Lcy02g007850.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy02g007850.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 11223034 .. 11223272 (+)
Sequence length186
RNA-Seq ExpressionLcy02g007850.1
SyntenyLcy02g007850.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTACTATCGGGTCGGGTGAATTCAATAATAGACGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

mRNA sequence

ATGGGGTACTATCGGGTCGGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Coding sequence (CDS)

ATGGGGTACTATCGGGTCGGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Protein sequence

MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPST
Homology
[Close]
BLAST of Lcy02g007850.1 vs. ExPASy TrEMBL
Match: A0A0A0LBC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.4e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS 60
          MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS
Sbjct: 1  MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]
BLAST of Lcy02g007850.1 vs. ExPASy TrEMBL
Match: A0A6C0UA12 (Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 11 KENPVFLGREYLNRTNRPV---VCFGTKQLELGSLNWNVYYPYRGSF 55
          +EN V +GREYLNRTN PV   VCF TKQLELGS+NWNVYYPYRG F
Sbjct: 41 RENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRGIF 87

[Close]
BLAST of Lcy02g007850.1 vs. ExPASy TrEMBL
Match: C0LEB8 (ORF126 OS=Jatropha curcas OX=180498 GN=ORF126 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 37
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 96  AYPKENPVLLGREYLNRTNRPVDIFASEQ 124

[Close]
BLAST of Lcy02g007850.1 vs. NCBI nr
Match: QIB71948.1 (hypothetical protein [Fagonia indica])

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 11 KENPVFLGREYLNRTNRPV---VCFGTKQLELGSLNWNVYYPYRGSF 55
          +EN V +GREYLNRTN PV   VCF TKQLELGS+NWNVYYPYRG F
Sbjct: 41 RENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRGIF 87

[Close]
BLAST of Lcy02g007850.1 vs. NCBI nr
Match: YP_002720156.1 (ORF126 [Jatropha curcas] >YP_002720173.1 ORF126 [Jatropha curcas] >ACN72735.1 ORF126 [Jatropha curcas] >ACN72751.1 ORF126 [Jatropha curcas])

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 37
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 96  AYPKENPVLLGREYLNRTNRPVDIFASEQ 124

[Close]
BLAST of Lcy02g007850.1 vs. NCBI nr
Match: KAG6735404.1 (hypothetical protein POTOM_062051 [Populus tomentosa])

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 37
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 492 AYPKENPVLLGREYLNRTNRPVDIFASEQ 520

The following BLAST results are available for this feature:
BLAST of Lcy02g007850.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g007850.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBC96.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1[more]
A0A6C0UA123.5e-1276.60Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1[more]
C0LEB82.7e-0479.31ORF126 OS=Jatropha curcas OX=180498 GN=ORF126 PE=4 SV=1[more]
BLAST of Lcy02g007850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
QIB71948.17.3e-1276.60hypothetical protein [Fagonia indica][more]
YP_002720156.15.6e-0479.31ORF126 [Jatropha curcas] >YP_002720173.1 ORF126 [Jatropha curcas] >ACN72735.1 OR... [more]
KAG6735404.15.6e-0479.31hypothetical protein POTOM_062051 [Populus tomentosa][more]
BLAST of Lcy02g007850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy02g007850Lcy02g007850gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g007850.1.exon1Lcy02g007850.1.exon1exon
Lcy02g007850.1.exon2Lcy02g007850.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g007850.1.cds1Lcy02g007850.1.cds1CDS
Lcy02g007850.1.cds2Lcy02g007850.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy02g007850.1Lcy02g007850.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast