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IVF0002617.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTTCCAAATCCAAACAACTAAGCTCACTATTCCGCTCCGCCATTAAAGCTGCAAAGTCTTCAAAGAATCCCCAAGATGCCGCTCTTCAAAACAACGTTTCCTCTATCGATCCTTTATCTCTCAGCACCTCTCTCTATAACGCCATCTATAAGCGTTCCGTCAACTCCCCGACCTTCAAGAAGCTTCCCCAGAACCCCAATTCTGACGTTCAATTTCCTGCTCTCATTCTAGAAGAGTCTTCGGATTCTGGTACGTGTATTGCATTTTAATACTTTAGTTATGTTACATCGTGTTTTTGTTATTTTGGTTAATGGGTCTGTAGTTAATCTTCATTCCAGCTTAATTTTGCCTTAGGCTTCGTGGTTTAGTGTTTTGTTGAAGCTGAAAAGAAGTTTTATTTTAATTATATTTCATTTGCAGTGAAGAGCAGGTGAATGACATTTGATTTATCTTGTTTTTACTTCTCCCAAAAGTTCATGTTTTAATGCAGGGGATTCTGTGAAGCATCTAACCGAGGCCATATCTTCCGTTCTGTGCGGTACGTATCATTGAATGTTTGTTGTAGGCATTTAGTCTCAATTTTTTTAAGATTTATTATAACTCGTAAATTGCAATTTTCTTCGTTAAGTTGTCAATAACCTAATAAGCATATAGTAAATATCGAAGGCCAACAGCTAAAATATCTAATGAGTTTCTTTGGCTACTAAACGTAGGGTCAGACAATTGTCCAGTCCTCGAAGGTTTGGTCCAGCTCACGTATTAAAAAAAAATGATGTTTTACCTTAGAAATTTTAGAGTGGAGTCCTCATATATTTGAGCATTAGTCTCTTTTCATTTGACCAGTTTTCTTTTAAAAAACTAGCCACTTTTTGGATCTTACGTTTCAGATTTTTAGGTTGTGTATTTCATCATTACTGTTTCAGATTTTTATGTTGTCTATTTCATCACAGCGAGAATGAGGGGATGTGAGTAATCAAATTAATTTCCTGTCGGGTTATATAAGCTGATTAAATACATTCTTATATAAGTACTACGTTTTATAAATTATTATAATTTTGATGATCAGACTGTAAAATAAAAATTTGGTTTCTTACAGGGCAGGTTTCACCATCCTAAACAAGTTTTAGAGTTGCATTTACTATTCATAATTATTTGATTTGTAATTTTCATAGACATTATTTCATACGTTATCGCCTTATTTTGCCTCCAATTATGAATCTATCTTAGTGCAGTTCTCAGTTCTTCCGTTTTCTCCAAGTGAACTGCTTTAGTAATGTATTGTTTCCTTTTGCAGAAGGCTCATCTGTTAGGTCTCCTGAAGCACAAGGAAATTGTGTTGAAAAATCTTTGGAAAAATTATTAGATATACCATGGTTTTCCATCAAAACAAATCATAGCTTAACATTACATCACAAAGAAATATCCTGGGAAAGAAAGCAAAAATGGGTATTAAAAATACCCAGAGCGATAGATTTAGACGATTAGTTAGAAGTTGTGCAGACAGGCTGGGGAGTGATGTTACTCTTGAAGTCTTTGGTAAATTGGGACGAGAAACTGGTGTGAAAGAATACGATGCACTAGTAGGTATATGTTTAGAGAAGGCTAAGGCAAGTAACGACGTGGAGGTTGTATTGGGACAGATAGGGAAGGTTTATCAGATATTTAAATCAATGAAAGAACAGGGTTTTTCTTTAGAAGATGGAACTTATGGCCCAGTGCTCGCGTGTTTAATTGACATGGACATGATGGAAGAATTTAATTTTTTCTGTGAGGCTATAAAAGATGGAAATCCAGGCTCAATATCAAGGTTGGGTTACTATAAAATGTTGTTCTATATTAAAATCAACGATGAAGAAAAAGTTCAGGAGCTTTGTTACCGTGCTACAGTTGATGATGGAGTGGACAAGTTCAGTTTACAAGGTACGCCCCAGTTGTTTAAGGATACACAAACCTCTGCTGCAACTTTTGTCTTCTTGCTTTGAAATAAACAATGGGGAAGTTCTGCTATCAGGAAACTTTAATTCTGTCTTAAGACAATTGTTAAATTGGCACCAAACCTAGAGGTTTAAGCTAATGGGTTTGGGTATAAGTTAATTATAATTTATATTAATACTTCAACCATAAGAAATAACCTGTTGATAAAAAGCATAAATAACAAGGGATCTTTTTTTGGCTGAGAAATTATTAGAAAGCTCTCCAATCAGCTATAGTAAAGAACAACAAGAAATAACTAAACGTCTTGGTTGCAGCCTAAAAGAAATGCATATAGTCAGGTGGCGAGTCTTTGATGTAACATGTAATATGTTTGAGACTTAAGGCCAATGATAGGTCTTGTTTGGTAACCATTTCATGTTTTTTGTTTTTGGCTTTTGAAAAGTAAGCCTATTTCCTTTCATTTTCTTATCGTGGAATTAATCTTACGTAGAAGAGTTGCATTCATAGTCAGACTTTAAAAACAATAATGAGATTTTTAAAAACTAATTTTTTTATTATTATTTTTAAAATTTTCAAACTTTGATTTGGTCTCTAAAAACATGGGTAAAAATTAGATATATCAAAGCAACAAATTTAGAGGTGGAAGAGGTATTTATAGGCTTAATTTGCAAAAATCTGAAACAAAAGTTGAAATGGTTACCAAAATGGGCCTTAGTCATTTATTGTTCTACCACAAGTTATTTTTCAAGTTGTTTTTGCAGCAAGTTATTCAAATTTGGTTTAGTTACTTCTTAGTTAGTTATTTTAAGTTATTCTTTTAAATCTCTCAAAGGCTGGTTTGTAGCCTTGAAATAGGGATCCCTAAGTTGTAAGAGGCATTAGTTCTAAGCGAGTTCTTCAAGAATTCTCTAGATTTTGTTCAAGAAATTAGTTGTACACCAGACTCTCTCCCACCTCTTTCTATACCCTGGAATATTTTAGCTTTCCTCTAGAGAATAGGGTCAGTAATGATATAGGACAATTCTTGGAAATTATTTTGAGGTTTGGAGTTCAATTTTGAAGTTGTGATAATTTTAAGGCTTTATGGACAATCAAACTTGAAATTGAATTCTTATTTAGTGTTTGCAATGAAAAATAACAAGCTAAGTGAAAGAAATTTATAATAGAAGGAACCTATAATAAACAACACCTTTGGCGTCCTCCTTGGGAAGCCAATAAAAATTCTTTGAAGTGATTAGCACAGTGTTTTCTCTGTTTAACCATTTCTGGAAAAAGGTTGTAGCTATTGTTTTAAAGATAATGCCGAGTTTATCATATTTATCAACTGGGTACATGCCAAGGGGAAGATGACCGAGTTTCCCACTTTCCCCACCTTTGTTACCTGTATAGATAAAATGATAATCTCTCTTGATACTTTCTTACACATATTATATAGTAACACACACACACACACACACTACTTTTATCCACTCATTCATCAGGTCAGTTAGTCTTACCAGTCACGATGGATATGATCTTCTACATGAGTTCTTATCCATCATGACTGGTAAGATTTCAGTACTTTCTTACACATTAATTAAGAACAAACACATCTACACACATTCACACACGACTTGTATCTAGTCCACTCATTCATCAGATCAGTTAGTCTTATTGGTCATGATGGATCTGACCTTCTACATGAGTTCAATAGGTTATGGATGTTCCATATGGCATAAGCAATTATAAAATTACAATTTACATTCCCAAACTTTTTTGATAAGCTATGGTTATGTTTTTGGTGAGGCATATATCTTACGTTGAAAAAGATACATTTCAGAGATAAACCTGTTTGGTTAAGAATTTGGAACCTTTGGTTACAGAAAATTATTTGTTGGCGCTCTGTGAAAGTGAGCAGACAAAGCAACTTTTACAGATGCTGGAGGTTATAGACATCACAAAACTTTCGACAACTGTAGTTGCACCTATCATCTTCAAATGCTTAGGGAGGCTATCACTTCACACTTTTGCAGAGAAGTTGCTTTTGGCATTTAAAACTTCTGGTATGTTGATGATTGCCTTAAACTTTTATTAA ATGCGTTCCAAATCCAAACAACTAAGCTCACTATTCCGCTCCGCCATTAAAGCTGCAAAGTCTTCAAAGAATCCCCAAGATGCCGCTCTTCAAAACAACGTTTCCTCTATCGATCCTTTATCTCTCAGCACCTCTCTCTATAACGCCATCTATAAGCGTTCCGTCAACTCCCCGACCTTCAAGAAGCTTCCCCAGAACCCCAATTCTGACGTTCAATTTCCTGCTCTCATTCTAGAAGAGTCTTCGGATTCTGGGGATTCTGTGAAGCATCTAACCGAGGCCATATCTTCCGTTCTGTGCGAAGGCTCATCTGTTAGGTCTCCTGAAGCACAAGGAAATTGTGTTGAAAAATCTTTGGAAAAATTATTAGATATACCATGGTTTTCCATCAAAACAAATCATAGCTTAACATTACATCACAAAGAAATATCCTGGGAAAGAAACGATAGATTTAGACGATTAGTTAGAAGTTGTGCAGACAGGCTGGGGAGTGATGTTACTCTTGAAGTCTTTGGTAAATTGGGACGAGAAACTGGTGTGAAAGAATACGATGCACTAGTAGGTATATGTTTAGAGAAGGCTAAGGCAAGTAACGACGTGGAGGTTGTATTGGGACAGATAGGGAAGGTTTATCAGATATTTAAATCAATGAAAGAACAGGGTTTTTCTTTAGAAGATGGAACTTATGGCCCAGTGCTCGCGTGTTTAATTGACATGGACATGATGGAAGAATTTAATTTTTTCTGTGAGGCTATAAAAGATGGAAATCCAGGCTCAATATCAAGGTTGGGTTACTATAAAATGTTGTTCTATATTAAAATCAACGATGAAGAAAAAGTTCAGGAGCTTTGTTACCGTGCTACAGTTGATGATGGAGTGGACAAGTTCAGTTTACAAGAAAATTATTTGTTGGCGCTCTGTGAAAGTGAGCAGACAAAGCAACTTTTACAGATGCTGGAGGTTATAGACATCACAAAACTTTCGACAACTGTAGTTGCACCTATCATCTTCAAATGCTTAGGGAGGCTATCACTTCACACTTTTGCAGAGAAGTTGCTTTTGGCATTTAAAACTTCTGGTATGTTGATGATTGCCTTAAACTTTTATTAA ATGCGTTCCAAATCCAAACAACTAAGCTCACTATTCCGCTCCGCCATTAAAGCTGCAAAGTCTTCAAAGAATCCCCAAGATGCCGCTCTTCAAAACAACGTTTCCTCTATCGATCCTTTATCTCTCAGCACCTCTCTCTATAACGCCATCTATAAGCGTTCCGTCAACTCCCCGACCTTCAAGAAGCTTCCCCAGAACCCCAATTCTGACGTTCAATTTCCTGCTCTCATTCTAGAAGAGTCTTCGGATTCTGGGGATTCTGTGAAGCATCTAACCGAGGCCATATCTTCCGTTCTGTGCGAAGGCTCATCTGTTAGGTCTCCTGAAGCACAAGGAAATTGTGTTGAAAAATCTTTGGAAAAATTATTAGATATACCATGGTTTTCCATCAAAACAAATCATAGCTTAACATTACATCACAAAGAAATATCCTGGGAAAGAAACGATAGATTTAGACGATTAGTTAGAAGTTGTGCAGACAGGCTGGGGAGTGATGTTACTCTTGAAGTCTTTGGTAAATTGGGACGAGAAACTGGTGTGAAAGAATACGATGCACTAGTAGGTATATGTTTAGAGAAGGCTAAGGCAAGTAACGACGTGGAGGTTGTATTGGGACAGATAGGGAAGGTTTATCAGATATTTAAATCAATGAAAGAACAGGGTTTTTCTTTAGAAGATGGAACTTATGGCCCAGTGCTCGCGTGTTTAATTGACATGGACATGATGGAAGAATTTAATTTTTTCTGTGAGGCTATAAAAGATGGAAATCCAGGCTCAATATCAAGGTTGGGTTACTATAAAATGTTGTTCTATATTAAAATCAACGATGAAGAAAAAGTTCAGGAGCTTTGTTACCGTGCTACAGTTGATGATGGAGTGGACAAGTTCAGTTTACAAGAAAATTATTTGTTGGCGCTCTGTGAAAGTGAGCAGACAAAGCAACTTTTACAGATGCTGGAGGTTATAGACATCACAAAACTTTCGACAACTGTAGTTGCACCTATCATCTTCAAATGCTTAGGGAGGCTATCACTTCACACTTTTGCAGAGAAGTTGCTTTTGGCATTTAAAACTTCTGGTATGTTGATGATTGCCTTAAACTTTTATTAA MRSKSKQLSSLFRSAIKAAKSSKNPQDAALQNNVSSIDPLSLSTSLYNAIYKRSVNSPTFKKLPQNPNSDVQFPALILEESSDSGDSVKHLTEAISSVLCEGSSVRSPEAQGNCVEKSLEKLLDIPWFSIKTNHSLTLHHKEISWERNDRFRRLVRSCADRLGSDVTLEVFGKLGRETGVKEYDALVGICLEKAKASNDVEVVLGQIGKVYQIFKSMKEQGFSLEDGTYGPVLACLIDMDMMEEFNFFCEAIKDGNPGSISRLGYYKMLFYIKINDEEKVQELCYRATVDDGVDKFSLQENYLLALCESEQTKQLLQMLEVIDITKLSTTVVAPIIFKCLGRLSLHTFAEKLLLAFKTSGMLMIALNFY Homology
BLAST of IVF0002617.1 vs. ExPASy Swiss-Prot
Match: Q6NQ81 (Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g04790 PE=2 SV=2) HSP 1 Score: 204.5 bits (519), Expect = 2.0e-51 Identity = 119/334 (35.63%), Postives = 198/334 (59.28%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy Swiss-Prot
Match: O49711 (Pentatricopeptide repeat-containing protein At4g21880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21880 PE=3 SV=2) HSP 1 Score: 172.2 bits (435), Expect = 1.1e-41 Identity = 84/208 (40.38%), Postives = 131/208 (62.98%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy TrEMBL
Match: A0A5D3BES4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00710 PE=4 SV=1) HSP 1 Score: 691.8 bits (1784), Expect = 1.5e-195 Identity = 359/370 (97.03%), Postives = 360/370 (97.30%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy TrEMBL
Match: A0A1S3C047 (pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494956 PE=4 SV=1) HSP 1 Score: 691.8 bits (1784), Expect = 1.5e-195 Identity = 359/370 (97.03%), Postives = 360/370 (97.30%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy TrEMBL
Match: A0A0A0L854 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415080 PE=4 SV=1) HSP 1 Score: 601.3 bits (1549), Expect = 2.8e-168 Identity = 326/379 (86.02%), Postives = 337/379 (88.92%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy TrEMBL
Match: A0A1S3BYG2 (pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494956 PE=4 SV=1) HSP 1 Score: 582.0 bits (1499), Expect = 1.7e-162 Identity = 299/311 (96.14%), Postives = 300/311 (96.46%), Query Frame = 0
BLAST of IVF0002617.1 vs. ExPASy TrEMBL
Match: A0A6J1ITU1 (pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480523 PE=4 SV=1) HSP 1 Score: 508.1 bits (1307), Expect = 3.2e-140 Identity = 269/370 (72.70%), Postives = 306/370 (82.70%), Query Frame = 0
BLAST of IVF0002617.1 vs. NCBI nr
Match: KAA0046451.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ97763.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 687 bits (1773), Expect = 2.17e-241 Identity = 359/370 (97.03%), Postives = 360/370 (97.30%), Query Frame = 0
BLAST of IVF0002617.1 vs. NCBI nr
Match: XP_008454564.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 687 bits (1773), Expect = 3.92e-241 Identity = 359/370 (97.03%), Postives = 360/370 (97.30%), Query Frame = 0
BLAST of IVF0002617.1 vs. NCBI nr
Match: KAE8637216.1 (hypothetical protein CSA_021119 [Cucumis sativus]) HSP 1 Score: 586 bits (1511), Expect = 1.34e-208 Identity = 319/371 (85.98%), Postives = 331/371 (89.22%), Query Frame = 0
BLAST of IVF0002617.1 vs. NCBI nr
Match: XP_011651464.1 (pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Cucumis sativus] >XP_031745359.1 pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Cucumis sativus] >KAE8650683.1 hypothetical protein Csa_010273 [Cucumis sativus]) HSP 1 Score: 586 bits (1510), Expect = 2.31e-201 Identity = 319/370 (86.22%), Postives = 330/370 (89.19%), Query Frame = 0
BLAST of IVF0002617.1 vs. NCBI nr
Match: XP_008454565.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 578 bits (1491), Expect = 2.75e-199 Identity = 299/311 (96.14%), Postives = 300/311 (96.46%), Query Frame = 0
BLAST of IVF0002617.1 vs. TAIR 10
Match: AT4G04790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 204.5 bits (519), Expect = 1.4e-52 Identity = 119/334 (35.63%), Postives = 198/334 (59.28%), Query Frame = 0
BLAST of IVF0002617.1 vs. TAIR 10
Match: AT4G21880.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 172.2 bits (435), Expect = 7.9e-43 Identity = 84/208 (40.38%), Postives = 131/208 (62.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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