Lcy02g005490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g005490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr02: 7211066 .. 7212550 (-)
RNA-Seq Expression	Lcy02g005490
Synteny	Lcy02g005490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTACTGACCATATTTTGTTTAACTGTTCTCGTGCAAGGAAAATCTGGAGAATTATTGCAAGGAGAGCATACTTGGAGATAGATTTCAACAACAGCTTTGTGGATAGTTGGATCAAGATCAATGCAAACTCATCAAAGGAGGATATCGAAGTGATGGTGACAGCTTGCTGGGCTATATGGAACGATTGGAACAAGAAGATCCATGGAGAAGAAATCCCATCAGAAATCGTTCGAGGCAATTGGATAATTAAATACTTGGATGAGTATCGGAAAGCTAACCTAAAGCAAACTCCGAAGGAAGATATTTCTCTGGAAATGATCAATCTGGGCGAAGCCTCGAATCCCTCAAATTGGACGGATGAATTTTTGCATGTAAACGTTGATGCGACTTGGACATCAAATCCTCCAGCAACAAAGTTTGGAGCTGTTATAGGTAATTTTGTACCATTCCGATGTACAAGGAGCTGACGAGAACAACCCGATGCGAGCCCAGAAATAGGACCGAAGGATGGACCCTGGAGGCGAAACGGGCCAAGGGGTCGGGCTTTTGGCCCGACCCTCGGCCCGCCTGCCTGGGCTGAGTTCCTCCGACTTCGTTCGGTCCCTGCAGCCTCTAGCCGCCCCGGTTCCGCTTGGTTCGTCCCGAAACGCCTTCGAAGTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTAAACCCCTCTTCGCCTCTGAAGAAGGGATCCCGAAACTCATTCTCTAAACCCTACACTCTCTCTTGCTCTCTTGCTCTGCTACTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTTCTGTCTCGCAGGTCACGTCTTCCCCCCTCTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTCCTCCTTGTCAAATTTGACCATCAACAGGAGCTATCTGCAGAGATCAAAGAGGAGAAATTAAAGGAGCTTCAACAATGTATGAGGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTTGATTTGACCATCAACAGGAGCTATCTGCAGAGATCAAAGAGGAGAAATCAGAGGAGCTTCAACAATGTATCAGGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTCGAAGGCTTGAGCTTGGCAAAGAAATGTGGTGGTGGGAAAATCATAATAAAATCTGATTGTAAACAAGCGGTGAACTTTGTGTCAAAACTTTCAGATCCCTGGAGTGACGTGGAAGCCATTGTCGAAGAGATATGGGATATGGAGAAAGACTTTGAGGTGGTGATTTACAATTTTATCCCTAGAAAGGAAAATAGAGTAGCTGACTTTATTGCCAAAGAAGCAAAATGTAATGGCTTAAATGAGAGCTGGACTCACATCATCCATGAGTGGATTGTGTTTGTGGTCGAGAATGACCAAACATTTTCTGCCCACGTGGCGTAA

mRNA sequence

ATGGAAACTACTGACCATATTTTGTTTAACTGTTCTCGTGCAAGGAAAATCTGGAGAATTATTGCAAGGAGAGCATACTTGGAGATAGATTTCAACAACAGCTTTGTGGATAGTTGGATCAAGATCAATGCAAACTCATCAAAGGAGGATATCGAAGTGATGGTGACAGCTTGCTGGGCTATATGGAACGATTGGAACAAGAAGATCCATGGAGAAGAAATCCCATCAGAAATCGTTCGAGGCAATTGGATAATTAAATACTTGGATGAGTATCGGAAAGCTAACCTAAAGCAAACTCCGAAGGAAGATATTTCTCTGGAAATGATCAATCTGGGCGAAGCCTCGAATCCCTCAAATTGGACGGATGAATTTTTGCATGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTCGAAGGCTTGAGCTTGGCAAAGAAATGTGGTGGTGGGAAAATCATAATAAAATCTGATTGTAAACAAGCGGTGAACTTTGTGTCAAAACTTTCAGATCCCTGGAGTGACGTGGAAGCCATTGTCGAAGAGATATGGGATATGGAGAAAGACTTTGAGGTGGTGATTTACAATTTTATCCCTAGAAAGGAAAATAGAGTAGCTGACTTTATTGCCAAAGAAGCAAAATGTAATGGCTTAAATGAGAGCTGGACTCACATCATCCATGAGTGGATTGTGTTTGTGGTCGAGAATGACCAAACATTTTCTGCCCACGTGGCGTAA

Coding sequence (CDS)

ATGGAAACTACTGACCATATTTTGTTTAACTGTTCTCGTGCAAGGAAAATCTGGAGAATTATTGCAAGGAGAGCATACTTGGAGATAGATTTCAACAACAGCTTTGTGGATAGTTGGATCAAGATCAATGCAAACTCATCAAAGGAGGATATCGAAGTGATGGTGACAGCTTGCTGGGCTATATGGAACGATTGGAACAAGAAGATCCATGGAGAAGAAATCCCATCAGAAATCGTTCGAGGCAATTGGATAATTAAATACTTGGATGAGTATCGGAAAGCTAACCTAAAGCAAACTCCGAAGGAAGATATTTCTCTGGAAATGATCAATCTGGGCGAAGCCTCGAATCCCTCAAATTGGACGGATGAATTTTTGCATGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTCGAAGGCTTGAGCTTGGCAAAGAAATGTGGTGGTGGGAAAATCATAATAAAATCTGATTGTAAACAAGCGGTGAACTTTGTGTCAAAACTTTCAGATCCCTGGAGTGACGTGGAAGCCATTGTCGAAGAGATATGGGATATGGAGAAAGACTTTGAGGTGGTGATTTACAATTTTATCCCTAGAAAGGAAAATAGAGTAGCTGACTTTATTGCCAAAGAAGCAAAATGTAATGGCTTAAATGAGAGCTGGACTCACATCATCCATGAGTGGATTGTGTTTGTGGTCGAGAATGACCAAACATTTTCTGCCCACGTGGCGTAA

Protein sequence

METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTPKEDISLEMINLGEASNPSNWTDEFLHDIDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHIIHEWIVFVVENDQTFSAHVA

Homology

[Close]

BLAST of Lcy02g005490 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1   METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWA 60
           +ETTDH LF C RA+++W I+  +A+ + DFNNS  D  + +  + S  D +++    WA
Sbjct: 35  IETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWA 94

Query: 61  IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR 93
           IWND N      +IP   +R +WI+ Y+ +++
Sbjct: 95  IWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ 126

[Close]

BLAST of Lcy02g005490 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 63/279 (22.58%), Postives = 111/279 (39.78%), Query Frame = 0


Query: 2    ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWA 61
            E+  H  F+C RAR+IWR +      L  + N SF++ W  +      +D+ +     W 
Sbjct: 1181 ESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWG 1240

Query: 62   IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ----------------TPKEDI 121
            IWND N  IHG+++     +  W+  +LD + +A +                   P   +
Sbjct: 1241 IWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSV 1300

Query: 122  SLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKC 181
            SL++         S      + D                 +  +A+++ ILEGL  A   
Sbjct: 1301 SLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAAS 1360

Query: 182  GGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADF 241
                + ++SD   A+  +        D +  V EI  +   F  + ++   R+ NR A  
Sbjct: 1361 NFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHG 1420

Query: 242  IAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA 248
            +AK    +     +W      W++ +V+ D  +  AHVA
Sbjct: 1421 LAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFAHVA 1459

[Close]

BLAST of Lcy02g005490 vs. ExPASy TrEMBL
Match: A0A5C7IQ65 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000112 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 57/230 (24.78%), Postives = 99/230 (43.04%), Query Frame = 0


Query: 2   ETTDHILFNCSRARKIWRIIARRAYLEIDFNN-SFVDSWIKINANSSKEDIEVMVTACWA 61
           ET+ H L+ CS  +++ R +   A  +   +N  F++  I  ++    ++ E++    W 
Sbjct: 15  ETSLHALWRCSSLKEL-RCVCNFAAGDASLDNVPFIEFVISCSSQLVLKEFELLCIIWWR 74

Query: 62  IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTPKEDISLEMINLGEASNPSNW 121
           +W+  NK +H   I       +W   ++ +YR AN +Q          +   E   P  W
Sbjct: 75  VWHRRNKAVHNNNILPAAEIYDWGCNFITDYRGANERQ---------YVQKVEVLRPPRW 134

Query: 122 TDEFLHDIDFNA-----------------PIAKMKAILEGLSLAKKCGGGKIIIKSDCKQ 181
                  +  N                  PIA+  AILEGL  A      K+ ++SD   
Sbjct: 135 LAPPFGSVKINTDAALNFQLKVAGFGNKPPIAEALAILEGLRFAFSRNFSKVCLESDALC 194

Query: 182 AVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAK 214
            V  ++  S P S+V  ++ +I+ +   F  V + F+PR  N+VA  +AK
Sbjct: 195 VVQAINNKSPPSSEVGVVLNDIFLVLDRFSEVSFAFVPRLGNKVAHGLAK 234

[Close]

BLAST of Lcy02g005490 vs. ExPASy TrEMBL
Match: A0A6P6S611 (uncharacterized protein LOC113687483 OS=Coffea arabica OX=13443 GN=LOC113687483 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 60/268 (22.39%), Postives = 111/268 (41.42%), Query Frame = 0


Query: 1   METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKIN----ANSSKEDIEVMVT 60
           MET +H+ F C +A + W++   R    +    +F   W ++      N  +E + + + 
Sbjct: 574 METIEHLFFFCDKAVEAWKLAPVRWDGLMGMQYNFWLWWEQVTQSLALNQGQERVSLTIN 633

Query: 61  ACWAIWNDWNKKIHGE--EIPSEIVR---GNWI----IKYLDEY---------------- 120
             W IW   NK    +  + P  IVR     W+    ++  D+                 
Sbjct: 634 ILWQIWKARNKNFFEKVNQDPVRIVRKAQDEWLEFEQVRNTDQMESTGKMNDALPTRRVR 693

Query: 121 -RKANLKQTPKEDISLEMINLGEASNPSNWTDEFLHDIDF------NAPIAKMKAILEGL 180
            RK  ++      IS + +  G+     NW  + L           +A   + +A+   L
Sbjct: 694 TRKEEIRLYTDATISAKRVRTGQGIIARNWKGQLLKAKGIVTQGKGSASEVEARAVRNAL 753

Query: 181 SLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKE 233
            +A + G  KII+ +DCK  V  ++K  +      AI+E++ ++   FE   + FIPR E
Sbjct: 754 LMATQAGWTKIIVHTDCKSVVEHITKRKEFDYTTAAILEDVQELSLAFEKCSFVFIPRTE 813

[Close]

BLAST of Lcy02g005490 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 51/196 (26.02%), Postives = 96/196 (48.98%), Query Frame = 0


Query: 45  NSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR------------ 104
           N S  ++ +    CWA+WND +  I+ ++IP  +++  WI+KY +E R            
Sbjct: 3   NLSTSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIP 62

Query: 105 KANLKQTPKEDISLEMINLGEASNPSNWTDEFLHD---------IDFNAP----IAKMKA 164
           + N  + P   + ++M      S   +     L +         +DF+      +AK+ A
Sbjct: 63  RVNEWRPPLGGV-VKMNTDAAVSEEGSGVGVLLREGNAEIVGAMVDFHMVKTPLLAKILA 122

Query: 165 ILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPW-SDVEAIVEEIWDMEKDFEVVIYN 215
           I EGLSLA + G  ++++++D  +A+N +   S PW  +  + VE+I    +DF+ + + 
Sbjct: 123 IREGLSLATRLGVHRVVVETDSLEALNLIGDKS-PWKGEAVSWVEDIRAFARDFQEICFQ 182

[Close]

BLAST of Lcy02g005490 vs. NCBI nr
Match: XP_006471930.1 (uncharacterized protein LOC102617744 [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 66/263 (25.10%), Postives = 103/263 (39.16%), Query Frame = 0


Query: 1   METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWA 60
           +ET  H LF C  ARK W +      L+             + +NS + + E+M+  CWA
Sbjct: 24  VETISHALFECKAARKTWNLAPSTFELQNVPGQDIFSYAQNLCSNSRRNEAELMIMYCWA 83

Query: 61  IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQT-----------------PKED 120
           IW   NK I   +    IV        L+ Y++     T                 P   
Sbjct: 84  IWFARNKLIFERKKIEPIVSAAKAESMLEAYQRVRKTGTLHISNTREESQQRWSPPPTNV 143

Query: 121 ISL----------EMINLGEASNPSNW--------TDEFLHDIDFNAPIAKMKAILEGLS 180
           + L          + + LG     SN            F  D+ F    A+ +AI  GL 
Sbjct: 144 LKLNVDAATNSKDQKVGLGAVLRDSNGRVVAAGIKQASFRKDVSF----AEAEAIQWGLQ 203

Query: 181 LAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKEN 229
           +AKK     +I+++DCK     V+      S++  I+ EI   +++F+ + +NF+PR  N
Sbjct: 204 IAKKAAAASLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKREFQRIHFNFVPRFCN 263

[Close]

BLAST of Lcy02g005490 vs. NCBI nr
Match: XP_030931239.1 (uncharacterized protein LOC115957159 [Quercus lobata])

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-12
Identity = 65/270 (24.07%), Postives = 111/270 (41.11%), Query Frame = 0


Query: 2   ETTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVD-SWIKINANS-SKEDIEVMVTACW 61
           ETT H+L+ C  A+++W  +       +D    F+D  W   N    S+EDI +MV   W
Sbjct: 20  ETTGHVLWQCHHAKEVWNEVGLAKDHVMDSCPEFLDLLWYGCNFKKWSEEDIGLMVMTAW 79

Query: 62  AIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTPKEDISLEMINLGE----AS 121
            IW +WN+  HG       +R  W   YL++Y  AN +  P  +    +  L +     +
Sbjct: 80  GIWTNWNEVRHGRSRKPATIRARWTKNYLEQYLTANHEVQPYRESVEAVWQLPKPPWYKA 139

Query: 122 NPSNWTDEFLHDIDF-------------------NAPIAKM----KAILEGLSLAKKCGG 181
           N  + T E   ++                      AP+  +    KA+ E +  A   G 
Sbjct: 140 NMDSATFEQQKEVGIEVVIRDHHGVVVAALSKKSTAPLGALEMEAKAMEEAVEFAWNMGI 199

Query: 182 GKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIA 241
              + +SD +  +N +  L++  S +  I+  +      F  V ++ +P   N+VA  +A
Sbjct: 200 RDCVFESDAQIVMNAMLHLTELPSSIANIIAGVVSHLHRFRSVQFSHVPCTGNKVAHTLA 259

Query: 242 KEAKCNGLNESWTHIIHEWIVFVVENDQTF 243
           + A+      +W       I  +V  D TF
Sbjct: 260 QYARGVSSLHAWVEETPSCIENLVTQDVTF 289

[Close]

BLAST of Lcy02g005490 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-12
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1   METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWA 60
           +ETTDH LF C RA+++W I+  +A+ + DFNNS  D  + +  + S  D +++    WA
Sbjct: 35  IETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWA 94

Query: 61  IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR 93
           IWND N      +IP   +R +WI+ Y+ +++
Sbjct: 95  IWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ 126

[Close]

BLAST of Lcy02g005490 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-12
Identity = 63/279 (22.58%), Postives = 111/279 (39.78%), Query Frame = 0


Query: 2    ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWA 61
            E+  H  F+C RAR+IWR +      L  + N SF++ W  +      +D+ +     W 
Sbjct: 1181 ESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWG 1240

Query: 62   IWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ----------------TPKEDI 121
            IWND N  IHG+++     +  W+  +LD + +A +                   P   +
Sbjct: 1241 IWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSV 1300

Query: 122  SLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKC 181
            SL++         S      + D                 +  +A+++ ILEGL  A   
Sbjct: 1301 SLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAAS 1360

Query: 182  GGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADF 241
                + ++SD   A+  +        D +  V EI  +   F  + ++   R+ NR A  
Sbjct: 1361 NFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHG 1420

Query: 242  IAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA 248
            +AK    +     +W      W++ +V+ D  +  AHVA
Sbjct: 1421 LAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFAHVA 1459

[Close]

BLAST of Lcy02g005490 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-12
Identity = 48/199 (24.12%), Postives = 86/199 (43.22%), Query Frame = 0


Query: 1   METTDHILFNCSRARKIWRIIARRAYLE-IDFNNSFVDSWIKINANSSKEDIEVMVTACW 60
           ME T H +  C RA+KIW ++    +   I+ N SF+D W+ +    + +  ++     W
Sbjct: 1   MEXTSHXIXLCKRAKKIWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXW 60

Query: 61  AIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKA----------------NLKQTPKED 120
           AIW D N   HG  + +  +R NWI  Y   Y +A                + +  P  D
Sbjct: 61  AIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD 120

Query: 121 ISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKK 169
            ++++ +     + S      + D              +  N   A+++ ILE L LA  
Sbjct: 121 SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAAS 180

[Close]

BLAST of Lcy02g005490 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 134 IAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFE 193
           +A+  A+   L  A+  G  K+ + SD +Q +  ++  S P ++   I+ +I ++   F 
Sbjct: 75  MAEAIALFLALQYAQSIGITKLSMASDSQQLITAITSES-PSTEFYGIIFDILNLSLGFA 134

Query: 194 VVIYNFIPRKENRVADFIAKEA 216
            V ++F+PR ENRVAD +AK +
Sbjct: 135 DVSFSFVPRSENRVADELAKSS 155

The following BLAST results are available for this feature:

BLAST of Lcy02g005490 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g005490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTE3	1.3e-12	36.96	uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DX30	2.2e-12	22.58	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5C7IQ65	2.4e-11	24.78	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000112 ...	[more]
A0A6P6S611	5.4e-11	22.39	uncharacterized protein LOC113687483 OS=Coffea arabica OX=13443 GN=LOC113687483 ...	[more]
A0A6J1DZK3	5.4e-11	26.02	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Lcy02g005490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006471930.1	1.1e-13	25.10	uncharacterized protein LOC102617744 [Citrus sinensis]	[more]
XP_030931239.1	2.7e-12	24.07	uncharacterized protein LOC115957159 [Quercus lobata]	[more]
XP_022145060.1	2.7e-12	36.96	uncharacterized protein LOC111014578 [Momordica charantia]	[more]
XP_022158377.1	4.5e-12	22.58	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022131661.1	7.8e-12	24.12	uncharacterized protein LOC111004786 [Momordica charantia]	[more]

BLAST of Lcy02g005490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09490.1	5.7e-05	31.71	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 133..215 e-value: 3.9E-16 score: 59.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 118..219 e-value: 1.7E-11 score: 46.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 135..213 e-value: 9.37296E-17 score: 71.9616
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 133..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g005490.1	Lcy02g005490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity