IVF0012978 (gene) Melon (IVF77) v1

Overview


Name	IVF0012978
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Photosystem II reaction center protein K
Location	tig00000662: 146099 .. 147769 (-)
RNA-Seq Expression	IVF0012978
Synteny	IVF0012978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAATAATAATACGCATACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTGGCCACGCCCCATTTATATTCAACACTAATAAACACTAATATTGGTAGTGCTTAGTCGTCAATTCCAGTACAAATATTTATAGAATAAATTAGATTGTTGCTCAGATTTTGATACGTTTATAGATCCAATTAAACTCAATTTATTGATCATTACATATAATTCCATTAAGATATTGTATGAAAGTAGGATTTCTTCTATTCTCGTTTTATTTGAGAATTGAAGGATTTTTGATTGGCTGAGTTCAAATCAAAGAAAGGTTTTTTGACCTACTTTATGTTATTAATTTTTCCCTTATCCCTTATATCATAGCAATAATAGGGGATTAATAACTCAATCAAATCAAAAGAAATACAATTATCTTCAAGAACAAAGAAAAAAAAATTGTTATGCTTAATATCTTAAGTTTCATCGGTATCTGTCTTAATTCTTTCCTTTATTCAAGTAGTTTTTTCGTCGCCAAATTGCCCGAGGCCTACGCTTTTTTGAATCCAATAGTAGATGTTATGCCAGTAATACCTCTATTCTTTTTTCTATTAGCTTTTGTTTGGCAAGCTGCTGTAAGCTTTCGATAATATTTTTAATACTGTCCGAGACAAATTCATGATTTACTAGAAAAAAAAAAAAAAAAGATTCTAACTAGTTATAAGATCAGATAAGTTGTACATACAGTCTGAAGCTTTAAGTTGAATCCAATATTGAAATTATTCTATAGCTGTGATAAATCTGGATCACTCTCATTTTCTTATTCTTACTTTTTTCCTTTGAACGACCCTCTTCGAGTCCCCCACAATATAGAATTGTGGGTATGAAATCCAATTTTGAGTAATCAAGGACTCAACTCTTAAAATTTTTTCCTATTTATAGAAATAACTTCACTGCATTTCTTGGTGTCAAACCAGATTAAAATAGAGAATCTATTCTCTTAAAAAAAAAATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAACAAAATCAGATTTTTTTTCCTTGCTTGATTTTGAAATGTTCTTAACATTTTATCTATTCCACATCTTTCCTCAACTATAAAAAAATACCAAGTAATTGACAGAAACGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAAAATCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCCAAATTGAAAAAGGATAATTACTATGATACATTGTATAAAAAATAGAAAATAAAGGCTTGAAAAAAGCCCTTCTTTATCTCTCTTTATTATCTTTATCTACCCCTTTATAGATATATAATTTCATTATATTGATATAGATAATTATCTAGATATATCGATGGATATCTATCAAATCGATAAAAACTTTTTTTTATTAGGAATTCCATTTAGATAAATTAGATTTCATTAGATAAGGGCTCAAAAGAAGAGATATCTTCAATCCTAATATATAAATAATACCAATATATTAAAGATTCATAAAAATATTTATAAATAAAAAGAAAGTACCC

mRNA sequence

ATATAATAATAATACGCATACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTGGCCACGCCCCATTTATATTCAACACTAATAAACACTAATATTGGTAGTGCTTAGTCGTCAATTCCAGTACAAATATTTATAGAATAAATTAGATTGTTGCTCAGATTTTGATACGTTTATAGATCCAATTAAACTCAATTTATTGATCATTACATATAATTCCATTAAGATATTGTATGAAAGTAGGATTTCTTCTATTCTCGTTTTATTTGAGAATTGAAGGATTTTTGATTGGCTGAGTTCAAATCAAAGAAAGGTTTTTTGACCTACTTTATGTTATTAATTTTTCCCTTATCCCTTATATCATAGCAATAATAGGGGATTAATAACTCAATCAAATCAAAAGAAATACAATTATCTTCAAGAACAAAGAAAAAAAAATTGTTATGCTTAATATCTTAAGTTTCATCGGTATCTGTCTTAATTCTTTCCTTTATTCAAGTAGTTTTTTCGTCGCCAAATTGCCCGAGGCCTACGCTTTTTTGAATCCAATAGTAGATGTTATGCCAGTAATACCTCTATTCTTTTTTCTATTAGCTTTTGTTTGGCAAGCTGCTGTAAGCTTTCGATAATATTTTTAATACTGTCCGAGACAAATTCATGATTTACTAGAAAAAAAAAAAAAAAAGATTCTAACTAGTTATAAGATCAGATAAGTTGTACATACAGTCTGAAGCTTTAAGTTGAATCCAATATTGAAATTATTCTATAGCTGTGATAAATCTGGATCACTCTCATTTTCTTATTCTTACTTTTTTCCTTTGAACGACCCTCTTCGAGTCCCCCACAATATAGAATTGTGGGTATGAAATCCAATTTTGAGTAATCAAGGACTCAACTCTTAAAATTTTTTCCTATTTATAGAAATAACTTCACTGCATTTCTTGGTGTCAAACCAGATTAAAATAGAGAATCTATTCTCTTAAAAAAAAAATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAACAAAATCAGATTTTTTTTCCTTGCTTGATTTTGAAATGTTCTTAACATTTTATCTATTCCACATCTTTCCTCAACTATAAAAAAATACCAAGTAATTGACAGAAACGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAAAATCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCCAAATTGAAAAAGGATAATTACTATGATACATTGTATAAAAAATAGAAAATAAAGGCTTGAAAAAAGCCCTTCTTTATCTCTCTTTATTATCTTTATCTACCCCTTTATAGATATATAATTTCATTATATTGATATAGATAATTATCTAGATATATCGATGGATATCTATCAAATCGATAAAAACTTTTTTTTATTAGGAATTCCATTTAGATAAATTAGATTTCATTAGATAAGGGCTCAAAAGAAGAGATATCTTCAATCCTAATATATAAATAATACCAATATATTAAAGATTCATAAAAATATTTATAAATAAAAAGAAAGTACCC

Coding sequence (CDS)

ATGCTTAATATCTTAAGTTTCATCGGTATCTGTCTTAATTCTTTCCTTTATTCAAGTAGTTTTTTCGTCGCCAAATTGCCCGAGGCCTACGCTTTTTTGAATCCAATAGTAGATGTTATGCCAGTAATACCTCTATTCTTTTTTCTATTAGCTTTTGTTTGGCAAGCTGCTGTAAGCTTTCGATAA

Protein sequence

MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR

Homology

[Close]

BLAST of IVF0012978 vs. ExPASy Swiss-Prot
Match: Q4VZQ0 (Photosystem II reaction center protein K OS=Cucumis sativus OX=3659 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy Swiss-Prot
Match: Q8S8Y4 (Photosystem II reaction center protein K OS=Atropa belladonna OX=33113 GN=psbK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLN  S IGICLNS LYSSSFF  KLPEAYAFLNPIVD+MPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy Swiss-Prot
Match: Q2MIK4 (Photosystem II reaction center protein K OS=Solanum bulbocastanum OX=147425 GN=psbK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLN  S IGICLNS LYSSSFF  KLPEAYAFLNPIVD+MPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy Swiss-Prot
Match: Q2MIB7 (Photosystem II reaction center protein K OS=Solanum lycopersicum OX=4081 GN=psbK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLN  S IGICLNS LYSSSFF  KLPEAYAFLNPIVD+MPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy Swiss-Prot
Match: Q2VEJ3 (Photosystem II reaction center protein K OS=Solanum tuberosum OX=4113 GN=psbK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLN  S IGICLNS LYSSSFF  KLPEAYAFLNPIVD+MPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy TrEMBL
Match: A0A218KG14 (Photosystem II reaction center protein K OS=Cucumis sativus var. hardwickii OX=319220 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy TrEMBL
Match: A0A410HFE4 (Photosystem II reaction center protein K OS=Trichosanthes kirilowii OX=3677 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy TrEMBL
Match: G3ETW8 (Photosystem II reaction center protein K OS=Cucumis melo subsp. melo OX=412675 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy TrEMBL
Match: A0A1X9Q1R6 (Photosystem II reaction center protein K OS=Cucumis sativus OX=3659 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. ExPASy TrEMBL
Match: A0A249RZF0 (Photosystem II reaction center protein K OS=Cucumis melo var. cantalupensis OX=3658 GN=psbK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of IVF0012978 vs. NCBI nr
Match: YP_004841766.1 (photosystem II protein K [Cucumis melo subsp. melo] >YP_009004028.1 photosystem II protein K [Cucumis hystrix] >YP_009346468.1 photosystem II protein K [Cucumis x hytivus] >YP_009447433.1 photosystem II protein K [Cucurbita maxima] >YP_009447518.1 photosystem II protein K [Cucurbita moschata] >YP_009456129.1 photosystem II protein K [Lagenaria siceraria] >YP_009560818.1 PsbK [Trichosanthes kirilowii] >YP_009751721.1 photosystem II subunit K [Herpetospermum pedunculosum] >YP_009751889.1 photosystem II subunit K [Cyclanthera pedata] >YP_009752058.1 photosystem II subunit K [Dendrosicyos socotranus] >YP_009752226.1 photosystem II subunit K [Trichosanthes baviensis] >YP_009752395.1 photosystem II subunit K [Trichosanthes tricuspidata] >YP_009752479.1 photosystem II subunit K [Trichosanthes tubiflora] >YP_009752564.1 photosystem II subunit K [Trichosanthes homophylla] >YP_009752649.1 photosystem II subunit K [Ampelosycios humblotii] >YP_009753157.1 photosystem II subunit K [Trichosanthes truncata] >YP_009753241.1 photosystem II subunit K [Nothoalsomitra suberosa] >YP_009753603.1 photosystem II subunit K [Trichosanthes wallichiana] >YP_009753688.1 photosystem II subunit K [Trichosanthes nervifolia] >YP_009753772.1 photosystem II subunit K [Trichosanthes pilosa] >YP_009753857.1 photosystem II subunit K [Trichosanthes lobata] >YP_009860056.1 photosystem II protein K [Cucumis melo subsp. agrestis] >YP_247582.1 photosystem II protein K [Cucumis sativus] >Q4VZQ0.1 RecName: Full=Photosystem II reaction center protein K; Short=PSII-K; Flags: Precursor [Cucumis sativus] >ALF03284.1 photosystem II protein K [Cucumis sativus var. hardwickii] >ALO21716.1 PsbK [Cucurbita argyrosperma] >ALO21779.1 PsbK [Cucurbita argyrosperma var. palmeri] >ALO21839.1 PsbK [Cucurbita argyrosperma subsp. sororia] >ALO21949.1 PsbK [Cucurbita cordata] >ALO22001.1 PsbK [Cucurbita digitata] >ALO22087.1 PsbK [Cucurbita ecuadorensis] >ALO22129.1 PsbK [Cucurbita ficifolia] >ALO22170.1 PsbK [Cucurbita foetidissima] >ALO22229.1 PsbK [Cucurbita lundelliana] >ALO22286.1 PsbK [Cucurbita maxima subsp. andreana] >ALO22415.1 PsbK [Cucurbita okeechobeensis] >ALO22494.1 PsbK [Cucurbita okeechobeensis subsp. martinezii] >ALO22917.1 PsbK [Cucurbita pedatifolia] >ASY96634.1 photosystem II protein K [Cucumis melo var. conomon] >ASY96722.1 photosystem II protein K [Cucumis melo var. makuwa] >ASY96809.1 photosystem II protein K [Cucumis melo var. momordica] >ASY96896.1 photosystem II protein K [Cucumis melo var. dudaim] >ASY96983.1 photosystem II protein K [Cucumis melo var. cantalupo] >ASY97157.1 photosystem II protein K [Cucumis melo var. inodorus] >ASY97331.1 photosystem II protein K [Cucumis melo var. flexuosus] >AVE15314.1 PsbK [Cucumis sativus var. sativus] >QIT04116.1 photosystem II subunit K [Sechium edule] >QJD26454.1 PsbK [Trichosanthes kirilowii var. japonica] >QJD26628.1 PsbK [Trichosanthes rosthornii] >QJF46366.1 photosystem II protein K [Cucumis melo] >QKX48456.1 photosystem II protein K [Luffa acutangula] >QNM38514.1 photosystem II protein K [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 114 bits (286), Expect = 6.82e-32
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

[Close]

BLAST of IVF0012978 vs. NCBI nr
Match: YP_009505063.1 (photosystem II protein K [Cucurbita pepo] >YP_009525169.1 photosystem II protein K [Hodgsonia macrocarpa] >YP_009751636.1 photosystem II subunit K [Hodgsonia heteroclita] >ALO22553.1 PsbK [Cucurbita pepo subsp. fraterna] >ALO22614.1 PsbK [Cucurbita pepo subsp. ovifera] >ALO22720.1 PsbK [Cucurbita pepo var. ozarkana] >ALO22792.1 PsbK [Cucurbita pepo subsp. pepo] >ALO22840.1 PsbK [Cucurbita pepo var. texana])

HSP 1 Score: 114 bits (285), Expect = 9.69e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVD+MPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSF 60

[Close]

BLAST of IVF0012978 vs. NCBI nr
Match: YP_009325972.1 (photosystem II protein K [Citrullus lanatus] >YP_009348014.1 photosystem II protein K [Citrullus mucosospermus] >YP_009420777.1 photosystem II protein K [Citrullus colocynthis] >YP_009431540.1 photosystem II protein K [Citrullus amarus] >YP_009431625.1 photosystem II protein K [Citrullus rehmii] >APW82444.1 photosystem II protein K [Citrullus lanatus subsp. vulgaris] >QZL38664.1 photosystem II subunit K [Citrullus ecirrhosus] >APD52463.1 photosystem II protein K [Citrullus lanatus] >APW82529.1 photosystem II protein K [Citrullus lanatus subsp. vulgaris] >APW82614.1 photosystem II protein K [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 113 bits (283), Expect = 1.96e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYSS+FFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSSTFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

[Close]

BLAST of IVF0012978 vs. NCBI nr
Match: YP_009317369.1 (photosystem II protein K [Coccinia grandis] >YP_009751973.1 photosystem II subunit K [Cionosicys macranthus] >AOX48779.1 photosystem II protein K [Coccinia grandis] >AOX48864.1 photosystem II protein K [Coccinia grandis] >QIT05214.1 photosystem II subunit K [Cionosicys macranthus])

HSP 1 Score: 113 bits (283), Expect = 1.96e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSF+GICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFMGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

[Close]

BLAST of IVF0012978 vs. NCBI nr
Match: YP_010131077.1 (photosystem II protein K [Benincasa hispida] >QPZ75724.1 photosystem II protein K [Benincasa hispida] >QSQ72293.1 photosystem II subunit K [Benincasa hispida])

HSP 1 Score: 113 bits (283), Expect = 1.96e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNILSFIGICLNSFLYS+SFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF
Sbjct: 1  MLNILSFIGICLNSFLYSNSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60

[Close]

BLAST of IVF0012978 vs. TAIR 10
Match: ATCG00070.1 (photosystem II reaction center protein K precursor )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSF 60
          MLNI + I I  NS L+SS+F VAKLPEAYAFLNPIVDVMPVIPLFF LLAFVWQAAVSF
Sbjct: 1  MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSF 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:

BLAST of IVF0012978 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZQ0	5.4e-26	100.00	Photosystem II reaction center protein K OS=Cucumis sativus OX=3659 GN=psbK PE=3...	[more]
Q8S8Y4	3.6e-22	88.52	Photosystem II reaction center protein K OS=Atropa belladonna OX=33113 GN=psbK P...	[more]
Q2MIK4	3.6e-22	88.52	Photosystem II reaction center protein K OS=Solanum bulbocastanum OX=147425 GN=p...	[more]
Q2MIB7	3.6e-22	88.52	Photosystem II reaction center protein K OS=Solanum lycopersicum OX=4081 GN=psbK...	[more]
Q2VEJ3	3.6e-22	88.52	Photosystem II reaction center protein K OS=Solanum tuberosum OX=4113 GN=psbK PE...	[more]

BLAST of IVF0012978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG14	2.0e-23	100.00	Photosystem II reaction center protein K OS=Cucumis sativus var. hardwickii OX=3...	[more]
A0A410HFE4	2.0e-23	100.00	Photosystem II reaction center protein K OS=Trichosanthes kirilowii OX=3677 GN=p...	[more]
G3ETW8	2.0e-23	100.00	Photosystem II reaction center protein K OS=Cucumis melo subsp. melo OX=412675 G...	[more]
A0A1X9Q1R6	2.0e-23	100.00	Photosystem II reaction center protein K OS=Cucumis sativus OX=3659 GN=psbK PE=3...	[more]
A0A249RZF0	2.0e-23	100.00	Photosystem II reaction center protein K OS=Cucumis melo var. cantalupensis OX=3...	[more]

BLAST of IVF0012978 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841766.1	6.82e-32	100.00	photosystem II protein K [Cucumis melo subsp. melo] >YP_009004028.1 photosystem ...	[more]
YP_009505063.1	9.69e-32	98.36	photosystem II protein K [Cucurbita pepo] >YP_009525169.1 photosystem II protein...	[more]
YP_009325972.1	1.96e-31	98.36	photosystem II protein K [Citrullus lanatus] >YP_009348014.1 photosystem II prot...	[more]
YP_009317369.1	1.96e-31	98.36	photosystem II protein K [Coccinia grandis] >YP_009751973.1 photosystem II subun...	[more]
YP_010131077.1	1.96e-31	98.36	photosystem II protein K [Benincasa hispida] >QPZ75724.1 photosystem II protein ...	[more]

BLAST of IVF0012978 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00070.1	1.0e-19	81.97	photosystem II reaction center protein K precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003687	Photosystem II PsbK	PFAM	PF02533	PsbK	coord: 21..61 e-value: 3.1E-24 score: 84.9
IPR003687	Photosystem II PsbK	PANTHER	PTHR35325	FAMILY NOT NAMED	coord: 1..61
IPR003687	Photosystem II PsbK	HAMAP	MF_00441	PSII_PsbK	coord: 23..61 score: 18.741066
IPR037270	Photosystem II PsbK superfamily	SUPERFAMILY	161037	Photosystem II reaction center protein K, PsbK	coord: 25..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012978.1	IVF0012978.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0009523	photosystem II