	0.0e+00	92.81	RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1	[more]
A0A6J1DXX8	0.0e+00	92.16	RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1	[more]
A0A6J1EUB8	0.0e+00	92.90	RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111437838 PE=3 SV=1	[more]

BLAST of Lcy03g000120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879136.1	0.0e+00	96.02	DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Benincasa hispida]	[more]
XP_008450498.1	0.0e+00	94.95	PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis melo]	[more]
XP_004135577.1	0.0e+00	93.35	DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis sativus] >KGN66001...	[more]
XP_022157915.1	0.0e+00	92.81	DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1 [Momordica chara...	[more]
XP_022157919.1	0.0e+00	92.16	DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X2 [Momordica chara...	[more]

BLAST of Lcy03g000120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26742.1	9.4e-285	71.13	DEAD box RNA helicase (RH3)	[more]
AT5G26742.2	2.7e-284	71.04	DEAD box RNA helicase (RH3)	[more]
AT5G26742.3	5.6e-261	76.96	DEAD box RNA helicase (RH3)	[more]
AT3G22330.1	2.6e-133	61.50	putative mitochondrial RNA helicase 2	[more]
AT3G22310.1	4.6e-130	57.93	putative mitochondrial RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 378..458 e-value: 6.5E-32 score: 122.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 352..458 e-value: 1.8E-31 score: 108.7
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 353..513 score: 23.296028
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 735..751 e-value: 2.4E-4 score: 30.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 735..750 e-value: 3.0E-6 score: 27.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 736..751 score: 10.674652
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 135..341 e-value: 5.8E-60 score: 215.2
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 147..324 score: 31.842232
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 140..313 e-value: 1.2E-47 score: 162.0
None	No IPR available	GENE3D	4.10.60.10		coord: 721..752 e-value: 6.1E-6 score: 27.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 637..730
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 658..695
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 696..710
None	No IPR available	PANTHER	PTHR47959:SF12	SUBFAMILY NOT NAMED	coord: 26..747
None	No IPR available	PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	coord: 26..747
None	No IPR available	CDD	cd12938	GUCT_Hera	coord: 552..632 e-value: 4.0365E-21 score: 85.8127
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 338..467 e-value: 7.36189E-54 score: 180.011
None	No IPR available	CDD	cd00268	DEADc	coord: 127..325 e-value: 8.28353E-95 score: 291.268
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 339..530 e-value: 1.4E-51 score: 177.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 117..328 e-value: 1.8E-75 score: 254.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 194..479
IPR012562	GUCT	PFAM	PF08152	GUCT	coord: 545..645 e-value: 2.8E-17 score: 62.8
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 721..751

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000120.1	Lcy03g000120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding