IVF0004528.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTCGGAATGAACAGATAAAAGGGAAAAGGAAGAACAAGAAAGAGAAGAAAAAATCAGCGGCTGAAAAATCAAAGAGGTTTATAAGAACAACATCCACAACAATATCAAACACTGAATCTGAGATTTCGAAGAACACACAAAAAAATGAAGAAGTGTGAGCTTTGTGGGCATCAAGCCAGGATGTTCTGCGAGTCCGATCAAGCTAACCTGTGTTGGGACTGCGATGAGAAGGTCACTGTGCTAATTTCTCGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGTATGCCAGTCGCCGACTCCTTGGGCCGCCTCTGGTCGCAAACTTACACCCACGGTCTGTGTGTGAGGGATGTGTTGAAGTCCATGATGGTAAATGCGAGCAGGACCGTCGTAGAGACAACGAGGTGGAAGTTGATGATGGTGATGATTTTGTCGATGGTGAAGGTTCGATAGTTATGAGGGAGGTGATAGTCAGGAAGACGATGATGGGGAAGATGATGACGATGAGGAAGAAGATGATGAGGACGGAGAAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCACCACCACCGCCCCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGTATGCATTTTTTAGGTTTCTTTTTTCTTCTATTGCCTTTTCTTCTGTGTTATCTTTTTCCTTAGTCTGTGTTGAAGTAATTCGTTGGGGATTTCGAAATTTCTTCTTCATCCATTCGCTCTTCTGGAATCGGTGTTTTGATTAATACCACAGAAATCCACGGTTTTCACTTCTCCAAGTGAATCCGACTCAAGATTTGAACCGAATCATTATGTTTTATTTCCTTTTAACTATGATTTTGATACGAATTGTGACTAATATGCCGATCTGAAACACAATTTTCATTTTCTTAGTTGTCAATTTTCCAGTGATCCAAATAGGGTTTTCAATAATCGTTTATAACTTGAATGCAGGACGAAATCGAGTCGTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCAACTTCGTCAAGTTCCCTTAGGCCACTGAAGCAAGCAAGAGTTGCAGGACCGATCCAATCAACCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGGACTCCAGAATCGTCTTCCCACAGACATTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGATTCTTCACTAACCACACAAATGGAGGTAGCTAGGGTTCTTGATTATTTTTCTTTTTTTCCTTTTGGGGTTTAATTTTTCTCACTAATTGTCTGTCATGATCAATTAATTCAAGGATTATACCTATTATCTCAACCGTGTAAAACCTAGAATTTCCCCCCTCTATTTTCCATCAGATCATCTTGTCATCATTTGTGAAGCCTGTCATGTGTAGCCAGATATTAATTACATTCTATTAACAGATTTCTCTCTACACTTTTGTGAGTGTTTTCTTGATGCAATATCTCAGTAAATATTTGTTAGTTGGTTTAAAGTGAGAGGTTCTCGCATTTTCTAGTTATTGTGTTTATGTGGGTCTCCCATGACCAGAAGAGATGTATTCATATATAATATATAAGTTTAAACCCATATCCCCATATCTCTTTTGGGAGCATTTTTAGGTCCAGGAGGCCGCTTTTTGGGATTTTTGCATATTGAAGATGATGCCCAATACCGAACTGAAAGGTAATCGCAATCAATCATATATATCTTGATATTATTTAATGGCCCTGAATTTCATGTTGGTGCTGTTTGTGATTAGAATAGTAAGATCATGGCCGACCGTGCGTTTGATGGAATCTTCATTTCTATATTTAACTCCCAGCTACATGCATATATACATGTATACAACTGAGGAAGTATTTGTATAGATGGTCTGTGTTTATTCTTCCAATCTTGGCTAGGGTTTGATGAAGAAATGATGTTTTGAGTTGCCAATTGTT CTTTCGGAATGAACAGATAAAAGGGAAAAGGAAGAACAAGAAAGAGAAGAAAAAATCAGCGGCTGAAAAATCAAAGAGGTTTATAAGAACAACATCCACAACAATATCAAACACTGAATCTGAGATTTCGAAGAACACACAAAAAAATGAAGAAGTGTGAGCTTTGTGGGCATCAAGCCAGGATGTTCTGCGAGTCCGATCAAGCTAACCTGTGTTGGGACTGCGATGAGAAGGTCACTGTGCTAATTTCTCGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGTATGCCAGTCGCCGACTCCTTGGGCCGCCTCTGGTCGCAAACTTACACCCACGGTCTGTGTGTGAGGGATGTGTTGAAGTCCATGATGGTAAATGCGAGCAGGACCGTCGTAGAGACAACGAGGTGGAAGTTGATGATGGTGATGATTTTGTCGATGGTGAAGGTTCGATAGTTATGAGGGAGGTGATAGTCAGGAAGACGATGATGGGGAAGATGATGACGATGAGGAAGAAGATGATGAGGACGGAGAAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCACCACCACCGCCCCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGACGAAATCGAGTCGTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCAACTTCGTCAAGTTCCCTTAGGCCACTGAAGCAAGCAAGAGTTGCAGGACCGATCCAATCAACCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGGACTCCAGAATCGTCTTCCCACAGACATTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGATTCTTCACTAACCACACAAATGGAGGTAGCTAGGGTTCTTGATTATTTTTCTTTTTTTCCTTTTGGGGTTTAATTTTTCTCACTAATTGTCTGTCATGATCAATTAATTCAAGGATTATACCTATTATCTCAACCGTGTAAAACCTAGAATTTCCCCCCTCTATTTTCCATCAGATCATCTTGTCATCATTTGTGAAGCCTGTCATGTGTAGCCAGATATTAATTACATTCTATTAACAGATTTCTCTCTACACTTTTGTGAGTGTTTTCTTGATGCAATATCTCAGTAAATATTTGTTAGTTGGTTTAAAGTGAGAGGTTCTCGCATTTTCTAGTTATTGTGTTTATGTGGGTCTCCCATGACCAGAAGAGATGTATTCATATATAATATATAAGTTTAAACCCATATCCCCATATCTCTTTTGGGAGCATTTTTAGGTCCAGGAGGCCGCTTTTTGGGATTTTTGCATATTGAAGATGATGCCCAATACCGAACTGAAAGGTAATCGCAATCAATCATATATATCTTGATATTATTTAATGGCCCTGAATTTCATGTTGGTGCTGTTTGTGATTAGAATAGTAAGATCATGGCCGACCGTGCGTTTGATGGAATCTTCATTTCTATATTTAACTCCCAGCTACATGCATATATACATGTATACAACTGAGGAAGTATTTGTATAGATGGTCTGTGTTTATTCTTCCAATCTTGGCTAGGGTTTGATGAAGAAATGATGTTTTGAGTTGCCAATTGTT ATGTATGCCAGTCGCCGACTCCTTGGGCCGCCTCTGGTCGCAAACTTACACCCACGGTCTGTGTGTGAGGGATGTGTTGAAGTCCATGATGGTAAATGCGAGCAGGACCGTCGTAGAGACAACGAGGTGGAAGTTGATGATGGTGATGATTTTGTCGATGGTGAAGGTTCGATAGTTATGAGGGAGGTGATAGTCAGGAAGACGATGATGGGGAAGATGATGACGATGAGGAAGAAGATGATGAGGACGGAGAAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCACCACCACCGCCCCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGACGAAATCGAGTCGTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCAACTTCGTCAAGTTCCCTTAGGCCACTGAAGCAAGCAAGAGTTGCAGGACCGATCCAATCAACCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGGACTCCAGAATCGTCTTCCCACAGACATTAA MYASRRLLGPPLVANLHPRSVCEGCVEVHDGKCEQDRRRDNEVEVDDGDDFVDGEGSIVMREVIVRKTMMGKMMTMRKKMMRTEKNQVVPWSYASSSPPPPPTVTSSSEGEISAGAGVASKRMREYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVAGPIQSTTSTPDDEACKAELKSTAVVRSIQRTPESSSHRH Homology
BLAST of IVF0004528.1 vs. ExPASy TrEMBL
Match: A0A5D3B734 (Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00930 PE=4 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69 Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0
BLAST of IVF0004528.1 vs. ExPASy TrEMBL
Match: A0A1S3BZT7 (zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103494983 PE=4 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69 Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0
BLAST of IVF0004528.1 vs. ExPASy TrEMBL
Match: A0A0A0LCX6 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G850640 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.9e-65 Identity = 143/180 (79.44%), Postives = 152/180 (84.44%), Query Frame = 0
BLAST of IVF0004528.1 vs. ExPASy TrEMBL
Match: A0A6J1CD44 (protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52 Identity = 129/188 (68.62%), Postives = 140/188 (74.47%), Query Frame = 0
BLAST of IVF0004528.1 vs. ExPASy TrEMBL
Match: A0A6J1IMI6 (protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111476916 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 6.1e-48 Identity = 121/185 (65.41%), Postives = 137/185 (74.05%), Query Frame = 0
BLAST of IVF0004528.1 vs. NCBI nr
Match: XP_008454616.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo] >KAA0036743.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa] >TYJ95810.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa]) HSP 1 Score: 272 bits (695), Expect = 1.11e-88 Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0
BLAST of IVF0004528.1 vs. NCBI nr
Match: XP_004146838.1 (zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus] >KGN59860.1 hypothetical protein Csa_002023 [Cucumis sativus]) HSP 1 Score: 258 bits (659), Expect = 3.22e-83 Identity = 143/180 (79.44%), Postives = 152/180 (84.44%), Query Frame = 0
BLAST of IVF0004528.1 vs. NCBI nr
Match: XP_038899463.1 (nucleolin [Benincasa hispida]) HSP 1 Score: 223 bits (567), Expect = 3.85e-69 Identity = 133/190 (70.00%), Postives = 141/190 (74.21%), Query Frame = 0
BLAST of IVF0004528.1 vs. NCBI nr
Match: XP_022139730.1 (protein BFR2 [Momordica charantia]) HSP 1 Score: 215 bits (548), Expect = 2.71e-66 Identity = 129/188 (68.62%), Postives = 140/188 (74.47%), Query Frame = 0
BLAST of IVF0004528.1 vs. NCBI nr
Match: XP_023535120.1 (protein BFR2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 202 bits (514), Expect = 3.39e-61 Identity = 124/185 (67.03%), Postives = 137/185 (74.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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