Lcy02g002960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g002960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U1 small nuclear ribonucleoprotein A
Location	Chr02: 3995249 .. 3998724 (-)
RNA-Seq Expression	Lcy02g002960
Synteny	Lcy02g002960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGGACCGACCAGACCTCTGCGAGCGGAGTGACATTGCATGTATCGGACCGAGCCGTCGTTGCTTTCTCTCTACCTTCGTCGCTTCGTCGTTTGAGCCCTTCTTTTTGGCGGTCAGAGTTGGAAGAAATGGCGGAGGTCAACAGCTCTGGCAACGAAGTTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTACTCGTAGAGCGTGAGGGGAGGGGAAGCTTCTTTAATGATTTGAAATGTGTTGTGATTTTTGATTGTTTACTCCTTGGTGATAGCAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGCTGGCTTTCAAGACCCTGAAGCACAAGGGACAGGCTTGGGTTGTCTTCGAAGAAGTTTCTTCCGCCACTAATGCGCTTAGACAGATGCAGGGCTTTCCTTTCTATGATAAGCCAATGGTAATGTGCTTACTAGCCTTTCCAATACGAGAATTTTGATTTCGTTTGTTAAATTCGAGGTTGAGATGAAGACTAGACTTAGGAAGTCTTGCTGTAAAAAGATGGTTATCGTTCGTATGGACACTTATAGTAATAAGAGTCATAGTAGTGAATAAGAAAGTGCTGATGGATTCTTCTGAACAACGAAACGAGATCGTGTTTGGATTATATTGCGTCTTAGGCAGTTTAGATTTACTCACTCATGACTGGTAAATAAAAACGACTGCTTTCAGATAATTGGCAGACTGATGATGTGACCTTCAATGAATATTCATAGCCGATTTCGTTTTGGCAAGGTTAAAGAACAATTAATGTTTGAATGAGAATGATCGAGCATGAAACAGAATATGCCCCGAGCATGAAATACAATTATTTCTTAAATATATCACACTACAGACGTTTAAATTTACTCCACCTGAGCTTCACGACATTGGTTCTTAATATTTTGACACATCAACTAGTTGTTAAACGTGGCTTCTGCAAATCTTGCGAAAGTTCTATATCTGTTGAGCGTTTCTTGTTTGTAGATCTGGTGGCTAATATCCATATTCTCTTTGCATTTTTGAAACTGTGTTGCTGGCTTTATATATTTTGCCATAGTATGAAGTGCAAGCAATTTTATATATCATTTGTTGCTCTGTTCTATTATTCGCCTTTCATTAGCTTGATAAAGTTTTTTTCGGGGGTATGGTTTAATACGAAGCTAAGCGCTGTTTCTTTACAATCATGCAGAGGATACAATATGCAAAGACAAAATCAGATATAATCGCAAAGTCTGATGGCACATTTGTTCCCCGTGAGAAGCGAAAGAGGCATGAGGAGAAGGGTATAATTTGTCTTTATTTTCTTTTTGTCAATTGAAATTCAAATATGTTTGAATAGAGGTACATGAAGATTTTACTGCAGTATTTGATCCGAGAGTGTTCTAATTTTCACTCTATTTTGTTTTATGTGTTATTGGTGTCAATATGAAACAATGCTTTATTAGCTTTTGCTTCTTTTATTTTCCTTTGCATACTGCATAAGAGTAATGTTCAATTTCTCGAAAAGTAAATGTCAAAAAGTAGTTGTATTATAATGTATGTATTTTCTTCAAAGCTATTAGAGCAGGATCCACATGTTAGGGAAGTAATTTTTTCAGAAAATGTCATTCTATTATTTATGTAGCAGTGTTTTGATCAAGATCTGTCCATTCTCTTGATGTGGTAGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGGTGAGTATCACTATTTAACTCCTAAACCTTAGTCTTTGATAATTCAAAGAATTTGATTTCTGAGCCTTACCATATCTTGATTCTGTAATCTCTAACGAAGTCATTAAGATATTATGAGTTCATCTTTGTTGCTAAAATAATGTATTCTAAGTTCTTCATTGACACGATTGTAATTAAATCTATTAAAAATGATGCTCAATCATCCTTTCTCATTTCTCACTCTTTTAACTATATTAAGAATGATCCTTAATTTGTATGTTATATCATGAAATTAGAACTAGAAGCACTTCATTCTTTTACTCCCTCTTGAACGAGATTCAGTTCTCATTTTTTTGTTATTCTTTTGGATTTTATCCACCTTTCTATTTGTCTATCCACAGAGAGAGATATATAGAAAACGAAGAAACGTGTTTTGGTGTTATTTGCATTTATTGCTTTGGTCATTTCATATATCTTGATTGTTAAGAACCCTGTGTCAATTGATTTAACGTTCTAATTTCTGGAACTTGGTGGGTGGTGTCTGTATGAGTGGTTGTATTCTTGTATGCCTTTTATCTATTGACCAGATCATTTTATGGCAGCAAAACTTTGTTGGCTTTCATCATATTAATAATTTTGGTGCTTTTTTTTTTTGAAAACGGTACTTAGTTCCATTTATTTTCCGGACACTATACGTTGCTAACACTCACTCTCTTTTCCTTTCCCCCTTCTGAAAATGGTGCAGCACTCACAAGTACCTTATCCAGGCGGAGTTATGGTGCCAGAAGCCCCTGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGGTGATGAGGTACAATCGACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAAAGAATGTTGGTCTTCACTCTATGGAAAGCCACCTATTATTCGATGCTCAGTACAGAAGATTGTTTGTAAAATACTGTCATCTCGTACTTGCTGGAAATTCTTCTCTGCCATGACCTAATTGATAAAATCAGATCAGTTCTCTTAACCAGGAATGGAACAGATCTCAGATCCCGTAAATGCAGCGGTTGCCATGATTATCCTCGAACTCGTAGTAAAGTTTGATTTTCATCATCACATTTTGTTCTCATTTCATAGTAGTATTTCCTTCTAGTTGTACTATAAAATAGACTAAAAGCTTTTATAACCAAGAGATTGAAGAGCTGATGATGTTGAAATCTAATTTGCTAGAGACTTTATCTTACTGAACAGCAAGTTCTACAGGATATAACAGTTCCACAAAGCAAGCATAACGAGCTGCAGCTGAAGTGTTGAGGGAGATAGACATCCAGTAAGTACATCTTAATTCTTGAACTGAATTTTGTCGAACATGTCGACTACTCCTGCTTAGATGTAGCAGAATTTTACTTGTACAACATAGCGAATTCGAGATCCGAGACCGAGAGTTGGCTGGAAGGAAAAGGTTTGTTAAAATTAGATAGTTTTCATGTCGAAGTTGAACAAAAGTTGATAACATGTACTGGAAGCT

mRNA sequence

TGGCGGACCGACCAGACCTCTGCGAGCGGAGTGACATTGCATGTATCGGACCGAGCCGTCGTTGCTTTCTCTCTACCTTCGTCGCTTCGTCGTTTGAGCCCTTCTTTTTGGCGGTCAGAGTTGGAAGAAATGGCGGAGGTCAACAGCTCTGGCAACGAAGTTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGCTGGCTTTCAAGACCCTGAAGCACAAGGGACAGGCTTGGGTTGTCTTCGAAGAAGTTTCTTCCGCCACTAATGCGCTTAGACAGATGCAGGGCTTTCCTTTCTATGATAAGCCAATGAGGATACAATATGCAAAGACAAAATCAGATATAATCGCAAAGTCTGATGGCACATTTGTTCCCCGTGAGAAGCGAAAGAGGCATGAGGAGAAGGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGCACTCACAAGTACCTTATCCAGGCGGAGTTATGGTGCCAGAAGCCCCTGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGGTGATGAGGTACAATCGACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAAAGAATGTTGGTCTTCACTCTATGGAAAGCCACCTATTATTCGATGCTCAGTACAGAAGATTGTTTGTAAAATACTGTCATCTCGTACTTGCTGGAAATTCTTCTCTGCCATGACCTAATTGATAAAATCAGATCAGTTCTCTTAACCAGGAATGGAACAGATCTCAGATCCCGTAAATGCAGCGGTTGCCATGATTATCCTCGAACTCGTAGTAAAGTTTGATTTTCATCATCACATTTTGTTCTCATTTCATAGTAGTATTTCCTTCTAGTTGTACTATAAAATAGACTAAAAGCTTTTATAACCAAGAGATTGAAGAGCTGATGATGTTGAAATCTAATTTGCTAGAGACTTTATCTTACTGAACAGCAAGTTCTACAGGATATAACAGTTCCACAAAGCAAGCATAACGAGCTGCAGCTGAAGTGTTGAGGGAGATAGACATCCAGTAAGTACATCTTAATTCTTGAACTGAATTTTGTCGAACATGTCGACTACTCCTGCTTAGATGTAGCAGAATTTTACTTGTACAACATAGCGAATTCGAGATCCGAGACCGAGAGTTGGCTGGAAGGAAAAGGTTTGTTAAAATTAGATAGTTTTCATGTCGAAGTTGAACAAAAGTTGATAACATGTACTGGAAGCT

Coding sequence (CDS)

ATGGCGGAGGTCAACAGCTCTGGCAACGAAGTTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGCTGGCTTTCAAGACCCTGAAGCACAAGGGACAGGCTTGGGTTGTCTTCGAAGAAGTTTCTTCCGCCACTAATGCGCTTAGACAGATGCAGGGCTTTCCTTTCTATGATAAGCCAATGAGGATACAATATGCAAAGACAAAATCAGATATAATCGCAAAGTCTGATGGCACATTTGTTCCCCGTGAGAAGCGAAAGAGGCATGAGGAGAAGGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGCACTCACAAGTACCTTATCCAGGCGGAGTTATGGTGCCAGAAGCCCCTGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGGTGATGAGGTACAATCGACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAG

Protein sequence

MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK

Homology

[Close]

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.7e-97
Identity = 185/249 (74.30%), Postives = 209/249 (83.94%), Query Frame = 0


Query: 1   MAEVN-SSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDANQAGMGLNPAFAGAYGATAH-SQVPYPGGVM--VPEAPAPPNSILFVQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.0e-92
Identity = 179/239 (74.90%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYPGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.0e-92
Identity = 179/239 (74.90%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYPGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.1e-73
Identity = 139/233 (59.66%), Postives = 185/233 (79.40%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP P      +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-71
Identity = 136/233 (58.37%), Postives = 179/233 (76.82%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129
Identity = 238/242 (98.35%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129
Identity = 238/242 (98.35%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.1e-128
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNS+GNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL
Match: A0A6J1GA71 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111452325 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.1e-128
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNS+GNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.3e-128
Identity = 236/242 (97.52%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 472.6 bits (1215), Expect = 2.0e-129
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNS+GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGAT HSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATVHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 470.7 bits (1210), Expect = 7.6e-129
Identity = 238/242 (98.35%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 467.2 bits (1201), Expect = 8.4e-128
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNS+GNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 236/242 (97.52%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Lcy02g002960 vs. NCBI nr
Match: KAA0044384.1 (U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MAEVNSSGNEVPPNMTIYINNLNEKIKLE-ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           MAEV ++GNEVPPNMTIYINNLNEKIKLE ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEAELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG
Sbjct: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120

Query: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHET 180
           RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPY GGVMVPEAPAPPNSILFVQNLPHET
Sbjct: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180

Query: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240
           TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY
Sbjct: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240

Query: 241 AKK 243
           AKK
Sbjct: 241 AKK 243

[Close]

BLAST of Lcy02g002960 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 356.3 bits (913), Expect = 1.9e-98
Identity = 185/249 (74.30%), Postives = 209/249 (83.94%), Query Frame = 0


Query: 1   MAEVN-SSGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDANQAGMGLNPAFAGAYGATAH-SQVPYPGGVM--VPEAPAPPNSILFVQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]

BLAST of Lcy02g002960 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 276.9 bits (707), Expect = 1.5e-74
Identity = 139/233 (59.66%), Postives = 185/233 (79.40%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP P      +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Lcy02g002960 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-72
Identity = 136/233 (58.37%), Postives = 179/233 (76.82%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Lcy02g002960 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 137/236 (58.05%), Postives = 180/236 (76.27%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVP---YPGGVMVPEAPAPPNSILFVQNLPHETTPMMLQM 189
           Q  M          GAT  + +P    P G    +   PPN+ILF+ NLP ET  MMLQ+
Sbjct: 125 QPSM--------PNGATTQNGMPPPFQPSG----QDTMPPNNILFIHNLPIETNSMMLQL 184

Query: 190 LFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Lcy02g002960 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-60
Identity = 116/202 (57.43%), Postives = 153/202 (75.74%), Query Frame = 0


Query: 41  QFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIA 100
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 101 KSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYPGGVMVP 160
           K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  + +P P      
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 161 EAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVA 220
           +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 186

Query: 221 MQALQGFKMNPQNSMLITYAKK 243
           MQALQGFK+ PQN M++++AKK
Sbjct: 187 MQALQGFKITPQNPMVVSFAKK 200

The following BLAST results are available for this feature:

BLAST of Lcy02g002960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39244	2.7e-97	74.30	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
A2Y0J7	2.0e-92	74.90	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	2.0e-92	74.90	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O22922	2.1e-73	59.66	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
Q8H1S6	2.0e-71	58.37	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]

BLAST of Lcy02g002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0R3	3.7e-129	98.35	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BYG3	3.7e-129	98.35	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]
A0A6J1K6I0	4.1e-128	96.28	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GA71	4.1e-128	96.28	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0KWK4	5.3e-128	97.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1	[more]

BLAST of Lcy02g002960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906378.1	2.0e-129	98.76	U1 small nuclear ribonucleoprotein A [Benincasa hispida]	[more]
XP_008454331.1	7.6e-129	98.35	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]
XP_022948748.1	8.4e-128	96.28	U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U...	[more]
XP_011652939.1	1.1e-127	97.52	U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ...	[more]
KAA0044384.1	1.9e-127	97.94	U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa]	[more]

BLAST of Lcy02g002960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47580.1	1.9e-98	74.30	spliceosomal protein U1A	[more]
AT2G30260.1	1.5e-74	59.66	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.1	1.4e-72	58.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.6e-71	58.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.3	2.1e-60	57.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..90 e-value: 1.4E-13 score: 61.1 coord: 169..238 e-value: 2.0E-9 score: 47.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 170..230 e-value: 3.0E-12 score: 46.2 coord: 17..87 e-value: 1.6E-10 score: 40.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..94 score: 14.538761
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..242 score: 12.099839
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 157..242 e-value: 3.0E-20 score: 74.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..115 e-value: 1.2E-30 score: 107.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..132
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..242
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 6..242
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 166..238 e-value: 5.50188E-38 score: 125.374
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 16..93 e-value: 4.34828E-51 score: 159.231
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g002960.1	Lcy02g002960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding