IVF0018157 (gene) Melon (IVF77) v1

Overview
NameIVF0018157
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNase H domain-containing protein
Locationchr04: 1891163 .. 1891695 (-)
RNA-Seq ExpressionIVF0018157
SyntenyIVF0018157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTGAGAGCACGAGGAGTCAGAAGATTTGGATGTCGCCTTATGTTGGTTTTTGGAGGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTGGCACTAGTTGGGTTGTTCGTGATTCCGCTGGAGCCTTTATCCTGGCTAGTTGTGAGAGAGCGGAGGTTAAATGGCCCATGGAGGTTCTTGAAGCATTAGCCACGAATAGAGGTTTGATTGTATATTCTGATTACTTCGGTCATGAGGATGTTCTCATATGATTGCGCTAATCTTCTTAATTCCATCAAGAATAAGTTTTTGGTTTTGACGGAGTTGTCGAATTTTGTTGAAAATGTGGATGTGTTATTTGTAAAGGTATGTGTGGTTTCTTTTGTTTGGTGTGCGCGCTCTACTAATGGGGTTGCTCATCACCTTGTGTTGGCCGCATTGTTGTTTGGGGATTGGGGGAGTTTTTTTCTCTAAACATAATGATATGGTTAGGATCCCTTGTAATATTCCAAGAAGGAGACTCGTAGTGATGGTGTGA

mRNA sequence

ATGACAAGTGAGAGCACGAGGAGTCAGAAGATTTGGATGTCGCCTTATGTTGGTTTTTGGAGGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTGGCTAGTTGTGAGAGAGCGGAGGTTAAATGGCCCATGGAGGTTCTTGAAGCATTAGCCACGAATAGAGGTTTGATTGTATATTCTGATTACTTCGTTTTTTTCTCTAAACATAATGATATGGTTAGGATCCCTTGTAATATTCCAAGAAGGAGACTCGTAGTGATGGTGTGA

Coding sequence (CDS)

ATGACAAGTGAGAGCACGAGGAGTCAGAAGATTTGGATGTCGCCTTATGTTGGTTTTTGGAGGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTGGCTAGTTGTGAGAGAGCGGAGGTTAAATGGCCCATGGAGGTTCTTGAAGCATTAGCCACGAATAGAGGTTTGATTGTATATTCTGATTACTTCGTTTTTTTCTCTAAACATAATGATATGGTTAGGATCCCTTGTAATATTCCAAGAAGGAGACTCGTAGTGATGGTGTGA

Protein sequence

MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEITFILASCERAEVKWPMEVLEALATNRGLIVYSDYFVFFSKHNDMVRIPCNIPRRRLVVMV
Homology
[Close]
BLAST of IVF0018157 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 68/81 (83.95%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEIT------------FILASCERAEVKW 60
          MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEI+            FILASCERAEVKW
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKW 60

Query: 61 PMEVLEALATNRGLIVYSDYF 70
          PMEVLEALATNRGLIVYSDYF
Sbjct: 61 PMEVLEALATNRGLIVYSDYF 81

[Close]
BLAST of IVF0018157 vs. ExPASy TrEMBL
Match: A0A0A0LGW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.1e-26
Identity = 66/113 (58.41%), Postives = 71/113 (62.83%), Query Frame = 0 

Query: 1   MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEITFILASCERAEVKWPMEVLEALATNR 60
           MTSES RSQ+IWM+    FW+FNLDASWNDVEEITFILA C R EVKWP EVLEALA  R
Sbjct: 3   MTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALARIR 62

Query: 61  GLIVYSDYF----------------------------VFFSKHNDMVRIPCNI 86
           GL V+SDYF                             FFS+HNDMVRI CNI
Sbjct: 63  GLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

[Close]
BLAST of IVF0018157 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 2.82e-40
Identity = 68/81 (83.95%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEIT------------FILASCERAEVKW 60
          MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEI+            FILASCERAEVKW
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKW 60

Query: 61 PMEVLEALATNRGLIVYSDYF 69
          PMEVLEALATNRGLIVYSDYF
Sbjct: 61 PMEVLEALATNRGLIVYSDYF 81

[Close]
BLAST of IVF0018157 vs. NCBI nr
Match: KGN60244.1 (hypothetical protein Csa_002227 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 1.17e-35
Identity = 66/113 (58.41%), Postives = 71/113 (62.83%), Query Frame = 0 

Query: 1   MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEITFILASCERAEVKWPMEVLEALATNR 60
           MTSES RSQ+IWM+    FW+FNLDASWNDVEEITFILA C R EVKWP EVLEALA  R
Sbjct: 3   MTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALARIR 62

Query: 61  GLIVYSDYF----------------------------VFFSKHNDMVRIPCNI 85
           GL V+SDYF                             FFS+HNDMVRI CNI
Sbjct: 63  GLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

The following BLAST results are available for this feature:
BLAST of IVF0018157 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6P61.7e-2983.95RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LGW55.1e-2658.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1[more]
BLAST of IVF0018157 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038679.12.82e-4083.95hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
KGN60244.11.17e-3558.41hypothetical protein Csa_002227 [Cucumis sativus][more]
BLAST of IVF0018157 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018157.1IVF0018157.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity