Lcy01g007690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g007690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr01: 14704500 .. 14707846 (+)
RNA-Seq Expression	Lcy01g007690
Synteny	Lcy01g007690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGCCCGAACGGGTGTTTCCTTTGCTACAAAAGTTTGGAAAGTATGGACTATCTCTTTATTCGTTGTGACCTTGCTTATCCCATTTGGGTGTTCTTCCATCAGGCCACTGGTTTCCTTTTGCCGATTCCTCTCCATGTGGATCAATTTTATATGGAGATCTTTCATTGGAAGCCAAATTCTCAGAGGCATATTCTTATCCAATCATTCTTTACTGCCACTTTGTGGACTTTGTGGAATGAGCGCAACAGTCGAATCTTCAAAGGGATCTCTCGCAGCTCTGCTCAAATTAGGGAGGATAGCTTTGCTCTTTCTGGATTTTGGCCGTGTACCTCAAGCCTTTTTTGTAATTATGAAGCCTCTTCTATTTTCCTTATAATTGGGAGGCTTTCATGTAGCTTTTCCTTGGTATGTTTCTCACATACATGTTAATAAAGTATCCATTTTCTAAAAAAAGGAGTGTTTCTTGAGAGTTAAAACGAATGGTTCAAATTGGATCATGGAGACTTGGAGAGTTAGATTTTAGGGATGCAATTTTTAGAGTATAGTATTTTTGGTTCGACAATTTTTTAATCATGTTTGAGAGTTCAAGCCAACAAAAGCATGACTCAACTCACATAAAACTTGTATTCGACCAAGAGGTTAGAGGTTCAATTCCCTATCCCTACATGTTGTAAAAAAAAAAAGAGTGATAATTAAATGGATTTTCTATAAAAGTATTTTAAAGTGGTTTTATGTGTTTTTTAGAATTTCTAAAAGCAATCTTCACCATGTAACCCAACATCAAGAAAATTTTGGAAAATAATCGCAATTACTCATGTAAGAGCACTATTTCAGTCTTCCAAAATTATGTTAAAATACTCACCTAGATCATTTCATTTTTGACATGAGAGAAATTAGACGTAGAAATTTAAACAATGTTTATATTTATACATTATAACGGAAGTAAGGAAATTTCCCAATTTATTCTTTTTTTTTTTTCTTTTTTTGAGTTCAACAATATTTGTGGTGGAGGATTCGAACTCAGACTTCTTAATCATAAACACATACTTTAAATGCAAGTTTGAACAATCCTATTGTTGGTTTCCCAATTTATTGTTGAAAAACAAATTACTGAAGAAAAATGTAAAGGGCTCTTTATTGAAAAAAATAAAATAAAACTATTTACCATAATTTAGTTGTCCAACCATTATCGAACAGTATTGGGGTACGATTAATAATCTGTTATAGTTTTCTAAATATAGTTTTCCCATCAAACAAGTTTTTTTTTTATTATATATAGGGCTTCCAATCATTCAAAATTTCCAAACACCCTCACCTTTGCCATTGCTACTAATCATCATTTGTGAAACGAGCTTGTGCCCTGTGACTTTTAACACAATCAACCATGACAATGACAAGAGGTTTTAAGCTTTTTCACATTGTTTTCGTAGTGTTTGCTTGGCAGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCAATTTTCCTTCCGTGTATTTGGATCACATGGTTTTGGGATCCCAAAAGTTGGTGGTAGTGTCGCACCAAGTGTAGACATGCAGAGTCCTGTAGAAGCACCAGGGATTGCCCCTGTTGGGCTTGAAACTCCAATAAGCAAAGACAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTTTTGAAATTCCCAAGTGTAAGGGCGACATTGTTGTTTCTCATGGTCACGAAATAAGTAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTATGAAGAGCAGTGGTAGTGTTCTTTCAAATGGTGGCAACATTGATGTTTCCAAAGGTGGAAAAGTTAGTTTGAAGGGAGAGACGATATTGTTTCTCATGGTGTTGGAGCTACAAAGAGTAGTAATGTTGTTATTTCTCATGGTCTTAAAACTCTATTGAGTAGCACCAAAAAAGCCTTTTCTCTTTTGGTCTTGAAACAAAGAAGAGCATGACCTTATCTCATGGTCAAAGAACTCACAAGAGTAAAGGTGGCATTGTTGTTTCTCATTGTCGTGGAATTAATCTTAAGAATGGAGGTATTAATGCAAAGAGCAAAGGTAGTGTTGCAAAGCTATGTCCCCAGCTATCCATTTAGTCTTATCCCCAAAATGGTAGGCTTATTGAGTCTGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAGATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTTATATGTATGAGATGTTCAGTTTCAACAGTAAACGGTGTTGTAAAGTGAAAGTGACTTATCTCCTGGTCCGATCTCTATGCAAACTCTTTGAATAGGACACCCTCACTCACATGTCTTATACATGAACGATTAGGATCACATCGTCTGTCTTTAAATAACAAAGCGAGTCGCGCCAATAGTGTCCCCAGGATTAAGGTACTCAACCTTATTAATATACTATAGATCGTTTAGACTATTTACTTGAATTTGATCCATACTAATGTCACACATAAACTTCAAGTATACGTAATATAGCCAAGGGTTTTTTAGTTTATTGGATTTGTGGTTATATTTAGGCAAAACAAATATATAGAAATAATACTTCACTGAAGCAAGTCAAATGTTACATTTACTATCTATGAGTTTTAGGGCATAAAACCCAACAGTTTTGAGTAGACGATGCTTTCACAATGACTAGACAAGAATATTCAAAAAAATTAGGGAGGTAAACGAAAACGTCTCCTCTTATAGTCCTTTCCATGCCGAGAAAGCAATCCTCTACCTCCGAAACCCTGATTATTCTCATCTTCTTTGCAAAAATAAGGGATGGGTCACAGTGGGAAATTTTTATGTTAAGTTCGAACGATGGGACTCTGAAATGCACGTTGCTGCTAAACTTGTTCCCAGTACGGCGGATGGGTGAAGTTCTAGGGAATCCCACTCCATGCGTGGAATATGAAAACTTTTATTCAGATAGGGGAAGCTTATGGGGGCTTTATTGAGGTCTAAAAAAACACTACGCGTAAACTGGATCTTATCAAGGCTGTCATCAAGATTAAAGATAATTTATGTGGCTTCATTTTGGCGGCAATCAGAATTACAGATGATCAAGGGTAATGCTTCACGGTTCGTACGGTGTTGCCGAACAAAGGAAAATGGATGGTTTGCTGAAACCCTAAGATCCATGGAACGTTTACTCGAGAAGCGTCTTTGGAATATGATGAATTTGACGTCAAATCTGAATCATTTCTGTTCAGTGGAAATGAGGCATGCAGAGTGA

mRNA sequence

ATGATTAGCCCGAACGGGTGTTTCCTTTGCTACAAAAGTTTGGAAAGTATGGACTATCTCTTTATTCGTTGTGACCTTGCTTATCCCATTTGGGTGTTCTTCCATCAGGCCACTGGTTTCCTTTTGCCGATTCCTCTCCATGTGGATCAATTTTATATGGAGATCTTTCATTGGAAGCCAAATTCTCAGAGGCATATTCTTATCCAATCATTCTTTACTGCCACTTTGTGGACTTTGTGGAATGAGCGCAACAGTCGAATCTTCAAAGGGATCTCTCGCAGCTCTGCTCAAATTAGGGAGGATAGCTTTGCTCTTTCTGGATTTTGGCCGTGTACCTCAAGCCTTTTTTGTAATTATGAAGCCTCTTCTATTTTCCTTATAATTGGGAGGCTTTCATGTAGCTTTTCCTTGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCAATTTTCCTTCCGTGTATTTGGATCACATGGTTTTGGGATCCCAAAAGTTGGTGGTAGTGTCGCACCAAGTGTAGACATGCAGAGTCCTGTAGAAGCACCAGGGATTGCCCCTGTTGGGCTTGAAACTCCAATAAGCAAAGACAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTTTTGAAATTCCCAAGTGTAAGGGCGACATTGTTGTTTCTCATGGTCACGAAATAAGTAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTATGAAGAGCAGTGGTAGTGTTCTTTCAAATGGTGGCAACATTGATGTTTCCAAAGGTGGAAAAGGGAAGCTTATGGGGGCTTTATTGAGGTCTAAAAAAACACTACGCGTAAACTGGATCTTATCAAGGCTGTCATCAAGATTAAAGATAATTTATGTGGCTTCATTTTGGCGGCAATCAGAATTACAGATGATCAAGGGTAATGCTTCACGGTTCGTACGGTGTTGCCGAACAAAGGAAAATGGATGGTTTGCTGAAACCCTAAGATCCATGGAACGTTTACTCGAGAAGCGTCTTTGGAATATGATGAATTTGACGTCAAATCTGAATCATTTCTGTTCAGTGGAAATGAGGCATGCAGAGTGA

Coding sequence (CDS)

ATGATTAGCCCGAACGGGTGTTTCCTTTGCTACAAAAGTTTGGAAAGTATGGACTATCTCTTTATTCGTTGTGACCTTGCTTATCCCATTTGGGTGTTCTTCCATCAGGCCACTGGTTTCCTTTTGCCGATTCCTCTCCATGTGGATCAATTTTATATGGAGATCTTTCATTGGAAGCCAAATTCTCAGAGGCATATTCTTATCCAATCATTCTTTACTGCCACTTTGTGGACTTTGTGGAATGAGCGCAACAGTCGAATCTTCAAAGGGATCTCTCGCAGCTCTGCTCAAATTAGGGAGGATAGCTTTGCTCTTTCTGGATTTTGGCCGTGTACCTCAAGCCTTTTTTGTAATTATGAAGCCTCTTCTATTTTCCTTATAATTGGGAGGCTTTCATGTAGCTTTTCCTTGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCAATTTTCCTTCCGTGTATTTGGATCACATGGTTTTGGGATCCCAAAAGTTGGTGGTAGTGTCGCACCAAGTGTAGACATGCAGAGTCCTGTAGAAGCACCAGGGATTGCCCCTGTTGGGCTTGAAACTCCAATAAGCAAAGACAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTTTTGAAATTCCCAAGTGTAAGGGCGACATTGTTGTTTCTCATGGTCACGAAATAAGTAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTATGAAGAGCAGTGGTAGTGTTCTTTCAAATGGTGGCAACATTGATGTTTCCAAAGGTGGAAAAGGGAAGCTTATGGGGGCTTTATTGAGGTCTAAAAAAACACTACGCGTAAACTGGATCTTATCAAGGCTGTCATCAAGATTAAAGATAATTTATGTGGCTTCATTTTGGCGGCAATCAGAATTACAGATGATCAAGGGTAATGCTTCACGGTTCGTACGGTGTTGCCGAACAAAGGAAAATGGATGGTTTGCTGAAACCCTAAGATCCATGGAACGTTTACTCGAGAAGCGTCTTTGGAATATGATGAATTTGACGTCAAATCTGAATCATTTCTGTTCAGTGGAAATGAGGCATGCAGAGTGA

Protein sequence

MISPNGCFLCYKSLESMDYLFIRCDLAYPIWVFFHQATGFLLPIPLHVDQFYMEIFHWKPNSQRHILIQSFFTATLWTLWNERNSRIFKGISRSSAQIREDSFALSGFWPCTSSLFCNYEASSIFLIIGRLSCSFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAPGIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNIDISNGGKVSMKSSGSVLSNGGNIDVSKGGKGKLMGALLRSKKTLRVNWILSRLSSRLKIIYVASFWRQSELQMIKGNASRFVRCCRTKENGWFAETLRSMERLLEKRLWNMMNLTSNLNHFCSVEMRHAE

Homology

[Close]

BLAST of Lcy01g007690 vs. ExPASy TrEMBL
Match: A0A0A0K7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-24
Identity = 75/145 (51.72%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF+D TGVV+ GLNHQFSFR FG    G P V GS+  +V  Q   EAP
Sbjct: 18  AWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDGSITSTVKKQIHAEAP 77

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGLET I+K++K  S+ L+I K +            G  VVSH HE +  SG NI
Sbjct: 78  AGIAPVGLETMINKEDKVQSYDLDIIKQIK----------GGGAVVSHDHESNLNSGENI 137

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID 277
             S+GGKVS+KS GSV  S+GG I+
Sbjct: 138 AFSHGGKVSVKSKGSVAGSSGGEIN 152

[Close]

BLAST of Lcy01g007690 vs. ExPASy TrEMBL
Match: A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.6e-24
Identity = 83/162 (51.23%), Postives = 104/162 (64.20%), Query Frame = 0


Query: 139 CAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP-GIAP 198
           C KV ATFNDVTGVV+L LNH FSFR FG    G P   GS+A +V+  +  EAP GIAP
Sbjct: 20  CVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAP 79

Query: 199 VGLETPISKDNKALSFGLEIKK----GLTTSLGFEIP-KCKGDIVVSHGHEIS--KKSGV 258
           VGL+TPI+K +K  +FGLEI K    G+  S   EI  K  G+I +SHG +IS   K GV
Sbjct: 80  VGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGV 139

Query: 259 NIDISNGGKVSMKSSGSVL-SNGGNIDVSKGGKGKLMGALLR 292
           ++ I NGGK  +KSSG+VL S+G    +SK  KG   G  ++
Sbjct: 140 SVSI-NGGKFGLKSSGNVLVSHGFETSMSKNNKGLSFGVEIK 178

[Close]

BLAST of Lcy01g007690 vs. ExPASy TrEMBL
Match: A0A5A7U057 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001040 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-23
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF D TGVV+ GLNHQFSFR FG    G P V G++  +V  Q   EAP
Sbjct: 18  AWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAP 77

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGL+T I+K+ KA S+ L+I           I + KG   +S+ HE +  +G NI
Sbjct: 78  AGIAPVGLQTLINKEKKAQSYDLDI-----------IKQIKGGGAISNDHESNLNNGENI 137

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID 277
             S+GGKVS+KS GSV  S+GG I+
Sbjct: 138 AFSHGGKVSVKSKGSVAGSSGGKIN 151

[Close]

BLAST of Lcy01g007690 vs. ExPASy TrEMBL
Match: A0A0A0KAZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-22
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 143 TATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP-GIAPVGLE 202
           +ATF+D TGVV+ GLNHQFSFR FG    G P V GS+  +V+ Q   EAP GIAPVGLE
Sbjct: 6   SATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVGLE 65

Query: 203 TPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNIDISNGGKVS 262
           T I+K++K  S+ L+I K +            G  VVSH HE +  SG NI  S+GGKVS
Sbjct: 66  TMINKEDKVQSYDLDIIKQIK----------GGGAVVSHDHESNLNSGENIAFSHGGKVS 125

Query: 263 MKSSGSVL-SNGGNID 277
           +KS GSV  S+GG I+
Sbjct: 126 VKSKGSVAGSSGGEIN 131

[Close]

BLAST of Lcy01g007690 vs. ExPASy TrEMBL
Match: A0A5A7U318 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001070 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-21
Identity = 79/166 (47.59%), Postives = 97/166 (58.43%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF+D TGVV+ GLNHQFSFR FG    G P V GS+  +V  Q   EAP
Sbjct: 19  AWKYCCAQVGATFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAP 78

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGLETPI+K +K  S   +I           I + KG   VS+ HE    SG NI
Sbjct: 79  VGIAPVGLETPINKKDKVQSDNFDI-----------IKQIKGGGAVSNDHESKLNSGENI 138

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID--VSK-GGKGKLMGALLRSKK 295
             S  GKVS+KS  SV  S+GG I+  +SK   KG  +G  +  KK
Sbjct: 139 AFSYVGKVSVKSKNSVAGSSGGKINGVMSKINNKGLSLGFGVEIKK 173

[Close]

BLAST of Lcy01g007690 vs. NCBI nr
Match: KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 9.5e-25
Identity = 75/145 (51.72%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF+D TGVV+ GLNHQFSFR FG    G P V GS+  +V+ Q   EAP
Sbjct: 18  AWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAP 77

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGLET I+K++K  S+ L+I K +            G  VVSH HE +  SG NI
Sbjct: 78  AGIAPVGLETMINKEDKVQSYDLDIIKQIK----------GGGAVVSHDHESNLNSGENI 137

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID 277
             S+GGKVS+KS GSV  S+GG I+
Sbjct: 138 AFSHGGKVSVKSKGSVAGSSGGEIN 152

[Close]

BLAST of Lcy01g007690 vs. NCBI nr
Match: KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-22
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF D TGVV+ GLNHQFSFR FG    G P V G++  +V  Q   EAP
Sbjct: 18  AWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAP 77

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGL+T I+K+ KA S+ L+I           I + KG   +S+ HE +  +G NI
Sbjct: 78  AGIAPVGLQTLINKEKKAQSYDLDI-----------IKQIKGGGAISNDHESNLNNGENI 137

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID 277
             S+GGKVS+KS GSV  S+GG I+
Sbjct: 138 AFSHGGKVSVKSKGSVAGSSGGKIN 151

[Close]

BLAST of Lcy01g007690 vs. NCBI nr
Match: KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-21
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 0


Query: 144 ATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP-GIAPVGLET 203
           ATFNDVTGVV+L LNH FSFR FG    G P   GS+A +V+  +  EAP GIAPVGL+T
Sbjct: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDT 60

Query: 204 PISKDNKALSFGLEIKK----GLTTSLGFEIP-KCKGDIVVSHGHEIS--KKSGVNIDIS 263
           PI+K +K  +FGLEI K    G+  S   EI  K  G+I +SHG +IS   K GV++ I 
Sbjct: 61  PINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSI- 120

Query: 264 NGGKVSMKSSGSVL-SNGGNIDVSKGGKGKLMGALLR 292
           NGGK  +KSSG+VL S+G    +SK  KG   G  ++
Sbjct: 121 NGGKFGLKSSGNVLVSHGFETSMSKNNKGLSFGVEIK 154

[Close]

BLAST of Lcy01g007690 vs. NCBI nr
Match: KAA0048677.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-21
Identity = 79/166 (47.59%), Postives = 97/166 (58.43%), Query Frame = 0


Query: 134 SFSLCCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAP 193
           ++  CCA+V ATF+D TGVV+ GLNHQFSFR FG    G P V GS+  +V  Q   EAP
Sbjct: 19  AWKYCCAQVGATFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAP 78

Query: 194 -GIAPVGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNI 253
            GIAPVGLETPI+K +K  S   +I           I + KG   VS+ HE    SG NI
Sbjct: 79  VGIAPVGLETPINKKDKVQSDNFDI-----------IKQIKGGGAVSNDHESKLNSGENI 138

Query: 254 DISNGGKVSMKSSGSVL-SNGGNID--VSK-GGKGKLMGALLRSKK 295
             S  GKVS+KS  SV  S+GG I+  +SK   KG  +G  +  KK
Sbjct: 139 AFSYVGKVSVKSKNSVAGSSGGKINGVMSKINNKGLSLGFGVEIKK 173

[Close]

BLAST of Lcy01g007690 vs. NCBI nr
Match: XP_023004881.1 (uncharacterized protein LOC111498059 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 2.8e-16
Identity = 68/164 (41.46%), Postives = 84/164 (51.22%), Query Frame = 0


Query: 138 CCAKVTATFNDVTGVVDLGLNHQFSFRVFGSHGFGIPKVGGSVAPSVDMQSPVEAPGIAP 197
           CCA++ ATFNDVTGV+  G NH+FSFR FG H  GI K   +   S              
Sbjct: 21  CCARLGATFNDVTGVIGQGRNHRFSFRSFGDHYIGISKFDHTAIQS-------------- 80

Query: 198 VGLETPISKDNKALSFGLEIKKGLTTSLGFEIPKCKGDIVVSHGHEISKKSGVNIDISNG 257
               + +S D+KA SF  EIKKG    +G E+PK  G    S GHEI +K G NI  S G
Sbjct: 81  ----SEVSVDDKASSFRNEIKKGGAAFVGREVPKINGGGGFSKGHEIIRKRGGNIVYSYG 140

Query: 258 GK---VSMKSSGSVLSNGGNIDVSKGGKGKLMGALLRSKKTLRV 299
           GK   V +K SG    NGG     + G   L G+ +R K +  V
Sbjct: 141 GKILPVGLKRSG----NGGETSSKELGADVLDGSNIRLKSSANV 162

[Close]

BLAST of Lcy01g007690 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-08
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 4   PNGCFLCYKSLESMDYLFIRCDLAYPIWVFFHQATGFLLPIPLHVDQFYMEIFHW--KPN 63
           P  C LC    +S  +LF  C  +  +W FF  +T    P  L      M+  +W   P+
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQL------MDCLNWLLSPS 227

Query: 64  SQRHI--LIQSFFTATLWTLWNERNSRIFKGISRSSAQIRED 102
            +++I  +I+  F + ++ +W ERN R+  G+SRS+  I +D
Sbjct: 228 REKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKD 263

[Close]

BLAST of Lcy01g007690 vs. TAIR 10
Match: AT4G05095.1 (BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 4.7e-06
Identity = 28/99 (28.28%), Postives = 47/99 (47.47%), Query Frame = 0


Query: 4   PNGCFLCYKSLESMDYLFIRCDLAYPIWVFFHQATGFLLPIPLHVDQFYMEIFHWKPNSQ 63
           P+ C LC  + E  ++LF  C +++ +W        F+    L     +M+   W  +  
Sbjct: 9   PSDCVLCSGNAEFREHLFFGCGVSFAVW------GNFMFRASLTPPLLFMDCLTWVLSPS 68

Query: 64  R----HILIQSFFTATLWTLWNERNSRIFKGISRSSAQI 99
           R     ++I+  F A+++ LW ERN R+    SRSS  I
Sbjct: 69  RDPNISLIIKLVFQASIYFLWKERNRRLHDHASRSSTAI 101

[Close]

BLAST of Lcy01g007690 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.8 bits (107), Expect = 8.9e-05
Identity = 27/96 (28.12%), Postives = 44/96 (45.83%), Query Frame = 0


Query: 4   PNGCFLCYKSLESMDYLFIRCDLAYPIWVFFHQATGFLLPIPLHVDQFYMEIFHWKPNSQ 63
           P+   LC    E+  +LF  C  +  IW FF  A+ F    P  +      I      S 
Sbjct: 166 PSSWVLCSNGDETHAHLFFECSFSLAIWEFF--ASKFRPSPPFGLPAASSWILQLPLRSH 225

Query: 64  RHILIQSFFTATLWTLWNERNSRIFKGISRSSAQIR 100
              +++    + ++ +W ERN+RIF  IS S++ +R
Sbjct: 226 STTILKLLLQSAVYHVWKERNARIFTSISSSASSLR 259

The following BLAST results are available for this feature:

BLAST of Lcy01g007690 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g007690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W7	1.3e-24	51.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]
A0A0A0K5J0	6.6e-24	51.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]
A0A5A7U057	5.6e-23	48.97	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A0A0KAZ8	2.1e-22	52.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1	[more]
A0A5A7U318	3.1e-21	47.59	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]

BLAST of Lcy01g007690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646352.1	9.5e-25	51.72	hypothetical protein Csa_015951, partial [Cucumis sativus]	[more]
KAA0048674.1	1.2e-22	48.97	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro...	[more]
KAE8646351.1	1.3e-21	50.96	hypothetical protein Csa_023818, partial [Cucumis sativus]	[more]
KAA0048677.1	6.3e-21	47.59	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat pro...	[more]
XP_023004881.1	2.8e-16	41.46	uncharacterized protein LOC111498059 [Cucurbita maxima]	[more]

BLAST of Lcy01g007690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04650.1	6.6e-08	30.39	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G05095.1	4.7e-06	28.28	BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse...	[more]
AT5G18880.1	8.9e-05	28.13	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g007690.1	Lcy01g007690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane