Lcy02g007700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DUF4371 domain-containing protein
Location	Chr02: 11150699 .. 11151099 (+)
RNA-Seq Expression	Lcy02g007700
Synteny	Lcy02g007700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTACGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGA

mRNA sequence

ATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGA

Coding sequence (CDS)

ATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGA

Protein sequence

MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ

Homology

[Close]

BLAST of Lcy02g007700 vs. ExPASy TrEMBL
Match: A0A2N9HP93 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 56
          MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG
Sbjct: 43 MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 97

[Close]

BLAST of Lcy02g007700 vs. ExPASy TrEMBL
Match: A0A2N9HJI4 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39743 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 56
           MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG
Sbjct: 121 MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 175

[Close]

BLAST of Lcy02g007700 vs. ExPASy TrEMBL
Match: A0A2N9ID32 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49693 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 56
          MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG
Sbjct: 43 MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 97

[Close]

BLAST of Lcy02g007700 vs. ExPASy TrEMBL
Match: A0A5N5IXQ9 (Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 56
           MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRK DGAMPRG
Sbjct: 66  MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKLDGAMPRG 120

[Close]

BLAST of Lcy02g007700 vs. ExPASy TrEMBL
Match: A0A6A5L6V7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033125 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 29  HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ 72
           HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTG ELLFPEKKQ
Sbjct: 92  HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGHELLFPEKKQ 134

[Close]

BLAST of Lcy02g007700 vs. NCBI nr
Match: KAB5511226.1 (hypothetical protein DKX38_030151 [Salix brachista])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRG 56
           MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRK DGAMPRG
Sbjct: 66  MNAGGMLNTCKSDGKWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKLDGAMPRG 120

[Close]

BLAST of Lcy02g007700 vs. NCBI nr
Match: KAF1855283.1 (hypothetical protein Lal_00044982 [Lupinus albus] >KAF1855285.1 hypothetical protein Lal_00044984 [Lupinus albus] >KAF1876837.1 hypothetical protein Lal_00033125 [Lupinus albus])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 29  HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ 72
           HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTG ELLFPEKKQ
Sbjct: 92  HGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGHELLFPEKKQ 134

[Close]

BLAST of Lcy02g007700 vs. NCBI nr
Match: ONM52329.1 (hypothetical protein ZEAMMB73_Zm00001d019137 [Zea mays])

HSP 1 Score: 93.6 bits (231), Expect = 7.4e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 25  LGLRHGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ 72
           LGLRHGPDSYGRQQWGIFRNG KPDG MPRGG RPTGR+LLF EKKQ
Sbjct: 108 LGLRHGPDSYGRQQWGIFRNGGKPDGVMPRGGGRPTGRQLLFSEKKQ 154

[Close]

BLAST of Lcy02g007700 vs. NCBI nr
Match: KAB5511300.1 (hypothetical protein DKX38_030095 [Salix brachista])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 20  WRTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ 72
           W    + LRHGPDSYGRQQWGIFRNGRK DGAMPRGG   TGRELLFPEKKQ
Sbjct: 279 WSFRMITLRHGPDSYGRQQWGIFRNGRKLDGAMPRGG---TGRELLFPEKKQ 327

[Close]

BLAST of Lcy02g007700 vs. NCBI nr
Match: KMT05967.1 (hypothetical protein BVRB_7g164560 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 21 RTATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRGGRRPTGRELLFPEKKQ 72
          RT    L   PDSYGRQQWGIFRNGRKPDGAM RGGRRPTG ELLFPEK +
Sbjct: 11 RTCCAPLFSNPDSYGRQQWGIFRNGRKPDGAMQRGGRRPTGHELLFPEKNK 61

The following BLAST results are available for this feature:

BLAST of Lcy02g007700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g007700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HP93	1.3e-26	100.00	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3...	[more]
A0A2N9HJI4	1.3e-26	100.00	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39743 PE=3...	[more]
A0A2N9ID32	1.3e-26	100.00	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49693 PE=3...	[more]
A0A5N5IXQ9	1.9e-25	98.18	Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3...	[more]
A0A6A5L6V7	1.2e-16	97.67	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033125 PE=4 SV=1	[more]

BLAST of Lcy02g007700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5511226.1	3.9e-25	98.18	hypothetical protein DKX38_030151 [Salix brachista]	[more]
KAF1855283.1	2.5e-16	97.67	hypothetical protein Lal_00044982 [Lupinus albus] >KAF1855285.1 hypothetical pro...	[more]
ONM52329.1	7.4e-16	89.36	hypothetical protein ZEAMMB73_Zm00001d019137 [Zea mays]	[more]
KAB5511300.1	3.1e-14	80.77	hypothetical protein DKX38_030095 [Salix brachista]	[more]
KMT05967.1	1.2e-13	78.43	hypothetical protein BVRB_7g164560 [Beta vulgaris subsp. vulgaris]	[more]

BLAST of Lcy02g007700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007700.1	Lcy02g007700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion