IVF0005594 (gene) Melon (IVF77) v1

Overview


Name	IVF0005594
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LOL1
Location	chr04: 677939 .. 680290 (+)
RNA-Seq Expression	IVF0005594
Synteny	IVF0005594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGGATTAAGAGAAGGCCTTTCAAAGGAAAGAAAGAAAACAAAGAAAAAGCTTAGTTGTAAGAAAGGTTTCAACAAACAACTATTTGATACTTATCCTTTTGCTTTTACGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCTTTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCTCACTTCAACTCATTGGCTTTTCAATCTTTCTTCCCCCAGCTTCTTCCTTGCTGGGTTTCTCCATTTTTTTGGTTTGTTCCATTCCATTTCTGCTCAATATCAATACACTACATTACATTACTTTACGTTACTCTTTTTTCAGGGTTCTTCCACTTTTCACACACCCTCATCAAAATTCCTTCATTTCCATCCAAATTTCTTCCCAACACATGTTGCAATTCTCTATCTTTATTTGTTTTCTTCTTTTGATTCCTCTATTTTCTGTGAATTTTCCCAACAGGTTCATCTCCCTAAACTTGTTTCCATGGAGGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAGAGAAAAGTTAGGAAAGATTTTACTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGATTGCTAGAAAATGTATTAGTTTCCCATTTTCAAATTTTCTCATCAATGGAGCTGTAAATCCTATTGTTTGATGTTGCATATCTATAGCCTTGATTCTAAATTATGTTTTATGAGAGATTATTCAAGAAGATTGGGGTTTCTTTTTATGTGTTTGGTTTCATTAGATCAGTGATTTGTTATTTGGTACTCAACTGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGTATATTTTTTCTTCCTCTTCCTTTTCACCATCTAGCTCATGCCGATGCTAAATTTGAAATTTCTGTTAGAGAATTCTGTTGTTTTTGTTTATAAAGAAAGATTGGAAGCTTTAGTTACTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTAGGGAAATCTCAGTAACTTTCAGAAACTCAAATCAAAATTACGTTAGACATCTCGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAATAATTCATTCCTATCTAACTCCCATCATGAATAGCAACATTATGTTACAGATTGAGTTCACTAAAGGCATATCGTTAGAAAATAGTTAAGAGCTACAAAACTTTGTTTTGTAAGGAAAAACTCATGTGAACCGAGCGATAAATCCATATTGTTTCAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAAAAAAAAAAAAACTTCCTTTCTGTTGAACTCTCTTTTTCCGTACGAACATTGTTGAACTCTCTTTTTCTATACGAATATGAACTCGGAATAAAGTCATGCGATCTAAATCATCGGATTATTTGAGAATTAACCATCATCAGAAAGCTTAGAACATCAAACATGGCTCTGATAATACTCTAAACTCTTAAATCTATGCTTTTAAAGTTTTAACTCTTATCTTTCTATTGCCATTTCTTACTTGAATATGAAGAGAAGCCATACATTCTAGTATCTCACACTATCAATGTCTTTCATTGTAGATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGTAAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTTGACAAACGGAGGTTCCTCTTCTTATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACTTTAAATGTTGCTATTTTTTTCATCTTCACAGTGGTTGAATGTATGCTTTAAGTAGTTTTGAGAAAATATATATGAATATGGTAGAGAGACAAGTTTTTATACTGTCTTGAGTGTAATATAACTGTTGGTAAAGATGGATTTTGGTTTGTTTGTT

mRNA sequence

CTTGGGATTAAGAGAAGGCCTTTCAAAGGAAAGAAAGAAAACAAAGAAAAAGCTTAGTTGTAAGAAAGGTTCATCTCCCTAAACTTGTTTCCATGGAGGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAGAGAAAAGTTAGGAAAGATTTTACTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGTAAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTTGACAAACGGAGGTTCCTCTTCTTATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACTTTAAATGTTGCTATTTTTTTCATCTTCACAGTGGTTGAATGTATGCTTTAAGTAGTTTTGAGAAAATATATATGAATATGGTAGAGAGACAAGTTTTTATACTGTCTTGAGTGTAATATAACTGTTGGTAAAGATGGATTTTGGTTTGTTTGTT

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACAAGTGCAATCGATCAAAAAGCATAA

Protein sequence

MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSAIDQKA

Homology

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BLAST of IVF0005594 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of IVF0005594 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.1e-65
Identity = 124/141 (87.94%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVPAPGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S    DQK
Sbjct: 163 KCAVCNFVTSVGASPGT-DQK 181

[Close]

BLAST of IVF0005594 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-39
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPAPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P+PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMST 138
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM+T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116

[Close]

BLAST of IVF0005594 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-38
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV--PAPGTEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T V  PAP  EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 140
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM+T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119

[Close]

BLAST of IVF0005594 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.7e-34
Identity = 73/128 (57.03%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of IVF0005594 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.2e-72
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP P
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 145
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of IVF0005594 vs. ExPASy TrEMBL
Match: A0A6J1ET02 (protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.5e-72
Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPP PYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSA+DQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAVDQKA 144

[Close]

BLAST of IVF0005594 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 293 bits (750), Expect = 4.57e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 291 bits (745), Expect = 2.65e-99
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287 bits (734), Expect = 1.26e-97
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of IVF0005594 vs. NCBI nr
Match: XP_038887483.1 (protein LOL1 isoform X2 [Benincasa hispida])

HSP 1 Score: 285 bits (730), Expect = 5.13e-97
Identity = 139/144 (96.53%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VP PG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144
           SVKCAVCNFVTSVGMSTS IDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSTIDQKA 144

[Close]

BLAST of IVF0005594 vs. NCBI nr
Match: XP_022972004.1 (protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbita maxima])

HSP 1 Score: 282 bits (722), Expect = 8.82e-96
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP P
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 144
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of IVF0005594 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 250.4 bits (638), Expect = 8.9e-67
Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of IVF0005594 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 250.4 bits (638), Expect = 8.9e-67
Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of IVF0005594 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-61
Identity = 113/124 (91.13%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIR 79
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 139
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG STS 
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTST 180

Query: 140 IDQK 144
            D K
Sbjct: 181 TDSK 184

[Close]

BLAST of IVF0005594 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-35
Identity = 73/128 (57.03%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of IVF0005594 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-35
Identity = 73/128 (57.03%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of IVF0005594 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	1.3e-65	85.33	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	2.1e-65	87.94	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	1.6e-39	64.35	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	3.8e-38	63.56	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	5.7e-34	57.03	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of IVF0005594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQ35	2.4e-75	100.00	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A0A0LEE4	9.0e-75	99.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A6J1GKN9	1.7e-73	96.53	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A6J1I7B6	4.2e-72	95.86	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]
A0A6J1ET02	5.5e-72	95.14	protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1	[more]

BLAST of IVF0005594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465951.1	4.57e-100	100.00	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]
XP_004148490.1	2.65e-99	99.31	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_022952054.1	1.26e-97	96.53	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]
XP_038887483.1	5.13e-97	96.53	protein LOL1 isoform X2 [Benincasa hispida]	[more]
XP_022972004.1	8.82e-96	95.86	protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbit...	[more]

BLAST of IVF0005594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	8.9e-67	85.33	lsd one like 1	[more]
AT1G32540.3	8.9e-67	85.33	lsd one like 1	[more]
AT1G32540.1	2.5e-61	91.13	lsd one like 1	[more]
AT4G20380.2	4.1e-35	57.03	LSD1 zinc finger family protein	[more]
AT4G20380.1	4.1e-35	57.03	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 106..130 e-value: 8.3E-13 score: 47.9 coord: 68..92 e-value: 1.5E-12 score: 47.1 coord: 29..53 e-value: 8.6E-11 score: 41.5
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 65..94 e-value: 8.6E-15 score: 52.1 coord: 26..56 e-value: 9.7E-13 score: 45.5 coord: 103..133 e-value: 1.8E-11 score: 41.4
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..141
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..141
IPR036280	Multiheme cytochrome superfamily	SUPERFAMILY	48695	Multiheme cytochromes	coord: 29..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005594.3	IVF0005594.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus