IVF0023306 (gene) Melon (IVF77) v1

Overview


Name	IVF0023306
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr10: 9127984 .. 9128361 (+)
RNA-Seq Expression	IVF0023306
Synteny	IVF0023306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAATTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCTAATCTGATAGGACGCATGGACTTTCACTTTCCCATGCCTTATGTCCATGGCTGGTTAGCCCATTACTTTGGCACGCATTATCCACTTCCCACAGAAGTTCGAGGTCCCAAGATGACTAACATTTCAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGA

mRNA sequence

ATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAATTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCTAATCTGATAGGACGCATGGACTTTCACTTTCCCATGCCTTATGTCCATGGCTGGTTAGCCCATTACTTTGGCACGCATTATCCACTTCCCACAGAAGTTCGAGGTCCCAAGATGACTAACATTTCAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGA

Coding sequence (CDS)

ATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAATTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCTAATCTGATAGGACGCATGGACTTTCACTTTCCCATGCCTTATGTCCATGGCTGGTTAGCCCATTACTTTGGCACGCATTATCCACTTCCCACAGAAGTTCGAGGTCCCAAGATGACTAACATTTCAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGA

Protein sequence

MDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGLGLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEYEAEN

Homology

[Close]

BLAST of IVF0023306 vs. ExPASy TrEMBL
Match: A0A5A7TZZ9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2963G00230 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFRAASLMAA TIY+LA+PVLANIYHGL
Sbjct: 234 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVPVLANIYHGL 293

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 294 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 353

Query: 122 EA 124
           EA
Sbjct: 354 EA 355

[Close]

BLAST of IVF0023306 vs. ExPASy TrEMBL
Match: A0A5D3C543 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00620 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFRAASLMAA TIY+LA+PVLANIYHGL
Sbjct: 264 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVPVLANIYHGL 323

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 324 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 383

Query: 122 EA 124
           EA
Sbjct: 384 EA 385

[Close]

BLAST of IVF0023306 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.7e-59
Identity = 112/122 (91.80%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFRAASLM AGTIY+LA+PVLANIYHGL
Sbjct: 309 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMTAGTIYSLAVPVLANIYHGL 368

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN  GRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 369 GLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 428

Query: 122 EA 124
           EA
Sbjct: 429 EA 430

[Close]

BLAST of IVF0023306 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.5e-59
Identity = 112/122 (91.80%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLSYWL LFVF HKGSFLRP VFR ASLMA GTIY+LA+PVLANIYHGL
Sbjct: 163 DDLKDETYLAAFLSYWLFLFVFPHKGSFLRPEVFRVASLMATGTIYSLAVPVLANIYHGL 222

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 223 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 282

Query: 122 EA 124
           EA
Sbjct: 283 EA 284

[Close]

BLAST of IVF0023306 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.5e-59
Identity = 112/122 (91.80%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLF+F  KGSFLRPGVFRAASLMAA TIY+LA+PVLANIYHGL
Sbjct: 281 DDLKDETYLAAFLSCWLCLFIFPQKGSFLRPGVFRAASLMAACTIYSLAVPVLANIYHGL 340

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 341 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 400

Query: 122 EA 124
           EA
Sbjct: 401 EA 402

[Close]

BLAST of IVF0023306 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 6.69e-73
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFR ASLMAAGTIY+LA+PVLANIYHGL
Sbjct: 276 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVPVLANIYHGL 335

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLA+YFGTHYPLPTEVR PKMTN SGEGGSIYFG+Y
Sbjct: 336 GLITKASNPIGRMDFHFPMHYVHGWLAYYFGTHYPLPTEVRRPKMTNFSGEGGSIYFGKY 395

Query: 122 EA 123
           EA
Sbjct: 396 EA 397

[Close]

BLAST of IVF0023306 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (605), Expect = 4.11e-72
Identity = 112/122 (91.80%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLSYWL LFVF HKGSFLRP VFR ASLMA GTIY+LA+PVLANIYHGL
Sbjct: 163 DDLKDETYLAAFLSYWLFLFVFPHKGSFLRPEVFRVASLMATGTIYSLAVPVLANIYHGL 222

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 223 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 282

Query: 122 EA 123
           EA
Sbjct: 283 EA 284

[Close]

BLAST of IVF0023306 vs. NCBI nr
Match: KAA0047546.1 (hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 5.85e-72
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFRAASLMAA TIY+LA+PVLANIYHGL
Sbjct: 234 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVPVLANIYHGL 293

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 294 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 353

Query: 122 EA 123
           EA
Sbjct: 354 EA 355

[Close]

BLAST of IVF0023306 vs. NCBI nr
Match: TYK06278.1 (hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 9.38e-72
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFRAASLMAA TIY+LA+PVLANIYHGL
Sbjct: 264 DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVPVLANIYHGL 323

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEGGSIYFGEY
Sbjct: 324 GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGGSIYFGEY 383

Query: 122 EA 123
           EA
Sbjct: 384 EA 385

[Close]

BLAST of IVF0023306 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (599), Expect = 1.77e-71
Identity = 111/122 (90.98%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   DDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIPVLANIYHGL 61
           DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFR  SLMAAGTIY+LA+PVLANIYHGL
Sbjct: 10  DDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVPVLANIYHGL 69

Query: 62  GLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPKMTNISGEGGSIYFGEY 121
           GLITKASN IGRMDFHFPM YVHGWLAHYFGTHYPLPTEVRGPKMTN SGEG SIYFGEY
Sbjct: 70  GLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGEGESIYFGEY 129

Query: 122 EA 123
           EA
Sbjct: 130 EA 131

The following BLAST results are available for this feature:

BLAST of IVF0023306 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZZ9	1.6e-59	92.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C543	1.6e-59	92.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VHW8	2.7e-59	91.80	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U349	3.5e-59	91.80	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SHN8	3.5e-59	91.80	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0023306 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	6.69e-73	90.16	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0050333.1	4.11e-72	91.80	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0047546.1	5.85e-72	92.62	hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa]	[more]
TYK06278.1	9.38e-72	92.62	hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	1.77e-71	90.98	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023306 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 6..96 e-value: 4.2E-10 score: 39.3
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 7..123
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 7..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023306.2	IVF0023306.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane