IVF0020607 (gene) Melon (IVF77) v1

Overview


Name	IVF0020607
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	tig00195367: 138596 .. 139801 (-)
RNA-Seq Expression	IVF0020607
Synteny	IVF0020607

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAAAATATTATACTTCTAATCGGTTTCCTCATAAAATTTTAACTTGGGTATGGGAGTTCTTTCATCTTTACATGCAATTAGTACACTTTATAATCAAATTAATATGATTTACACATAATTTAAAGAAATATTAGTGTGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAAGGGTAAGGCCAGAAAGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGGTATGTACTTTTCTATTGTTTTATTTTCATAATCCAAAAATATTTTACTAATTAAATTTAGTCCAAAGTCTAATTATTGATTAACTTTTTTTGTTGAACTTTAATTTGATCATTTGGATTATGATATGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATC

mRNA sequence

ATTTAAAATATTATACTTCTAATCGGTTTCCTCATAAAATTTTAACTTGGGTATGGGAGTTCTTTCATCTTTACATGCAATTAGTACACTTTATAATCAAATTAATATGATTTACACATAATTTAAAGAAATATTAGTGTGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAAGGGTAAGGCCAGAAAGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATC

Coding sequence (CDS)

ATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAG

Protein sequence

MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of IVF0020607 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-49
Identity = 101/148 (68.24%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of IVF0020607 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of IVF0020607 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of IVF0020607 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-09
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of IVF0020607 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of IVF0020607 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 187
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of IVF0020607 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 187
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of IVF0020607 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.2e-88
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPT LANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPT-LANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 187
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of IVF0020607 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL IHRRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHR-CHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQN++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183

Query: 186 A 187
           A
Sbjct: 185 A 183

[Close]

BLAST of IVF0020607 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHR-CHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYF+PGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQND+VKTANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLVAIL 183

Query: 186 A 187
           A
Sbjct: 185 A 183

[Close]

BLAST of IVF0020607 vs. NCBI nr
Match: XP_008437911.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis melo] >KAA0048899.1 photosynthetic NDH subunit of lumenal location 2 [Cucumis melo var. makuwa] >TYK20849.1 photosynthetic NDH subunit of lumenal location 2 [Cucumis melo var. makuwa])

HSP 1 Score: 364 bits (935), Expect = 6.74e-127
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 186
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of IVF0020607 vs. NCBI nr
Match: XP_004133817.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus] >KGN56433.1 hypothetical protein Csa_010782 [Cucumis sativus])

HSP 1 Score: 334 bits (857), Expect = 5.45e-115
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 186
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of IVF0020607 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 317 bits (813), Expect = 2.67e-108
Identity = 168/186 (90.32%), Postives = 170/186 (91.40%), Query Frame = 0


Query: 3   TLLANANSTLFSSPISTPHKSLHRR--HFPIITASLPIHRRHIATTLAVVIGLQAATPLA 62
           T  ANAN TLF S ISTPHK  HRR  HFPIITASL IHRRHIAT LA VIGLQA  PLA
Sbjct: 2   TSFANAN-TLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATAPLA 61

Query: 63  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 122
           LAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLET SWRYVIFYIRLKSA
Sbjct: 62  LAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSA 121

Query: 123 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 182
           YLSQDLKTAM+ LPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 122 YLSQDLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 181

Query: 183 LVALLA 186
           LVALLA
Sbjct: 182 LVALLA 186

[Close]

BLAST of IVF0020607 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 297 bits (760), Expect = 2.87e-100
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL IHRRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQN++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of IVF0020607 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 294 bits (752), Expect = 4.76e-99
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYF+PGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQND+VKTANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of IVF0020607 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 101/148 (68.24%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of IVF0020607 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-35
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAEL 156
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of IVF0020607 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of IVF0020607 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of IVF0020607 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

The following BLAST results are available for this feature:

BLAST of IVF0020607 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	1.6e-49	68.24	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	1.3e-09	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41932	1.7e-09	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	3.7e-09	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	4.8e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of IVF0020607 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC39	8.3e-97	100.00	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	8.3e-97	100.00	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]
A0A0A0L3W3	9.2e-88	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A6J1G2K7	1.6e-76	84.53	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	1.4e-75	83.43	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]

BLAST of IVF0020607 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437911.1	6.74e-127	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
XP_004133817.1	5.45e-115	93.62	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus...	[more]
XP_038880767.1	2.67e-108	90.32	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022946003.1	2.87e-100	84.53	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	4.76e-99	83.43	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]

BLAST of IVF0020607 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	1.2e-50	68.24	PsbQ-like 2	[more]
AT1G14150.2	8.9e-35	63.25	PsbQ-like 2	[more]
AT4G05180.1	1.2e-10	27.83	photosystem II subunit Q-2	[more]
AT4G21280.1	3.4e-10	26.09	photosystem II subunit QA	[more]
AT4G21280.2	3.4e-10	26.09	photosystem II subunit QA	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 171..186
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 31..186
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 43..185 e-value: 2.9E-39 score: 136.5
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 75..186
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 62..186 e-value: 4.5E-33 score: 114.7
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 31..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020607.2	IVF0020607.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity